ENSG00000108039

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000322238 ENSG00000108039 No_inf pgKDN_inf XPNPEP1 protein_coding protein_coding 17.57408 15.38126 18.78887 0.728681 0.7537103 0.2885341 0.5362241 1.6086724 0.0000000 1.6086724 0.0000000 -7.3386673 0.03387500 0.101625 0.000000 -0.101625 0.84096753 0.02662795 FALSE TRUE
ENST00000488118 ENSG00000108039 No_inf pgKDN_inf XPNPEP1 protein_coding retained_intron 17.57408 15.38126 18.78887 0.728681 0.7537103 0.2885341 0.8853919 1.3310385 0.6982996 0.3568293 0.2435208 -0.9209191 0.05385833 0.087850 0.038425 -0.049425 0.75295675 0.02662795 TRUE TRUE
ENST00000502935 ENSG00000108039 No_inf pgKDN_inf XPNPEP1 protein_coding protein_coding 17.57408 15.38126 18.78887 0.728681 0.7537103 0.2885341 6.7006283 2.8147020 9.3919220 1.6724558 2.5366784 1.7348571 0.37165833 0.192275 0.497275 0.305000 0.45054935 0.02662795 FALSE TRUE
MSTRG.3984.1 ENSG00000108039 No_inf pgKDN_inf XPNPEP1 protein_coding   17.57408 15.38126 18.78887 0.728681 0.7537103 0.2885341 4.9116202 6.0983349 1.6483244 0.2033225 1.6483244 -1.8810529 0.28486667 0.399975 0.079175 -0.320800 0.02662795 0.02662795 FALSE TRUE
MSTRG.3984.7 ENSG00000108039 No_inf pgKDN_inf XPNPEP1 protein_coding   17.57408 15.38126 18.78887 0.728681 0.7537103 0.2885341 0.8807947 0.7633029 1.2774568 0.7633029 0.8665033 0.7354185 0.05066667 0.045875 0.072500 0.026625 0.83691150 0.02662795 FALSE TRUE
MSTRG.3984.8 ENSG00000108039 No_inf pgKDN_inf XPNPEP1 protein_coding   17.57408 15.38126 18.78887 0.728681 0.7537103 0.2885341 2.0890568 1.3802538 4.0699068 1.3802538 2.3502228 1.5531880 0.11604167 0.082950 0.222425 0.139475 0.81796357 0.02662795 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000108039 E001 0.2452102 0.0161552324 9.083112e-01   10 109864766 109864777 12 - 0.089 0.102 0.216
ENSG00000108039 E002 0.4890681 0.0161331079 8.829181e-01   10 109864778 109864778 1 - 0.163 0.184 0.216
ENSG00000108039 E003 23.2239117 0.0006258595 7.705978e-01 9.115077e-01 10 109864779 109865053 275 - 1.375 1.393 0.064
ENSG00000108039 E004 39.7223072 0.0003890146 8.683477e-01 9.548371e-01 10 109865054 109865312 259 - 1.605 1.614 0.029
ENSG00000108039 E005 14.0282403 0.0010996271 5.366200e-01 7.858711e-01 10 109868614 109868635 22 - 1.198 1.152 -0.163
ENSG00000108039 E006 11.4660676 0.0013641688 5.956863e-01 8.222680e-01 10 109868636 109868712 77 - 1.115 1.072 -0.154
ENSG00000108039 E007 2.7029113 0.0222220591 4.611464e-01 7.320737e-01 10 109869953 109870029 77 - 0.515 0.620 0.479
ENSG00000108039 E008 19.8309918 0.0007841442 4.305350e-01 7.083949e-01 10 109870731 109870904 174 - 1.293 1.344 0.180
ENSG00000108039 E009 0.2533610 0.0164088593 1.959392e-01   10 109870905 109871032 128 - 0.000 0.184 13.031
ENSG00000108039 E010 0.0000000       10 109871789 109871791 3 -      
ENSG00000108039 E011 5.0980047 0.0027407290 2.840104e-01 5.777256e-01 10 109871792 109871795 4 - 0.839 0.718 -0.485
ENSG00000108039 E012 10.7807091 0.0012763123 4.899850e-01 7.527542e-01 10 109871796 109871861 66 - 1.041 1.101 0.216
ENSG00000108039 E013 11.7832943 0.0014208780 2.587051e-01 5.511536e-01 10 109873367 109873427 61 - 1.059 1.152 0.336
ENSG00000108039 E014 0.9976754 0.0168514534 1.038959e-01 3.368670e-01 10 109873428 109873577 150 - 0.163 0.412 1.801
ENSG00000108039 E015 0.0000000       10 109875524 109875527 4 -      
ENSG00000108039 E016 10.0040335 0.0246257389 8.441810e-01 9.443327e-01 10 109875528 109875599 72 - 1.050 1.032 -0.066
ENSG00000108039 E017 12.6849622 0.0011280376 2.206012e-07 1.183871e-05 10 109875600 109877553 1954 - 0.880 1.307 1.548
ENSG00000108039 E018 0.9989616 0.0538598289 1.183335e-01 3.633889e-01 10 109877554 109877676 123 - 0.163 0.412 1.801
ENSG00000108039 E019 0.8625405 0.0135916902 5.723165e-01 8.083538e-01 10 109877677 109877722 46 - 0.226 0.313 0.631
ENSG00000108039 E020 1.4685449 0.0464366943 8.123131e-01 9.309356e-01 10 109877723 109877789 67 - 0.373 0.412 0.216
ENSG00000108039 E021 11.4754442 0.0013440731 9.069446e-01 9.703823e-01 10 109877790 109877867 78 - 1.100 1.091 -0.030
ENSG00000108039 E022 10.3245822 0.0036341372 1.732336e-01 4.463162e-01 10 109878000 109878058 59 - 1.108 0.987 -0.440
ENSG00000108039 E023 0.0000000       10 109878059 109878369 311 -      
ENSG00000108039 E024 7.4474441 0.0030731736 9.506946e-01 9.874583e-01 10 109880188 109880238 51 - 0.929 0.924 -0.021
ENSG00000108039 E025 6.3369834 0.0024500018 5.626221e-01 8.023772e-01 10 109880842 109880872 31 - 0.893 0.833 -0.232
ENSG00000108039 E026 4.6700816 0.0183869204 4.623353e-01 7.327532e-01 10 109880873 109880877 5 - 0.707 0.798 0.368
ENSG00000108039 E027 6.6303383 0.0041081598 4.262010e-01 7.049470e-01 10 109880878 109880931 54 - 0.839 0.924 0.323
ENSG00000108039 E028 3.9668383 0.0036620714 2.966329e-02 1.619127e-01 10 109882432 109882434 3 - 0.544 0.816 1.149
ENSG00000108039 E029 9.1101842 0.0017184118 7.377719e-02 2.765952e-01 10 109882435 109882523 89 - 0.917 1.082 0.608
ENSG00000108039 E030 5.4533456 0.0046442291 1.494018e-01 4.116601e-01 10 109882524 109882547 24 - 0.880 0.718 -0.642
ENSG00000108039 E031 7.8820587 0.0017653032 1.259198e-01 3.762354e-01 10 109882548 109882592 45 - 1.013 0.865 -0.557
ENSG00000108039 E032 5.0884042 0.0027545678 1.663372e-01 4.365491e-01 10 109882593 109882600 8 - 0.853 0.695 -0.632
ENSG00000108039 E033 7.5467626 0.0018503542 4.874242e-01 7.509013e-01 10 109882601 109882642 42 - 0.963 0.895 -0.254
ENSG00000108039 E034 0.0000000       10 109883788 109884065 278 -      
ENSG00000108039 E035 0.0000000       10 109884066 109884066 1 -      
ENSG00000108039 E036 7.9149311 0.0113587673 1.596876e-02 1.096308e-01 10 109884067 109884105 39 - 0.810 1.063 0.953
ENSG00000108039 E037 8.2324554 0.0112072008 2.612488e-01 5.539468e-01 10 109884106 109884124 19 - 0.905 1.021 0.432
ENSG00000108039 E038 8.3364260 0.0394648956 6.572506e-01 8.566141e-01 10 109884125 109884148 24 - 0.941 0.999 0.216
ENSG00000108039 E039 0.0000000       10 109884149 109884272 124 -      
ENSG00000108039 E040 0.0000000       10 109884493 109884539 47 -      
ENSG00000108039 E041 8.1511610 0.0017841711 3.208566e-01 6.138543e-01 10 109886246 109886265 20 - 1.004 0.910 -0.351
ENSG00000108039 E042 6.4183644 0.0022724448 6.906068e-02 2.655392e-01 10 109886266 109886269 4 - 0.952 0.760 -0.743
ENSG00000108039 E043 8.8540950 0.0017672392 1.071166e-01 3.430060e-01 10 109886270 109886341 72 - 1.059 0.910 -0.553
ENSG00000108039 E044 5.7113058 0.0031560295 4.179169e-01 6.976906e-01 10 109888049 109888097 49 - 0.867 0.779 -0.344
ENSG00000108039 E045 7.4130412 0.0019582625 2.729752e-01 5.667444e-01 10 109888098 109888192 95 - 0.973 0.865 -0.409
ENSG00000108039 E046 0.1272623 0.0123010387 4.642175e-01   10 109888496 109888502 7 - 0.000 0.102 12.116
ENSG00000108039 E047 7.8435496 0.0023169550 1.100445e-02 8.559341e-02 10 109888503 109888595 93 - 1.050 0.798 -0.954
ENSG00000108039 E048 0.0000000       10 109891266 109891354 89 -      
ENSG00000108039 E049 0.0000000       10 109891579 109891719 141 -      
ENSG00000108039 E050 0.1170040 0.0116772259 6.223177e-01   10 109891720 109891721 2 - 0.089 0.000 -12.676
ENSG00000108039 E051 8.0156061 0.0755660087 6.014646e-01 8.257240e-01 10 109891722 109891826 105 - 0.993 0.910 -0.313
ENSG00000108039 E052 0.0000000       10 109892489 109892584 96 -      
ENSG00000108039 E053 5.6311313 0.0025801857 6.207174e-01 8.360873e-01 10 109893012 109893075 64 - 0.794 0.849 0.216
ENSG00000108039 E054 0.1268540 0.0123161193 4.641586e-01   10 109893076 109893369 294 - 0.000 0.102 12.116
ENSG00000108039 E055 0.1268540 0.0123161193 4.641586e-01   10 109893370 109893493 124 - 0.000 0.102 12.116
ENSG00000108039 E056 0.1271363 0.0122221767 4.644687e-01   10 109894016 109894110 95 - 0.000 0.102 12.116
ENSG00000108039 E057 7.3817880 0.0273523509 1.163051e-01 3.595413e-01 10 109907691 109907815 125 - 1.004 0.816 -0.714
ENSG00000108039 E058 0.0000000       10 109907816 109907819 4 -      
ENSG00000108039 E059 2.5329066 0.1242625517 2.087922e-01 4.928502e-01 10 109915011 109915022 12 - 0.644 0.412 -1.107
ENSG00000108039 E060 4.8550300 0.0111168319 2.849100e-01 5.786327e-01 10 109915023 109915099 77 - 0.825 0.695 -0.521
ENSG00000108039 E061 0.0000000       10 109915100 109915179 80 -      
ENSG00000108039 E062 2.7948248 0.0050818949 4.906156e-01 7.531759e-01 10 109923402 109923553 152 - 0.621 0.528 -0.422

Help

Please Click HERE to learn more details about the results from DEXseq.