ENSG00000108509

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000572192 ENSG00000108509 No_inf pgKDN_inf CAMTA2 protein_coding retained_intron 16.92438 20.15033 11.93444 2.234543 0.6985749 -0.7551803 5.534509 5.9716145 3.233564 0.6170925 1.0919385 -0.8829551 0.3185333 0.299675 0.259550 -0.040125 0.8800861633 8.93224e-05   FALSE
ENST00000575365 ENSG00000108509 No_inf pgKDN_inf CAMTA2 protein_coding protein_coding_CDS_not_defined 16.92438 20.15033 11.93444 2.234543 0.6985749 -0.7551803 1.295120 0.9931504 1.501146 0.5847448 0.5163522 0.5911055 0.0853250 0.057900 0.126525 0.068625 0.7711792392 8.93224e-05   FALSE
ENST00000575580 ENSG00000108509 No_inf pgKDN_inf CAMTA2 protein_coding retained_intron 16.92438 20.15033 11.93444 2.234543 0.6985749 -0.7551803 2.370914 5.2006292 0.000000 2.0962300 0.0000000 -9.0253138 0.1135833 0.236800 0.000000 -0.236800 0.0000893224 8.93224e-05   FALSE
MSTRG.11938.1 ENSG00000108509 No_inf pgKDN_inf CAMTA2 protein_coding   16.92438 20.15033 11.93444 2.234543 0.6985749 -0.7551803 1.889879 2.2502511 1.297110 0.8835163 0.7801392 -0.7901030 0.1066000 0.102025 0.106175 0.004150 0.9110116656 8.93224e-05 FALSE TRUE
MSTRG.11938.9 ENSG00000108509 No_inf pgKDN_inf CAMTA2 protein_coding   16.92438 20.15033 11.93444 2.234543 0.6985749 -0.7551803 3.487881 1.8637558 5.290148 0.8620868 1.0142658 1.5000997 0.2460000 0.098725 0.457075 0.358350 0.1211245460 8.93224e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000108509 E001 0.0000000       17 4967972 4967991 20 -      
ENSG00000108509 E002 0.0000000       17 4967992 4967996 5 -      
ENSG00000108509 E003 0.0000000       17 4967997 4968001 5 -      
ENSG00000108509 E004 0.0000000       17 4968002 4968003 2 -      
ENSG00000108509 E005 0.0000000       17 4968004 4968035 32 -      
ENSG00000108509 E006 0.0000000       17 4968036 4968138 103 -      
ENSG00000108509 E007 17.6086706 0.0080658564 0.225930856 0.51382478 17 4968139 4968396 258 - 1.215 1.311 0.337
ENSG00000108509 E008 9.4861899 0.0014983096 0.242375536 0.53208879 17 4968397 4968819 423 - 0.958 1.067 0.402
ENSG00000108509 E009 2.4513018 0.0070018404 0.870928202 0.95561692 17 4968907 4968979 73 - 0.547 0.528 -0.090
ENSG00000108509 E010 2.4513018 0.0070018404 0.870928202 0.95561692 17 4968980 4968981 2 - 0.547 0.528 -0.090
ENSG00000108509 E011 0.0000000       17 4968982 4969081 100 -      
ENSG00000108509 E012 11.4186931 0.0012686886 0.001025187 0.01528502 17 4969150 4969337 188 - 0.920 1.203 1.029
ENSG00000108509 E013 0.6175864 0.0148442416 0.717814946 0.88650726 17 4969338 4969427 90 - 0.178 0.233 0.495
ENSG00000108509 E014 0.7447227 0.0142140114 0.467719910 0.73604081 17 4969428 4969499 72 - 0.178 0.290 0.910
ENSG00000108509 E015 0.2447669 0.0162946317 0.953150470   17 4969500 4969520 21 - 0.098 0.092 -0.090
ENSG00000108509 E016 0.3631227 0.0168003717 0.538387321   17 4969521 4969629 109 - 0.178 0.092 -1.090
ENSG00000108509 E017 6.7547845 0.0941178109 0.703010201 0.87919127 17 4969630 4969701 72 - 0.864 0.909 0.173
ENSG00000108509 E018 9.6762485 0.0112733610 0.681930577 0.86831560 17 4969902 4970085 184 - 1.045 1.011 -0.127
ENSG00000108509 E019 11.1122714 0.0018469989 0.074310023 0.27791670 17 4970340 4970536 197 - 0.993 1.148 0.562
ENSG00000108509 E020 17.4709999 0.0038218901 0.295347900 0.58860044 17 4972232 4972536 305 - 1.222 1.301 0.277
ENSG00000108509 E021 4.2887665 0.0733999201 0.924724951 0.97715075 17 4972769 4972950 182 - 0.724 0.722 -0.008
ENSG00000108509 E022 1.2156871 0.0121663152 0.456398025 0.72872226 17 4972951 4972991 41 - 0.401 0.290 -0.675
ENSG00000108509 E023 3.9207298 0.0038583160 0.830917129 0.93886168 17 4973175 4973253 79 - 0.703 0.681 -0.090
ENSG00000108509 E024 7.0716626 0.0064326616 0.190668274 0.46990965 17 4973585 4973769 185 - 0.970 0.841 -0.491
ENSG00000108509 E025 0.3809703 0.0313646336 0.120462089   17 4974048 4974384 337 - 0.000 0.233 12.650
ENSG00000108509 E026 0.0000000       17 4974385 4974420 36 -      
ENSG00000108509 E027 0.0000000       17 4974421 4974500 80 -      
ENSG00000108509 E028 2.1040757 0.1978419992 0.543939399 0.79061953 17 4977058 4977142 85 - 0.400 0.558 0.787
ENSG00000108509 E029 2.4707906 0.0769738207 0.560118329 0.80074253 17 4977143 4977192 50 - 0.480 0.585 0.495
ENSG00000108509 E030 0.0000000       17 4977193 4977200 8 -      
ENSG00000108509 E031 4.4951716 0.0033105104 0.087497808 0.30656779 17 4978504 4978630 127 - 0.833 0.636 -0.807
ENSG00000108509 E032 0.0000000       17 4979385 4979591 207 -      
ENSG00000108509 E033 19.1028434 0.0007620371 0.626013255 0.83921751 17 4979684 4980435 752 - 1.316 1.290 -0.090
ENSG00000108509 E034 6.4779063 0.0021157730 0.491692529 0.75395744 17 4980436 4980617 182 - 0.907 0.841 -0.254
ENSG00000108509 E035 2.7951976 0.0089706348 0.229692971 0.51826530 17 4980618 4980621 4 - 0.657 0.496 -0.728
ENSG00000108509 E036 9.5292661 0.0030266344 0.310961501 0.60413521 17 4981225 4981359 135 - 1.065 0.980 -0.313
ENSG00000108509 E037 3.6680394 0.0160277425 0.586993598 0.81688005 17 4981678 4981718 41 - 0.703 0.636 -0.283
ENSG00000108509 E038 3.0854189 0.0048823291 0.416652362 0.69649543 17 4981719 4981742 24 - 0.547 0.659 0.495
ENSG00000108509 E039 3.7858905 0.0046230415 0.460014331 0.73151732 17 4981743 4981831 89 - 0.724 0.636 -0.370
ENSG00000108509 E040 3.3693316 0.0049766002 0.003993008 0.04238069 17 4982089 4982160 72 - 0.800 0.425 -1.675
ENSG00000108509 E041 0.1268540 0.0123481794 0.579815338   17 4982161 4982175 15 - 0.000 0.092 11.117
ENSG00000108509 E042 0.2539903 0.0164655851 0.269049161   17 4982176 4982227 52 - 0.000 0.169 12.092
ENSG00000108509 E043 3.5114151 0.0042067659 0.060708413 0.24739296 17 4982757 4982801 45 - 0.763 0.528 -1.016
ENSG00000108509 E044 5.1172959 0.0030364543 0.243885556 0.53390119 17 4982802 4982892 91 - 0.849 0.722 -0.505
ENSG00000108509 E045 4.2996302 0.0095444396 0.775829871 0.91389526 17 4982976 4983043 68 - 0.703 0.741 0.158
ENSG00000108509 E046 1.2502502 0.0128740300 0.067880692 0.26290194 17 4983044 4983236 193 - 0.178 0.462 1.910
ENSG00000108509 E047 0.1272623 0.0123081428 0.580081976   17 4983698 4983760 63 - 0.000 0.092 11.117
ENSG00000108509 E048 3.2634924 0.0053815402 0.053803329 0.23076044 17 4985880 4985983 104 - 0.744 0.496 -1.090
ENSG00000108509 E049 4.3785254 0.0039745322 0.221337520 0.50848140 17 4986192 4986286 95 - 0.800 0.659 -0.576
ENSG00000108509 E050 0.0000000       17 4986954 4987370 417 -      
ENSG00000108509 E051 2.1947453 0.0599024529 0.586981442 0.81688005 17 4987593 4987675 83 - 0.547 0.462 -0.412

Help

Please Click HERE to learn more details about the results from DEXseq.