ENSG00000110697

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356404 ENSG00000110697 No_inf pgKDN_inf PITPNM1 protein_coding protein_coding 21.29185 27.2379 18.59108 4.306695 3.03414 -0.5507587 6.500704 6.520373 8.8559796 0.5082291 0.6535076 0.4411147 0.34748333 0.258075 0.512550 0.254475 0.24945226 0.02796743 FALSE TRUE
ENST00000436757 ENSG00000110697 No_inf pgKDN_inf PITPNM1 protein_coding protein_coding 21.29185 27.2379 18.59108 4.306695 3.03414 -0.5507587 2.092657 2.127714 0.5502203 0.6256565 0.5502203 -1.9320026 0.10365833 0.092250 0.035800 -0.056450 0.40298979 0.02796743 FALSE TRUE
ENST00000525568 ENSG00000110697 No_inf pgKDN_inf PITPNM1 protein_coding retained_intron 21.29185 27.2379 18.59108 4.306695 3.03414 -0.5507587 2.185062 5.947891 0.0000000 2.7413546 0.0000000 -9.2186578 0.07774167 0.202000 0.000000 -0.202000 0.02796743 0.02796743 FALSE FALSE
ENST00000527103 ENSG00000110697 No_inf pgKDN_inf PITPNM1 protein_coding protein_coding_CDS_not_defined 21.29185 27.2379 18.59108 4.306695 3.03414 -0.5507587 3.044148 3.237201 3.4667451 3.2372006 3.4667451 0.0985408 0.11031667 0.084350 0.125350 0.041000 0.99665998 0.02796743 FALSE FALSE
ENST00000527370 ENSG00000110697 No_inf pgKDN_inf PITPNM1 protein_coding retained_intron 21.29185 27.2379 18.59108 4.306695 3.03414 -0.5507587 2.001406 3.537766 1.0306607 0.2410002 0.1171041 -1.7694112 0.09291667 0.137675 0.057325 -0.080350 0.38281882 0.02796743 FALSE TRUE
MSTRG.5042.5 ENSG00000110697 No_inf pgKDN_inf PITPNM1 protein_coding   21.29185 27.2379 18.59108 4.306695 3.03414 -0.5507587 3.112278 3.782995 2.2905385 1.4448202 1.3599163 -0.7213658 0.15225000 0.144050 0.145400 0.001350 0.86091894 0.02796743 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000110697 E001 0.0000000       11 67491768 67491768 1 -      
ENSG00000110697 E002 0.1265070 0.0123664809 7.027795e-01   11 67491769 67491782 14 - 0.000 0.084 9.557
ENSG00000110697 E003 43.8960434 0.0003405296 6.309785e-01 8.417005e-01 11 67491783 67492296 514 - 1.657 1.638 -0.066
ENSG00000110697 E004 23.4522777 0.0005699671 3.557275e-01 6.455136e-01 11 67492934 67493058 125 - 1.413 1.359 -0.186
ENSG00000110697 E005 8.0037932 0.0031222955 9.686736e-01 9.936412e-01 11 67493059 67493062 4 - 0.946 0.951 0.019
ENSG00000110697 E006 8.6004405 0.0293944665 7.660292e-01 9.090918e-01 11 67493410 67493443 34 - 0.998 0.961 -0.135
ENSG00000110697 E007 14.4235032 0.0727858180 7.511322e-01 9.018402e-01 11 67493444 67493552 109 - 1.159 1.199 0.142
ENSG00000110697 E008 9.0229166 0.0315748324 3.577329e-01 6.472313e-01 11 67493553 67493593 41 - 0.932 1.036 0.387
ENSG00000110697 E009 17.1510461 0.0235033660 4.302734e-01 7.082236e-01 11 67493688 67493837 150 - 1.207 1.284 0.272
ENSG00000110697 E010 1.2425372 0.0101581586 3.913377e-01 6.765091e-01 11 67493838 67493921 84 - 0.264 0.398 0.840
ENSG00000110697 E011 21.0452938 0.0039259077 8.823481e-01 9.604482e-01 11 67493922 67494070 149 - 1.330 1.343 0.042
ENSG00000110697 E012 12.8909223 0.0018277467 4.940381e-01 7.557344e-01 11 67494244 67494295 52 - 1.167 1.114 -0.190
ENSG00000110697 E013 15.6840548 0.0026802112 3.748862e-01 6.625496e-01 11 67494296 67494360 65 - 1.175 1.243 0.240
ENSG00000110697 E014 19.8704708 0.0007172058 1.600940e-03 2.150563e-02 11 67494846 67494956 111 - 1.175 1.391 0.755
ENSG00000110697 E015 10.5649069 0.0015054077 1.627235e-02 1.108239e-01 11 67495077 67495139 63 - 0.917 1.135 0.799
ENSG00000110697 E016 12.5593091 0.0012577129 9.699464e-01 9.938644e-01 11 67495140 67495225 86 - 1.124 1.128 0.016
ENSG00000110697 E017 0.6351783 0.0267219099 4.345737e-02 2.033516e-01 11 67495226 67495279 54 - 0.000 0.316 14.257
ENSG00000110697 E018 20.4104370 0.0006636207 7.412258e-01 8.973574e-01 11 67495438 67495602 165 - 1.336 1.316 -0.069
ENSG00000110697 E019 21.8384841 0.0007488156 3.057259e-01 5.989691e-01 11 67496178 67496345 168 - 1.313 1.379 0.229
ENSG00000110697 E020 6.0533285 0.0026159061 3.538407e-01 6.435571e-01 11 67496346 67496348 3 - 0.780 0.883 0.402
ENSG00000110697 E021 8.9240411 0.0017154641 1.200439e-07 6.891623e-06 11 67496349 67497230 882 - 0.579 1.148 2.226
ENSG00000110697 E022 26.8152980 0.0007183759 9.485960e-02 3.204007e-01 11 67497231 67497436 206 - 1.379 1.476 0.336
ENSG00000110697 E023 19.5646114 0.0009809142 9.839347e-01 9.986907e-01 11 67497522 67497679 158 - 1.307 1.307 0.001
ENSG00000110697 E024 12.3530018 0.0011797778 6.477785e-02 2.565620e-01 11 67497917 67498024 108 - 1.199 1.053 -0.526
ENSG00000110697 E025 15.5929773 0.0303714987 5.094926e-01 7.673334e-01 11 67498133 67498322 190 - 1.250 1.187 -0.223
ENSG00000110697 E026 2.7234502 0.0979769578 5.214855e-01 7.753643e-01 11 67498323 67498595 273 - 0.510 0.602 0.424
ENSG00000110697 E027 19.6657639 0.0007989028 6.653306e-01 8.608045e-01 11 67498596 67498846 251 - 1.325 1.298 -0.093
ENSG00000110697 E028 6.6869027 0.0021825206 2.268983e-01 5.151266e-01 11 67498940 67499001 62 - 0.800 0.930 0.499
ENSG00000110697 E029 0.0000000       11 67499639 67499722 84 -      
ENSG00000110697 E030 4.4178318 0.0298374697 6.583731e-01 8.571678e-01 11 67499723 67499770 48 - 0.760 0.705 -0.222
ENSG00000110697 E031 5.4067525 0.0026941739 7.756819e-01 9.138154e-01 11 67499771 67499830 60 - 0.819 0.788 -0.120
ENSG00000110697 E032 0.0000000       11 67499831 67499913 83 -      
ENSG00000110697 E033 7.8303279 0.0020677527 1.880573e-01 4.662874e-01 11 67499914 67500009 96 - 1.010 0.883 -0.473
ENSG00000110697 E034 0.0000000       11 67500010 67500013 4 -      
ENSG00000110697 E035 18.2920209 0.0045955548 2.022969e-03 2.577530e-02 11 67500095 67500421 327 - 1.394 1.174 -0.770
ENSG00000110697 E036 9.3064070 0.0153216667 2.897223e-01 5.833600e-01 11 67501862 67501967 106 - 1.065 0.961 -0.383
ENSG00000110697 E037 3.4442944 0.0091198639 9.619319e-01 9.916848e-01 11 67501968 67502012 45 - 0.639 0.646 0.032
ENSG00000110697 E038 3.0526871 0.0341339027 4.291077e-01 7.075383e-01 11 67502013 67502038 26 - 0.666 0.553 -0.498
ENSG00000110697 E039 2.4270385 0.0069948257 1.401813e-01 3.983845e-01 11 67502039 67502046 8 - 0.639 0.434 -0.968
ENSG00000110697 E040 3.0438046 0.0059828974 2.105978e-01 4.951342e-01 11 67502047 67502086 40 - 0.691 0.526 -0.731
ENSG00000110697 E041 0.2543986 0.0160086343 3.490787e-01   11 67502087 67502291 205 - 0.000 0.155 13.071
ENSG00000110697 E042 3.0556049 0.0054227135 3.900326e-01 6.755179e-01 11 67502292 67502296 5 - 0.666 0.553 -0.498
ENSG00000110697 E043 7.6029589 0.0365166186 5.516057e-01 7.954550e-01 11 67502297 67502413 117 - 0.972 0.895 -0.290
ENSG00000110697 E044 3.8954288 0.0308138939 1.050860e-01 3.390385e-01 11 67502504 67502532 29 - 0.800 0.578 -0.931
ENSG00000110697 E045 11.3332073 0.0013445827 4.445294e-03 4.564106e-02 11 67502533 67502718 186 - 1.207 0.971 -0.852
ENSG00000110697 E046 0.0000000       11 67503840 67503876 37 -      
ENSG00000110697 E047 6.0020204 0.0026754565 2.830515e-01 5.767025e-01 11 67504103 67504221 119 - 0.902 0.788 -0.442
ENSG00000110697 E048 0.3561095 0.5467888981 2.152164e-01   11 67504222 67504369 148 - 0.265 0.000 -14.234
ENSG00000110697 E049 0.2541163 0.0161007892 3.488306e-01   11 67504522 67504557 36 - 0.000 0.155 13.071
ENSG00000110697 E050 1.2408046 0.0107554783 3.918864e-01 6.769622e-01 11 67504794 67505187 394 - 0.264 0.398 0.840
ENSG00000110697 E051 6.0358349 0.0266074543 9.513409e-01 9.877791e-01 11 67505188 67505377 190 - 0.837 0.845 0.032
ENSG00000110697 E052 0.0000000       11 67506176 67506263 88 -      

Help

Please Click HERE to learn more details about the results from DEXseq.