ENSG00000110955

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000262030 ENSG00000110955 No_inf pgKDN_inf ATP5F1B protein_coding protein_coding 294.3721 210.4926 346.1122 4.195846 3.543665 0.7174436 261.17254 183.5819 317.97873 1.261685 3.219342 0.7924736 0.8854167 0.873075 0.919175 0.0461 0.24291878 0.01164477 FALSE  
ENST00000550162 ENSG00000110955 No_inf pgKDN_inf ATP5F1B protein_coding protein_coding_CDS_not_defined 294.3721 210.4926 346.1122 4.195846 3.543665 0.7174436 13.89684 20.5218 10.19893 2.539141 2.219607 -1.0080284 0.0534000 0.097100 0.029400 -0.0677 0.01164477 0.01164477 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000110955 E001 79.2211011 3.204327e-04 6.339079e-01 8.435318e-01 12 56638175 56638279 105 - 1.905 1.889 -0.054
ENSG00000110955 E002 157.2020667 1.609296e-03 4.858735e-01 7.496810e-01 12 56638280 56638375 96 - 2.185 2.206 0.070
ENSG00000110955 E003 140.3990558 2.201085e-04 3.513480e-03 3.885200e-02 12 56638376 56638423 48 - 2.111 2.187 0.256
ENSG00000110955 E004 188.2386588 4.542727e-04 4.875184e-03 4.870128e-02 12 56639106 56639187 82 - 2.242 2.309 0.222
ENSG00000110955 E005 97.2938568 1.768092e-04 3.042205e-02 1.640949e-01 12 56639188 56639196 9 - 1.957 2.025 0.226
ENSG00000110955 E006 222.7918514 6.301079e-04 1.002292e-02 8.043091e-02 12 56639197 56639307 111 - 2.319 2.377 0.194
ENSG00000110955 E007 2.4846021 6.595242e-02 2.125966e-02 1.318710e-01 12 56639308 56639418 111 - 0.343 0.715 1.798
ENSG00000110955 E008 0.6257075 1.481459e-02 7.281506e-02 2.741124e-01 12 56639959 56639979 21 - 0.079 0.341 2.575
ENSG00000110955 E009 107.8243591 2.010936e-03 2.445202e-02 1.434877e-01 12 56639980 56639990 11 - 1.997 2.075 0.261
ENSG00000110955 E010 252.4216943 1.816283e-04 7.098570e-02 2.699198e-01 12 56639991 56640099 109 - 2.383 2.419 0.119
ENSG00000110955 E011 169.2289276 9.965577e-05 8.923430e-01 9.641748e-01 12 56640100 56640150 51 - 2.226 2.224 -0.009
ENSG00000110955 E012 119.1937483 1.378273e-04 7.390206e-01 8.965205e-01 12 56640151 56640159 9 - 2.070 2.080 0.033
ENSG00000110955 E013 146.1952998 1.135669e-04 2.562241e-01 5.482762e-01 12 56640160 56640192 33 - 2.150 2.179 0.098
ENSG00000110955 E014 292.8251393 6.981435e-05 7.614301e-01 9.068759e-01 12 56642458 56642580 123 - 2.460 2.466 0.020
ENSG00000110955 E015 129.4738311 1.446690e-04 3.709770e-01 6.590824e-01 12 56642673 56642684 12 - 2.099 2.124 0.082
ENSG00000110955 E016 151.7006289 1.178789e-04 1.803098e-01 4.557944e-01 12 56642685 56642710 26 - 2.164 2.197 0.113
ENSG00000110955 E017 268.6613096 8.205353e-05 2.807877e-01 5.739317e-01 12 56642711 56642831 121 - 2.416 2.437 0.068
ENSG00000110955 E018 26.0498434 1.865053e-03 5.252436e-15 8.908330e-13 12 56642832 56643178 347 - 1.159 1.641 1.669
ENSG00000110955 E019 129.1236387 1.497916e-04 8.922788e-01 9.641748e-01 12 56643403 56643419 17 - 2.107 2.111 0.014
ENSG00000110955 E020 119.3083909 1.423213e-04 7.101283e-01 8.827949e-01 12 56643420 56643420 1 - 2.070 2.081 0.037
ENSG00000110955 E021 332.1168455 2.168175e-04 4.570247e-01 7.291575e-01 12 56643421 56643587 167 - 2.522 2.510 -0.041
ENSG00000110955 E022 179.2459256 2.755229e-04 3.467367e-03 3.848540e-02 12 56643837 56643903 67 - 2.278 2.209 -0.230
ENSG00000110955 E023 178.6796097 1.103951e-03 2.597888e-03 3.095769e-02 12 56643904 56643958 55 - 2.280 2.201 -0.266
ENSG00000110955 E024 108.6942819 4.956823e-04 3.958559e-03 4.212725e-02 12 56644781 56644783 3 - 2.069 1.981 -0.296
ENSG00000110955 E025 309.5883584 8.148564e-05 7.598870e-07 3.649487e-05 12 56644784 56644955 172 - 2.520 2.435 -0.286
ENSG00000110955 E026 113.2211988 1.442561e-04 2.130534e-05 6.484661e-04 12 56645171 56645217 47 - 2.100 1.975 -0.418
ENSG00000110955 E027 154.1112216 1.073050e-04 7.711263e-04 1.228654e-02 12 56645218 56645353 136 - 2.218 2.135 -0.279
ENSG00000110955 E028 116.0883322 9.334309e-04 1.180927e-01 3.630629e-01 12 56645837 56645984 148 - 2.082 2.034 -0.161

Help

Please Click HERE to learn more details about the results from DEXseq.