ENSG00000112759

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000371755 ENSG00000112759 No_inf pgKDN_inf SLC29A1 protein_coding protein_coding 15.56247 13.74586 17.38503 0.4094072 0.4669856 0.3386287 5.2398179 2.564352 9.72030100 2.5643515 3.46276704 1.91827537 0.31090833 0.172950 0.560750 0.387800 0.37379083 0.02044944 FALSE TRUE
ENST00000393844 ENSG00000112759 No_inf pgKDN_inf SLC29A1 protein_coding protein_coding 15.56247 13.74586 17.38503 0.4094072 0.4669856 0.3386287 0.4846322 1.175911 0.27798535 0.6985195 0.27798535 -2.04192876 0.03478333 0.087275 0.017075 -0.070200 0.78549847 0.02044944 FALSE TRUE
ENST00000646878 ENSG00000112759 No_inf pgKDN_inf SLC29A1 protein_coding retained_intron 15.56247 13.74586 17.38503 0.4094072 0.4669856 0.3386287 0.9174810 2.104938 0.08554184 0.6052912 0.08554184 -4.46833880 0.06438333 0.154875 0.004650 -0.150225 0.02044944 0.02044944   FALSE
ENST00000652680 ENSG00000112759 No_inf pgKDN_inf SLC29A1 protein_coding protein_coding 15.56247 13.74586 17.38503 0.4094072 0.4669856 0.3386287 0.5836435 0.000000 1.10647343 0.0000000 0.83046494 6.80280510 0.03525833 0.000000 0.060450 0.060450 0.53643400 0.02044944 FALSE TRUE
MSTRG.24745.8 ENSG00000112759 No_inf pgKDN_inf SLC29A1 protein_coding   15.56247 13.74586 17.38503 0.4094072 0.4669856 0.3386287 5.7276820 4.026468 4.19999384 1.7349549 3.38564362 0.06072452 0.37992500 0.300500 0.243875 -0.056625 0.80793457 0.02044944 FALSE TRUE
MSTRG.24745.9 ENSG00000112759 No_inf pgKDN_inf SLC29A1 protein_coding   15.56247 13.74586 17.38503 0.4094072 0.4669856 0.3386287 1.1717772 2.578986 0.60767040 0.5964146 0.13233085 -2.06747805 0.08150000 0.188500 0.035025 -0.153475 0.06782141 0.02044944 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000112759 E001 0.0000000       6 44219553 44219614 62 +      
ENSG00000112759 E002 0.1186381 0.011872855 0.6200121148   6 44219615 44219627 13 + 0.089 0.000 -10.270
ENSG00000112759 E003 0.1186381 0.011872855 0.6200121148   6 44219628 44219629 2 + 0.089 0.000 -12.705
ENSG00000112759 E004 0.3634051 0.016612762 0.6762091770   6 44219630 44219635 6 + 0.162 0.102 -0.775
ENSG00000112759 E005 1.1064286 0.012051998 0.5874794759 0.816942582 6 44219636 44219782 147 + 0.280 0.366 0.547
ENSG00000112759 E006 0.0000000       6 44221586 44221685 100 +      
ENSG00000112759 E007 0.2363338 0.015742596 0.2953392064   6 44223559 44223585 27 + 0.162 0.000 -13.594
ENSG00000112759 E008 0.6076078 0.016843117 0.7744735582 0.913294929 6 44223586 44223594 9 + 0.225 0.184 -0.360
ENSG00000112759 E009 0.8518741 0.012821571 0.8508452836 0.947214621 6 44223595 44223600 6 + 0.280 0.254 -0.190
ENSG00000112759 E010 0.9705122 0.011475515 0.6131253311 0.831810392 6 44223601 44223613 13 + 0.329 0.254 -0.512
ENSG00000112759 E011 1.5866792 0.009310803 0.9847583187 0.998983470 6 44223614 44223641 28 + 0.412 0.413 0.003
ENSG00000112759 E012 0.0000000       6 44223792 44223793 2 +      
ENSG00000112759 E013 0.0000000       6 44223794 44223799 6 +      
ENSG00000112759 E014 0.0000000       6 44223800 44223820 21 +      
ENSG00000112759 E015 0.2356421 0.015760131 0.2952647228   6 44223821 44223925 105 + 0.162 0.000 -13.594
ENSG00000112759 E016 0.0000000       6 44223926 44223955 30 +      
ENSG00000112759 E017 0.3726934 0.016738783 0.4984914653   6 44225697 44225924 228 + 0.089 0.184 1.225
ENSG00000112759 E018 0.0000000       6 44225925 44225972 48 +      
ENSG00000112759 E019 0.0000000       6 44225973 44226060 88 +      
ENSG00000112759 E020 1.2171070 0.010731226 0.6841800117 0.869250777 6 44226061 44226167 107 + 0.373 0.314 -0.360
ENSG00000112759 E021 0.0000000       6 44226628 44226753 126 +      
ENSG00000112759 E022 0.0000000       6 44226754 44226790 37 +      
ENSG00000112759 E023 0.1265070 0.012332026 0.4658617912   6 44226791 44227003 213 + 0.000 0.102 12.132
ENSG00000112759 E024 0.0000000       6 44227004 44227039 36 +      
ENSG00000112759 E025 0.0000000       6 44227139 44227259 121 +      
ENSG00000112759 E026 0.5086410 0.183575902 0.0530404189 0.229045034 6 44227260 44227262 3 + 0.000 0.314 13.629
ENSG00000112759 E027 6.9550517 0.043862794 0.9849452971 0.998995064 6 44227263 44227342 80 + 0.904 0.897 -0.028
ENSG00000112759 E028 8.4058208 0.027648949 0.7033047771 0.879216555 6 44229390 44229471 82 + 0.992 0.951 -0.153
ENSG00000112759 E029 13.3252212 0.006302233 0.7941777221 0.921496456 6 44229589 44229770 182 + 1.143 1.169 0.093
ENSG00000112759 E030 4.7321638 0.003541064 0.1851481882 0.462690315 6 44229771 44229791 21 + 0.823 0.673 -0.612
ENSG00000112759 E031 4.3828933 0.003163865 0.5666573739 0.804705745 6 44229907 44229932 26 + 0.760 0.696 -0.261
ENSG00000112759 E032 8.9142973 0.001599603 0.9800619396 0.997709714 6 44229933 44230046 114 + 0.993 1.000 0.027
ENSG00000112759 E033 3.5021999 0.004457419 0.0005404816 0.009274686 6 44230047 44230346 300 + 0.373 0.834 2.099
ENSG00000112759 E034 4.6351910 0.008151701 0.8382112461 0.942043474 6 44230347 44230366 20 + 0.760 0.740 -0.080
ENSG00000112759 E035 7.3096981 0.002172509 0.6302422645 0.841415077 6 44230367 44230481 115 + 0.939 0.897 -0.162
ENSG00000112759 E036 8.9213776 0.005662626 0.9874223389 0.999730363 6 44230568 44230665 98 + 0.993 1.000 0.027
ENSG00000112759 E037 10.7752653 0.014344968 0.6938499091 0.874894967 6 44230811 44230889 79 + 1.049 1.093 0.159
ENSG00000112759 E038 12.6751761 0.001544138 0.5118537459 0.769021113 6 44231364 44231461 98 + 1.157 1.111 -0.166
ENSG00000112759 E039 9.3380301 0.001953805 0.1190566149 0.364675117 6 44231998 44232055 58 + 1.074 0.938 -0.502
ENSG00000112759 E040 8.2066963 0.001772421 0.0086680472 0.073092245 6 44232056 44232106 51 + 1.066 0.817 -0.937
ENSG00000112759 E041 11.0808739 0.003231706 0.5000407309 0.760198028 6 44232343 44232428 86 + 1.106 1.054 -0.190
ENSG00000112759 E042 1.6321941 0.009203800 0.0045217383 0.046162301 6 44232429 44232806 378 + 0.162 0.592 2.684
ENSG00000112759 E043 25.0057075 0.005067007 0.1646265525 0.433903882 6 44232807 44233006 200 + 1.369 1.459 0.310
ENSG00000112759 E044 58.8199555 0.010630891 0.5527012857 0.796130846 6 44233417 44234142 726 + 1.760 1.793 0.111

Help

Please Click HERE to learn more details about the results from DEXseq.