ENSG00000113163

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000380494 ENSG00000113163 No_inf pgKDN_inf CERT1 protein_coding protein_coding 10.55141 9.802092 11.45835 0.5576481 0.4333597 0.2250249 6.1620163 6.5322865 6.571617 0.2440166 0.3637557 0.008647247 0.58737500 0.669125 0.573350 -0.095775 7.347858e-01 1.585274e-06 FALSE TRUE
ENST00000642556 ENSG00000113163 No_inf pgKDN_inf CERT1 protein_coding protein_coding 10.55141 9.802092 11.45835 0.5576481 0.4333597 0.2250249 1.3356983 0.0000000 3.059059 0.0000000 0.1995204 8.261652742 0.11791667 0.000000 0.267275 0.267275 1.585274e-06 1.585274e-06 FALSE TRUE
ENST00000643773 ENSG00000113163 No_inf pgKDN_inf CERT1 protein_coding protein_coding 10.55141 9.802092 11.45835 0.5576481 0.4333597 0.2250249 0.2217955 0.6653864 0.000000 0.6653864 0.0000000 -6.077641201 0.01985833 0.059575 0.000000 -0.059575 8.370945e-01 1.585274e-06   FALSE
ENST00000643780 ENSG00000113163 No_inf pgKDN_inf CERT1 protein_coding protein_coding 10.55141 9.802092 11.45835 0.5576481 0.4333597 0.2250249 1.1251454 0.8570792 1.045598 0.1386629 0.1647153 0.283824969 0.10678333 0.088425 0.091450 0.003025 1.000000e+00 1.585274e-06 FALSE TRUE
ENST00000646713 ENSG00000113163 No_inf pgKDN_inf CERT1 protein_coding protein_coding 10.55141 9.802092 11.45835 0.5576481 0.4333597 0.2250249 0.5379521 0.4307103 0.000000 0.4307103 0.0000000 -5.461758732 0.05508333 0.044375 0.000000 -0.044375 8.387435e-01 1.585274e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000113163 E001 0.0000000       5 75356345 75356351 7 -      
ENSG00000113163 E002 0.5982308 0.0151392976 0.1996179577 0.48132130 5 75356352 75357012 661 - 0.289 0.098 -1.893
ENSG00000113163 E003 0.0000000       5 75368486 75368486 1 -      
ENSG00000113163 E004 0.0000000       5 75368487 75368487 1 -      
ENSG00000113163 E005 0.1265070 0.0122171883 0.5007786968   5 75368488 75368517 30 - 0.000 0.098 11.178
ENSG00000113163 E006 0.3802150 0.0228997547 0.0906867014   5 75368518 75368615 98 - 0.000 0.246 12.610
ENSG00000113163 E007 0.4995474 0.0169625004 0.2858628619   5 75368616 75368658 43 - 0.092 0.246 1.691
ENSG00000113163 E008 0.6348960 0.0143121646 0.0165076798 0.11187801 5 75368659 75369236 578 - 0.000 0.356 13.271
ENSG00000113163 E009 3.4761371 0.0041656869 0.0370176794 0.18525671 5 75369237 75370963 1727 - 0.495 0.765 1.185
ENSG00000113163 E010 0.6099697 0.0159337150 0.7157997335 0.88542027 5 75370964 75371119 156 - 0.232 0.178 -0.478
ENSG00000113163 E011 0.4831157 0.0170933440 0.3557978338   5 75371120 75371120 1 - 0.232 0.098 -1.478
ENSG00000113163 E012 70.5062653 0.0002486328 0.0006899687 0.01122557 5 75371121 75372330 1210 - 1.796 1.906 0.369
ENSG00000113163 E013 1.5961203 0.0111322347 0.6832526028 0.86880592 5 75372331 75372418 88 - 0.383 0.444 0.329
ENSG00000113163 E014 1.8334616 0.0092338784 0.9112236600 0.97178698 5 75372419 75372430 12 - 0.460 0.444 -0.086
ENSG00000113163 E015 8.9674140 0.0093474021 0.4020054426 0.68513435 5 75372431 75372597 167 - 0.955 1.038 0.304
ENSG00000113163 E016 40.9238848 0.0003442410 0.2916907521 0.58512424 5 75372598 75373269 672 - 1.599 1.645 0.158
ENSG00000113163 E017 6.2326271 0.0023269938 0.8753597405 0.95746521 5 75373270 75373362 93 - 0.867 0.851 -0.063
ENSG00000113163 E018 24.1211989 0.0133843949 0.2690789816 0.56263670 5 75373363 75373962 600 - 1.438 1.359 -0.275
ENSG00000113163 E019 9.8601330 0.0185212509 0.1009564308 0.33172903 5 75373963 75374154 192 - 0.944 1.112 0.617
ENSG00000113163 E020 3.3297667 0.0723093518 0.3674187345 0.65601012 5 75374155 75374155 1 - 0.556 0.704 0.647
ENSG00000113163 E021 4.6566405 0.0494593132 0.8927322389 0.96441904 5 75374156 75374191 36 - 0.739 0.765 0.106
ENSG00000113163 E022 2.8876477 0.0157201149 0.0251097513 0.14573005 5 75377775 75378517 743 - 0.720 0.402 -1.478
ENSG00000113163 E023 3.2015900 0.0336090261 0.3693977827 0.65759316 5 75378518 75379336 819 - 0.556 0.682 0.554
ENSG00000113163 E024 2.8233085 0.2133256500 0.9749819142 0.99541136 5 75379337 75379354 18 - 0.556 0.607 0.232
ENSG00000113163 E025 3.8063774 0.1262287381 0.8585199892 0.95066052 5 75379355 75379399 45 - 0.657 0.704 0.199
ENSG00000113163 E026 2.9619330 0.0246578469 0.3529050713 0.64282532 5 75379400 75379418 19 - 0.526 0.659 0.592
ENSG00000113163 E027 4.9263729 0.0059538260 0.2471400073 0.53775161 5 75379419 75379459 41 - 0.700 0.835 0.543
ENSG00000113163 E028 3.9545063 0.0577132145 0.1739628597 0.44744684 5 75379460 75379473 14 - 0.583 0.784 0.844
ENSG00000113163 E029 3.9545063 0.0577132145 0.1739628597 0.44744684 5 75381072 75381072 1 - 0.583 0.784 0.844
ENSG00000113163 E030 7.7012976 0.0062970277 0.9344687380 0.98106717 5 75381073 75381144 72 - 0.944 0.935 -0.031
ENSG00000113163 E031 5.8211587 0.1145544775 0.3103137635 0.60350361 5 75381145 75381201 57 - 0.907 0.746 -0.630
ENSG00000113163 E032 9.1041076 0.0361382802 0.1779830821 0.45279904 5 75381949 75382077 129 - 1.074 0.923 -0.558
ENSG00000113163 E033 6.3602631 0.0179065378 0.9831423905 0.99869026 5 75384642 75384712 71 - 0.867 0.866 -0.005
ENSG00000113163 E034 3.1117184 0.0056173227 0.0167758791 0.11297169 5 75385902 75385947 46 - 0.423 0.746 1.469
ENSG00000113163 E035 4.8733920 0.0135615759 0.5021432597 0.76194560 5 75385948 75386034 87 - 0.808 0.726 -0.330
ENSG00000113163 E036 0.0000000       5 75386035 75386057 23 -      
ENSG00000113163 E037 6.1791521 0.0022949372 0.0648202821 0.25657842 5 75389592 75389687 96 - 0.944 0.746 -0.768
ENSG00000113163 E038 0.8333660 0.0156919516 0.0624554756 0.25113499 5 75399310 75399387 78 - 0.383 0.098 -2.478
ENSG00000113163 E039 5.4698747 0.0024803279 0.2733549246 0.56708687 5 75400205 75400291 87 - 0.867 0.746 -0.478
ENSG00000113163 E040 3.1572595 0.0045341371 0.3233443565 0.61598514 5 75400292 75400297 6 - 0.679 0.549 -0.571
ENSG00000113163 E041 0.1265070 0.0122171883 0.5007786968   5 75400298 75402674 2377 - 0.000 0.098 11.178
ENSG00000113163 E042 0.0000000       5 75402675 75402792 118 -      
ENSG00000113163 E043 0.0000000       5 75402793 75402971 179 -      
ENSG00000113163 E044 6.2768063 0.0022007413 0.0111523558 0.08635910 5 75402972 75403058 87 - 0.977 0.704 -1.063
ENSG00000113163 E045 0.1176306 0.0116288180 0.5779393787   5 75410690 75411010 321 - 0.092 0.000 -11.959
ENSG00000113163 E046 5.7943443 0.0291106581 0.0396261134 0.19300661 5 75411011 75411103 93 - 0.944 0.682 -1.031
ENSG00000113163 E047 7.8900258 0.0027218874 0.1184813080 0.36356211 5 75416876 75417010 135 - 1.019 0.866 -0.571
ENSG00000113163 E048 3.4999284 0.0041385854 0.0632105076 0.25290768 5 75417011 75417033 23 - 0.757 0.517 -1.045
ENSG00000113163 E049 6.0266264 0.0025610931 0.0038058809 0.04103686 5 75419341 75419424 84 - 0.977 0.659 -1.256
ENSG00000113163 E050 0.0000000       5 75425270 75425291 22 -      
ENSG00000113163 E051 0.0000000       5 75425292 75425360 69 -      
ENSG00000113163 E052 7.9136590 0.0018881389 0.2844813262 0.57820518 5 75425361 75425494 134 - 0.998 0.895 -0.386
ENSG00000113163 E053 2.0746827 0.1517344735 0.9198927746 0.97503138 5 75425495 75425499 5 - 0.494 0.482 -0.061
ENSG00000113163 E054 4.6576920 0.0428041800 0.8635437507 0.95278958 5 75426371 75426478 108 - 0.739 0.765 0.107
ENSG00000113163 E055 4.4020379 0.0207484485 0.9089173320 0.97112755 5 75459065 75459181 117 - 0.739 0.726 -0.054
ENSG00000113163 E056 0.3724725 0.0168158039 0.5397877134   5 75505230 75505981 752 - 0.092 0.178 1.107
ENSG00000113163 E057 5.1589389 0.0034028273 0.3977936534 0.68187973 5 75505982 75506116 135 - 0.739 0.835 0.382
ENSG00000113163 E058 8.6536653 0.0074591822 0.4625205748 0.73291764 5 75511112 75511428 317 - 1.019 0.948 -0.261
ENSG00000113163 E059 3.1619824 0.0941299255 0.4052894594 0.68803531 5 75511429 75511505 77 - 0.679 0.549 -0.572
ENSG00000113163 E060 3.4910135 0.0041662955 0.0249288186 0.14513287 5 75511506 75511638 133 - 0.775 0.482 -1.286
ENSG00000113163 E061 0.0000000       5 75511759 75512138 380 -      

Help

Please Click HERE to learn more details about the results from DEXseq.