ENSG00000113569

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000231498 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding protein_coding 11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 3.2181224 2.201136 3.8451458 0.3071112 1.3032302 0.8019975 0.27137500 0.265950 0.277225 0.011275 0.9892046904 0.0001726427 FALSE TRUE
ENST00000381843 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding protein_coding 11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 1.3152949 0.000000 2.7944132 0.0000000 0.4453031 8.1315551 0.09495000 0.000000 0.199400 0.199400 0.0001726427 0.0001726427 FALSE TRUE
ENST00000502533 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding protein_coding_CDS_not_defined 11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 3.3422530 2.518207 3.2866572 0.4868617 1.3658860 0.3828895 0.28160833 0.302125 0.229400 -0.072725 0.8415990708 0.0001726427 FALSE TRUE
ENST00000508182 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding retained_intron 11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 0.2126237 0.637871 0.0000000 0.6378710 0.0000000 -6.0176346 0.02105000 0.063150 0.000000 -0.063150 0.8159842540 0.0001726427   FALSE
ENST00000513532 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding protein_coding 11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 0.7491654 0.000000 1.3089965 0.0000000 1.3089965 7.0432970 0.05705000 0.000000 0.093200 0.093200 0.9057405289 0.0001726427 FALSE TRUE
MSTRG.22797.1 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding   11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 2.1870017 1.218677 2.2315658 0.7040424 1.4976172 0.8674010 0.19194167 0.170925 0.166100 -0.004825 1.0000000000 0.0001726427 FALSE TRUE
MSTRG.22797.3 ENSG00000113569 No_inf pgKDN_inf NUP155 protein_coding   11.79754 8.225102 13.94345 0.7584656 0.8053644 0.7607636 0.6505378 1.649211 0.3024023 0.5985928 0.3024023 -2.4090203 0.07339167 0.197850 0.022325 -0.175525 0.2601555457 0.0001726427 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000113569 E001 0.9603148 0.0120652138 4.216661e-01 7.008147e-01 5 37288124 37288136 13 - 0.335 0.209 -0.908
ENSG00000113569 E002 1.6939890 0.0582409714 8.520043e-01 9.476788e-01 5 37288137 37288208 72 - 0.438 0.406 -0.170
ENSG00000113569 E003 95.0018923 0.0011816923 3.461846e-08 2.214842e-06 5 37288209 37291632 3424 - 1.901 2.064 0.547
ENSG00000113569 E004 7.1194096 0.0098429317 1.524097e-02 1.063180e-01 5 37291633 37291837 205 - 0.780 1.038 0.977
ENSG00000113569 E005 2.9537792 0.0051269756 5.304634e-02 2.290450e-01 5 37291838 37291838 1 - 0.468 0.727 1.163
ENSG00000113569 E006 6.2414855 0.0586335840 1.735921e-01 4.468982e-01 5 37291839 37291899 61 - 0.766 0.957 0.735
ENSG00000113569 E007 13.1916068 0.0015844124 6.787377e-02 2.629019e-01 5 37291900 37292038 139 - 1.080 1.225 0.517
ENSG00000113569 E008 15.0874117 0.0168045882 4.271223e-01 7.056429e-01 5 37292879 37292985 107 - 1.168 1.241 0.256
ENSG00000113569 E009 0.1186381 0.0118227197 8.928065e-01   5 37292986 37293174 189 - 0.077 0.000 -9.756
ENSG00000113569 E010 17.7520463 0.0010576722 9.556574e-02 3.218585e-01 5 37294329 37294465 137 - 1.309 1.192 -0.412
ENSG00000113569 E011 15.3922193 0.0008526078 5.858819e-01 8.161941e-01 5 37298868 37298978 111 - 1.222 1.183 -0.139
ENSG00000113569 E012 12.7837636 0.0041717668 3.824317e-01 6.686654e-01 5 37299448 37299568 121 - 1.101 1.174 0.262
ENSG00000113569 E013 0.0000000       5 37301014 37301436 423 -      
ENSG00000113569 E014 11.9350298 0.0013638705 3.835561e-01 6.696288e-01 5 37301437 37301550 114 - 1.073 1.146 0.262
ENSG00000113569 E015 12.7351980 0.0012541268 6.190422e-01 8.352915e-01 5 37302779 37302908 130 - 1.145 1.106 -0.141
ENSG00000113569 E016 12.7559121 0.0139335887 9.501958e-01 9.871303e-01 5 37303260 37303414 155 - 1.133 1.126 -0.024
ENSG00000113569 E017 0.0000000       5 37303415 37303416 2 -      
ENSG00000113569 E018 7.7784029 0.0022587027 9.341498e-01 9.810237e-01 5 37304739 37304843 105 - 0.932 0.941 0.036
ENSG00000113569 E019 12.1808812 0.0088387879 1.314321e-01 3.845844e-01 5 37305057 37305210 154 - 1.163 1.025 -0.498
ENSG00000113569 E020 11.7649851 0.0127023669 6.564682e-01 8.561884e-01 5 37307297 37307432 136 - 1.114 1.073 -0.148
ENSG00000113569 E021 11.3290222 0.0277792238 6.923887e-01 8.741407e-01 5 37309129 37309267 139 - 1.066 1.106 0.143
ENSG00000113569 E022 0.0000000       5 37309404 37309572 169 -      
ENSG00000113569 E023 9.4918183 0.0227657093 8.494749e-01 9.464579e-01 5 37310552 37310743 192 - 1.004 1.025 0.076
ENSG00000113569 E024 7.6885645 0.0024342006 3.431836e-01 6.344243e-01 5 37314198 37314326 129 - 0.891 0.985 0.355
ENSG00000113569 E025 3.2907835 0.0061107079 5.365591e-01 7.858034e-01 5 37314327 37314328 2 - 0.591 0.673 0.355
ENSG00000113569 E026 8.1159019 0.0064864417 6.603330e-01 8.582911e-01 5 37317988 37318085 98 - 0.970 0.926 -0.164
ENSG00000113569 E027 9.0533045 0.0031414027 1.003037e-01 3.307841e-01 5 37323992 37324107 116 - 1.052 0.893 -0.591
ENSG00000113569 E028 8.6923524 0.0016311400 1.580215e-01 4.248123e-01 5 37325901 37325967 67 - 1.029 0.893 -0.507
ENSG00000113569 E029 10.1291486 0.0014584013 9.264294e-02 3.161607e-01 5 37327629 37327776 148 - 1.094 0.941 -0.562
ENSG00000113569 E030 5.9039976 0.0063705224 1.537314e-01 4.185858e-01 5 37328358 37328420 63 - 0.891 0.727 -0.645
ENSG00000113569 E031 4.9640044 0.0028637716 5.628883e-01 8.025277e-01 5 37329190 37329278 89 - 0.794 0.727 -0.270
ENSG00000113569 E032 4.4807924 0.0032035984 6.715100e-01 8.637149e-01 5 37330038 37330132 95 - 0.752 0.701 -0.207
ENSG00000113569 E033 5.6755688 0.0038026039 3.519363e-01 6.420638e-01 5 37331685 37331795 111 - 0.857 0.751 -0.416
ENSG00000113569 E034 6.6361234 0.0027423733 1.448213e-01 4.051029e-01 5 37333463 37333633 171 - 0.932 0.775 -0.608
ENSG00000113569 E035 3.5039560 0.0062560265 4.057892e-01 6.884423e-01 5 37337818 37337918 101 - 0.688 0.578 -0.475
ENSG00000113569 E036 4.8118142 0.0032753255 7.225749e-02 2.726795e-01 5 37341090 37341242 153 - 0.833 0.612 -0.908
ENSG00000113569 E037 0.0000000       5 37342397 37342548 152 -      
ENSG00000113569 E038 2.8924973 0.0053946786 3.407966e-01 6.323923e-01 5 37342549 37342646 98 - 0.633 0.501 -0.603
ENSG00000113569 E039 3.8600498 0.0267210204 4.405097e-01 7.162416e-01 5 37348505 37348596 92 - 0.721 0.612 -0.460
ENSG00000113569 E040 2.9990550 0.0059025276 1.276801e-01 3.788052e-01 5 37349172 37349245 74 - 0.670 0.456 -0.986
ENSG00000113569 E041 2.9825944 0.0047647741 1.437871e-02 1.021068e-01 5 37350160 37350216 57 - 0.705 0.350 -1.715
ENSG00000113569 E042 3.3756514 0.0044733220 2.727210e-01 5.664253e-01 5 37350217 37350265 49 - 0.688 0.541 -0.645
ENSG00000113569 E043 6.3721453 0.0874362969 1.020279e-01 3.337305e-01 5 37351190 37351356 167 - 0.942 0.701 -0.946
ENSG00000113569 E044 2.8671529 0.1389264339 9.360613e-02 3.181393e-01 5 37352737 37352829 93 - 0.688 0.350 -1.645
ENSG00000113569 E045 2.9945675 0.0703109666 9.472973e-02 3.202244e-01 5 37358081 37358151 71 - 0.688 0.406 -1.323
ENSG00000113569 E046 3.2530157 0.0054912974 1.707781e-01 4.430614e-01 5 37363888 37363984 97 - 0.688 0.501 -0.838
ENSG00000113569 E047 4.4172782 0.0031728022 3.167534e-03 3.592803e-02 5 37364247 37364384 138 - 0.845 0.456 -1.692
ENSG00000113569 E048 0.4726025 0.0162892899 1.219834e-01   5 37370666 37370820 155 - 0.249 0.000 -11.562
ENSG00000113569 E049 5.1899808 0.0026976521 2.578277e-01 5.500664e-01 5 37370821 37371106 286 - 0.833 0.701 -0.529

Help

Please Click HERE to learn more details about the results from DEXseq.