ENSG00000113719

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000393784 ENSG00000113719 No_inf pgKDN_inf ERGIC1 protein_coding protein_coding 45.32847 33.1666 50.2101 0.6407907 1.802567 0.598099 31.907748 11.689669 39.712586 1.239603 6.801844 1.7634918 0.66449167 0.3514 0.797650 0.446250 0.005646507 0.003008925 FALSE TRUE
ENST00000691612 ENSG00000113719 No_inf pgKDN_inf ERGIC1 protein_coding nonsense_mediated_decay 45.32847 33.1666 50.2101 0.6407907 1.802567 0.598099 4.906518 10.859589 0.000000 3.789705 0.000000 -10.0860817 0.13530000 0.3337 0.000000 -0.333700 0.003008925 0.003008925 FALSE TRUE
ENST00000692557 ENSG00000113719 No_inf pgKDN_inf ERGIC1 protein_coding protein_coding_CDS_not_defined 45.32847 33.1666 50.2101 0.6407907 1.802567 0.598099 3.998961 5.363252 6.633632 3.672471 6.633632 0.3061769 0.09444167 0.1570 0.126325 -0.030675 0.836911496 0.003008925 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000113719 E001 0.7049114 0.0231987908 3.359576e-02 1.743605e-01 5 172834251 172834299 49 + 0.344 0.000 -12.952
ENSG00000113719 E002 1.6500658 0.0208249381 4.735411e-04 8.365531e-03 5 172834300 172834315 16 + 0.581 0.000 -15.998
ENSG00000113719 E003 1.7687039 0.0082617811 2.309695e-04 4.707902e-03 5 172834316 172834318 3 + 0.604 0.000 -16.125
ENSG00000113719 E004 1.8863345 0.0075709808 1.349467e-04 3.037652e-03 5 172834319 172834324 6 + 0.625 0.000 -16.200
ENSG00000113719 E005 2.7299002 0.0051897945 7.916129e-04 1.250215e-02 5 172834325 172834327 3 + 0.718 0.203 -2.823
ENSG00000113719 E006 2.8486033 0.0050135055 5.074805e-04 8.842581e-03 5 172834328 172834331 4 + 0.734 0.203 -2.890
ENSG00000113719 E007 3.0941605 0.0045807642 1.440115e-03 1.979892e-02 5 172834332 172834337 6 + 0.750 0.277 -2.370
ENSG00000113719 E008 3.9539057 0.0037869092 2.339318e-02 1.397373e-01 5 172834338 172834346 9 + 0.794 0.490 -1.324
ENSG00000113719 E009 4.8061602 0.0049185708 5.077764e-02 2.228893e-01 5 172834347 172834353 7 + 0.847 0.600 -1.016
ENSG00000113719 E010 5.3067124 0.0048278753 1.593001e-01 4.266196e-01 5 172834354 172834384 31 + 0.859 0.688 -0.685
ENSG00000113719 E011 5.0885695 0.0189990925 6.034155e-01 8.269960e-01 5 172834385 172834389 5 + 0.808 0.738 -0.279
ENSG00000113719 E012 5.2088417 0.0186398519 5.313402e-01 7.820069e-01 5 172834390 172834402 13 + 0.821 0.738 -0.331
ENSG00000113719 E013 4.6183578 0.0212711743 9.521183e-01 9.879858e-01 5 172834403 172834410 8 + 0.750 0.738 -0.048
ENSG00000113719 E014 5.8420999 0.0056182876 8.090330e-01 9.294987e-01 5 172834411 172834433 23 + 0.821 0.843 0.084
ENSG00000113719 E015 0.1265070 0.0122271106 3.526617e-01   5 172835817 172835886 70 + 0.000 0.113 12.380
ENSG00000113719 E016 0.3716209 0.0163754868 3.615432e-01   5 172853126 172853429 304 + 0.080 0.203 1.569
ENSG00000113719 E017 0.1170040 0.0116474404 8.202258e-01   5 172856091 172856311 221 + 0.080 0.000 -12.618
ENSG00000113719 E018 0.0000000       5 172878275 172878501 227 +      
ENSG00000113719 E019 12.9300327 0.0094689788 7.983452e-02 2.899916e-01 5 172888699 172888760 62 + 1.201 1.035 -0.596
ENSG00000113719 E020 21.0852795 0.0076349010 1.986370e-01 4.800507e-01 5 172897002 172897074 73 + 1.379 1.276 -0.357
ENSG00000113719 E021 1.2041114 0.1910522339 5.400961e-01 7.882672e-01 5 172897836 172898585 750 + 0.381 0.277 -0.652
ENSG00000113719 E022 0.0000000       5 172904404 172904486 83 +      
ENSG00000113719 E023 0.0000000       5 172905217 172905239 23 +      
ENSG00000113719 E024 0.0000000       5 172905240 172905474 235 +      
ENSG00000113719 E025 0.1265070 0.0122271106 3.526617e-01   5 172906060 172906121 62 + 0.000 0.113 12.380
ENSG00000113719 E026 0.1265070 0.0122271106 3.526617e-01   5 172906122 172906180 59 + 0.000 0.113 12.380
ENSG00000113719 E027 26.3810056 0.0005854120 9.286996e-01 9.789172e-01 5 172909667 172909761 95 + 1.437 1.426 -0.038
ENSG00000113719 E028 0.0000000       5 172909762 172910508 747 +      
ENSG00000113719 E029 0.2363338 0.0160232917 4.170614e-01   5 172914565 172914713 149 + 0.147 0.000 -13.549
ENSG00000113719 E030 37.5868823 0.0003919689 8.483800e-01 9.463212e-01 5 172914714 172914838 125 + 1.580 1.583 0.011
ENSG00000113719 E031 0.4725375 0.0349997519 1.129745e-01   5 172914839 172915517 679 + 0.256 0.000 -14.393
ENSG00000113719 E032 0.7344617 0.0143410608 6.218882e-01 8.369955e-01 5 172915518 172915690 173 + 0.205 0.277 0.569
ENSG00000113719 E033 1.3421951 0.1217030544 7.381614e-01 8.960798e-01 5 172915691 172918335 2645 + 0.344 0.396 0.306
ENSG00000113719 E034 0.6154116 0.1305088372 3.994366e-01 6.832174e-01 5 172920364 172920484 121 + 0.147 0.277 1.154
ENSG00000113719 E035 0.2536433 0.0159595646 1.312745e-01   5 172920485 172920571 87 + 0.000 0.203 13.324
ENSG00000113719 E036 0.0000000       5 172921527 172921626 100 +      
ENSG00000113719 E037 0.7254005 0.0206108444 7.432434e-01 8.984570e-01 5 172922145 172922468 324 + 0.256 0.203 -0.431
ENSG00000113719 E038 33.1836501 0.0004240332 9.002056e-01 9.675847e-01 5 172924005 172924102 98 + 1.533 1.521 -0.042
ENSG00000113719 E039 16.6063828 0.0009722815 4.114928e-01 6.931372e-01 5 172924103 172924109 7 + 1.267 1.202 -0.230
ENSG00000113719 E040 0.3719033 0.1897563070 4.038193e-01   5 172924110 172924370 261 + 0.080 0.203 1.569
ENSG00000113719 E041 27.4646535 0.0071347934 8.891855e-01 9.630293e-01 5 172926509 172926569 61 + 1.455 1.440 -0.053
ENSG00000113719 E042 0.9985531 0.0121532483 4.623796e-02 2.108563e-01 5 172926712 172927099 388 + 0.147 0.445 2.154
ENSG00000113719 E043 0.1271363 0.0123008682 3.525826e-01   5 172931093 172931207 115 + 0.000 0.113 12.380
ENSG00000113719 E044 1.6048461 0.0082094209 1.211110e-01 3.682533e-01 5 172931883 172932435 553 + 0.302 0.530 1.247
ENSG00000113719 E045 31.2300116 0.0004635595 9.359916e-01 9.816864e-01 5 172932436 172932536 101 + 1.507 1.497 -0.035
ENSG00000113719 E046 2.3507638 0.0060853700 4.388107e-02 2.046063e-01 5 172932537 172933661 1125 + 0.381 0.661 1.347
ENSG00000113719 E047 4.3966281 0.0033565818 2.864731e-08 1.863769e-06 5 172933662 172935187 1526 + 0.302 0.998 3.154
ENSG00000113719 E048 16.4166285 0.0009129726 8.486634e-01 9.463831e-01 5 172935188 172935204 17 + 1.232 1.240 0.028
ENSG00000113719 E049 35.8301310 0.0003957676 2.484965e-01 5.393324e-01 5 172935205 172935310 106 + 1.539 1.590 0.174
ENSG00000113719 E050 2.2228353 0.0138086684 7.870543e-02 2.875558e-01 5 172935311 172938007 2697 + 0.381 0.631 1.221
ENSG00000113719 E051 414.9392569 0.0001152818 2.159694e-02 1.331515e-01 5 172950709 172952792 2084 + 2.606 2.623 0.058

Help

Please Click HERE to learn more details about the results from DEXseq.