ENSG00000115084

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000245680 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding protein_coding 48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 12.266957 8.2975243 15.788106 0.3483876 0.3998935 0.9272611 0.27433333 0.341900 0.244325 -0.097575 0.52832659 0.03415676 FALSE  
ENST00000409106 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding nonsense_mediated_decay 48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 4.876145 0.4035082 7.558109 0.2730660 0.4939386 4.1939450 0.08474167 0.018375 0.116075 0.097700 0.03415676 0.03415676 TRUE  
ENST00000420066 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding nonsense_mediated_decay 48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 16.521226 8.2271764 21.596537 0.9766126 2.1718198 1.3912461 0.33871667 0.330050 0.329550 -0.000500 1.00000000 0.03415676    
ENST00000447673 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding protein_coding 48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 1.224748 0.0000000 3.674245 0.0000000 1.2309076 8.5252253 0.01818333 0.000000 0.054550 0.054550 0.08830882 0.03415676 FALSE  
ENST00000459683 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding retained_intron 48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 4.692013 1.0558684 6.972306 0.6261891 1.2174713 2.7116743 0.08960000 0.046900 0.105150 0.058250 0.48702946 0.03415676 FALSE  
ENST00000470204 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding protein_coding_CDS_not_defined 48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 3.004742 4.0124846 1.572700 1.5115327 1.5727001 -1.3456990 0.07955000 0.153675 0.027150 -0.126525 0.18656129 0.03415676 TRUE  
MSTRG.16868.1 ENSG00000115084 No_inf pgKDN_inf SLC35F5 protein_coding   48.15773 24.64695 65.17947 1.352203 3.207379 1.402645 3.193885 1.3949048 4.137970 0.1727444 0.3761912 1.5619332 0.06539167 0.057300 0.063925 0.006625 0.95461681 0.03415676 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115084 E001 1.4353172 0.0232224687 2.246436e-01 5.121499e-01 2 113704861 113705010 150 - 0.431 0.232 -1.269
ENSG00000115084 E002 5.5242151 0.0024247396 2.010851e-01 4.832648e-01 2 113705011 113705548 538 - 0.842 0.688 -0.617
ENSG00000115084 E003 421.0933871 0.0001402180 1.325914e-16 2.658432e-14 2 113706709 113714352 7644 - 2.566 2.665 0.330
ENSG00000115084 E004 44.2115695 0.0003242958 7.124874e-01 8.838534e-01 2 113714353 113714646 294 - 1.638 1.622 -0.055
ENSG00000115084 E005 76.4866712 0.0031353692 8.885667e-01 9.627629e-01 2 113714647 113715041 395 - 1.869 1.863 -0.019
ENSG00000115084 E006 26.7900601 0.0009026293 4.437096e-01 7.184357e-01 2 113715042 113715157 116 - 1.437 1.391 -0.157
ENSG00000115084 E007 17.8207233 0.0015321199 1.478878e-01 4.094339e-01 2 113715158 113715195 38 - 1.287 1.179 -0.380
ENSG00000115084 E008 2.7558995 0.0090040909 2.578855e-01 5.500682e-01 2 113717453 113717752 300 - 0.608 0.441 -0.795
ENSG00000115084 E009 18.4225043 0.0009085731 1.219607e-01 3.694995e-01 2 113717753 113717780 28 - 1.302 1.189 -0.397
ENSG00000115084 E010 23.1555346 0.0005650853 3.070062e-01 6.002130e-01 2 113717781 113717848 68 - 1.382 1.317 -0.227
ENSG00000115084 E011 11.6017752 0.0034458173 9.520796e-01 9.879646e-01 2 113717849 113717850 2 - 1.081 1.077 -0.015
ENSG00000115084 E012 21.4760380 0.0036924674 5.399114e-01 7.881447e-01 2 113719154 113719211 58 - 1.344 1.302 -0.146
ENSG00000115084 E013 24.5072482 0.0005684664 1.157467e-02 8.852357e-02 2 113719212 113719280 69 - 1.434 1.270 -0.570
ENSG00000115084 E014 16.0673599 0.0008733345 5.249343e-03 5.141991e-02 2 113719281 113719308 28 - 1.275 1.050 -0.803
ENSG00000115084 E015 1.0904139 0.0151588834 9.607626e-01 9.912235e-01 2 113719309 113719711 403 - 0.305 0.313 0.053
ENSG00000115084 E016 0.0000000       2 113723103 113723103 1 -      
ENSG00000115084 E017 26.9451694 0.0005480277 7.018692e-01 8.786886e-01 2 113723104 113723194 91 - 1.431 1.410 -0.075
ENSG00000115084 E018 33.9339127 0.0004274065 5.571068e-01 7.992287e-01 2 113725378 113725537 160 - 1.531 1.501 -0.104
ENSG00000115084 E019 0.1186381 0.0118241302 1.000000e+00   2 113725538 113725862 325 - 0.068 0.000 -9.135
ENSG00000115084 E020 20.8425173 0.0006508675 1.688047e-01 4.401834e-01 2 113729401 113729505 105 - 1.347 1.253 -0.328
ENSG00000115084 E021 18.0333164 0.0007926071 3.450025e-02 1.773819e-01 2 113731584 113731648 65 - 1.305 1.148 -0.558
ENSG00000115084 E022 0.4974987 0.0286875263 8.859717e-02   2 113733365 113733403 39 - 0.068 0.313 2.638
ENSG00000115084 E023 17.9295272 0.0007903574 2.635240e-05 7.779367e-04 2 113734586 113734673 88 - 1.344 1.007 -1.201
ENSG00000115084 E024 16.4414229 0.0007998402 1.040380e-02 8.239624e-02 2 113735777 113735858 82 - 1.279 1.077 -0.721
ENSG00000115084 E025 0.1186381 0.0118241302 1.000000e+00   2 113741884 113741908 25 - 0.068 0.000 -9.135
ENSG00000115084 E026 4.4737746 0.0031895612 9.831532e-01 9.986903e-01 2 113741909 113742599 691 - 0.720 0.719 -0.006
ENSG00000115084 E027 2.1584245 0.0069951987 3.372801e-01 6.290799e-01 2 113742600 113742691 92 - 0.529 0.382 -0.754
ENSG00000115084 E028 29.0716171 0.0005395843 2.951642e-01 5.884321e-01 2 113742692 113742879 188 - 1.475 1.416 -0.206
ENSG00000115084 E029 16.1894458 0.0024103369 6.276522e-01 8.399860e-01 2 113743713 113743794 82 - 1.225 1.189 -0.129
ENSG00000115084 E030 0.0000000       2 113743795 113743898 104 -      
ENSG00000115084 E031 11.9339091 0.0054694283 2.740655e-01 5.676355e-01 2 113746277 113746339 63 - 1.122 1.022 -0.362
ENSG00000115084 E032 20.5411918 0.0006803039 8.187621e-01 9.339717e-01 2 113750425 113750568 144 - 1.316 1.302 -0.050
ENSG00000115084 E033 17.6035167 0.0010040488 3.222721e-01 6.153287e-01 2 113755165 113755306 142 - 1.271 1.199 -0.255
ENSG00000115084 E034 12.6268455 0.0010730398 1.271372e-01 3.780055e-01 2 113755454 113755544 91 - 1.154 1.022 -0.477
ENSG00000115084 E035 0.4989181 0.0195103774 8.738546e-02   2 113755855 113756369 515 - 0.068 0.313 2.638
ENSG00000115084 E036 15.8971691 0.0009145586 1.869598e-01 4.648610e-01 2 113756370 113756693 324 - 1.238 1.137 -0.362

Help

Please Click HERE to learn more details about the results from DEXseq.