ENSG00000115204

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000380044 ENSG00000115204 No_inf pgKDN_inf MPV17 protein_coding protein_coding 77.13882 76.96628 72.43769 1.69486 1.265249 -0.08747418 49.160881 38.4246175 49.888168 2.0193938 0.571924 0.3765805 0.63603333 0.498350 0.68900 0.190650 0.0004095436 0.0004095436 FALSE TRUE
ENST00000620797 ENSG00000115204 No_inf pgKDN_inf MPV17 protein_coding protein_coding_CDS_not_defined 77.13882 76.96628 72.43769 1.69486 1.265249 -0.08747418 3.240465 8.3285386 0.000000 2.9185886 0.000000 -9.7036508 0.04073333 0.106225 0.00000 -0.106225 0.0097489946 0.0004095436   FALSE
MSTRG.15991.2 ENSG00000115204 No_inf pgKDN_inf MPV17 protein_coding   77.13882 76.96628 72.43769 1.69486 1.265249 -0.08747418 3.817872 0.3348537 6.545705 0.3348537 2.009591 4.2486945 0.05055833 0.004250 0.09065 0.086400 0.0076787501 0.0004095436 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115204 E001 0.2542726 0.2365726485 3.130633e-01   2 27309492 27309492 1 - 0.000 0.170 10.779
ENSG00000115204 E002 1.1090092 0.1706224432 8.997370e-01 9.673473e-01 2 27309493 27309493 1 - 0.301 0.342 0.259
ENSG00000115204 E003 8.3089532 0.0111057199 3.834114e-01 6.695098e-01 2 27309494 27309529 36 - 1.011 0.926 -0.318
ENSG00000115204 E004 9.4083354 0.0169667920 3.686400e-01 6.571250e-01 2 27309530 27309539 10 - 1.061 0.972 -0.326
ENSG00000115204 E005 37.5631821 0.0004258904 3.275723e-01 6.201633e-01 2 27309540 27309645 106 - 1.608 1.565 -0.147
ENSG00000115204 E006 38.4873233 0.0003887868 1.201497e-01 3.664700e-01 2 27309646 27309706 61 - 1.631 1.562 -0.236
ENSG00000115204 E007 46.1981464 0.0003194983 1.171851e-01 3.614883e-01 2 27309707 27309794 88 - 1.706 1.642 -0.215
ENSG00000115204 E008 36.0477094 0.0004152669 7.911486e-02 2.884070e-01 2 27309795 27309849 55 - 1.519 1.608 0.304
ENSG00000115204 E009 34.8658462 0.0004229787 1.602770e-02 1.097978e-01 2 27309850 27309903 54 - 1.484 1.608 0.421
ENSG00000115204 E010 41.4041936 0.0003468493 2.560065e-01 5.480454e-01 2 27309904 27309981 78 - 1.597 1.652 0.187
ENSG00000115204 E011 1.9899717 0.3210470954 1.460857e-01 4.070566e-01 2 27311073 27311494 422 - 0.301 0.588 1.525
ENSG00000115204 E012 0.7428672 0.0265688350 4.552867e-01 7.278625e-01 2 27311495 27311677 183 - 0.176 0.292 0.938
ENSG00000115204 E013 1.7264356 0.2374600860 8.824320e-01 9.604482e-01 2 27311678 27311898 221 - 0.398 0.465 0.353
ENSG00000115204 E014 30.4944179 0.0005703572 7.311998e-01 8.932539e-01 2 27311899 27311929 31 - 1.505 1.491 -0.051
ENSG00000115204 E015 24.1570167 0.0005954374 8.879779e-01 9.625334e-01 2 27311930 27311934 5 - 1.394 1.405 0.040
ENSG00000115204 E016 28.9128978 0.0005124797 7.904151e-01 9.196684e-01 2 27311935 27311951 17 - 1.481 1.470 -0.038
ENSG00000115204 E017 3.1551876 0.0081193310 1.343497e-05 4.402198e-04 2 27311952 27312146 195 - 0.176 0.814 3.461
ENSG00000115204 E018 1.7766702 0.0193716869 5.137809e-05 1.361683e-03 2 27312147 27312213 67 - 0.000 0.639 13.602
ENSG00000115204 E019 34.3999664 0.0004420708 4.604430e-01 7.318833e-01 2 27312214 27312246 33 - 1.565 1.532 -0.114
ENSG00000115204 E020 2.2366620 0.0309623265 8.962717e-02 3.110851e-01 2 27312247 27312247 1 - 0.352 0.614 1.316
ENSG00000115204 E021 1.8489599 0.1810169195 6.922355e-01 8.740235e-01 2 27312248 27312299 52 - 0.398 0.499 0.523
ENSG00000115204 E022 2.3669747 0.0059127271 4.823963e-02 2.162005e-01 2 27312300 27312405 106 - 0.352 0.639 1.423
ENSG00000115204 E023 4.8386771 0.0559620832 1.025093e-01 3.347514e-01 2 27312406 27312493 88 - 0.629 0.859 0.937
ENSG00000115204 E024 50.3060596 0.0004376749 1.077964e-02 8.440610e-02 2 27312494 27312589 96 - 1.760 1.659 -0.343
ENSG00000115204 E025 0.0000000       2 27312590 27312679 90 -      
ENSG00000115204 E026 48.1949705 0.0003246377 8.217025e-03 7.037907e-02 2 27312680 27312772 93 - 1.744 1.637 -0.363
ENSG00000115204 E027 4.9885970 0.0028644537 2.301934e-03 2.835180e-02 2 27312773 27312993 221 - 0.544 0.913 1.523
ENSG00000115204 E028 34.2702125 0.0092414588 7.094136e-02 2.698032e-01 2 27312994 27313074 81 - 1.602 1.491 -0.382
ENSG00000115204 E029 15.3747736 0.0011665751 1.772435e-01 4.517782e-01 2 27313075 27313109 35 - 1.261 1.166 -0.338
ENSG00000115204 E030 2.7283581 0.0060327485 1.126953e-01 3.531405e-01 2 27313110 27313154 45 - 0.439 0.662 1.037
ENSG00000115204 E031 7.5972559 0.0019749455 3.634309e-04 6.801277e-03 2 27313155 27313387 233 - 0.699 1.071 1.430
ENSG00000115204 E032 8.1481896 0.0031579812 1.268063e-07 7.244886e-06 2 27315716 27316158 443 - 0.574 1.144 2.233
ENSG00000115204 E033 1.8757990 0.0073160900 2.242298e-02 1.361586e-01 2 27316159 27316186 28 - 0.243 0.588 1.938
ENSG00000115204 E034 4.2235093 0.0156280258 3.062645e-02 1.646594e-01 2 27316791 27317077 287 - 0.544 0.829 1.201
ENSG00000115204 E035 2.7433771 0.0157409420 4.829870e-02 2.163028e-01 2 27317078 27317173 96 - 0.398 0.684 1.353
ENSG00000115204 E036 1.8620430 0.0715310207 3.000927e-01 5.930166e-01 2 27317174 27317234 61 - 0.352 0.531 0.938
ENSG00000115204 E037 3.0920572 0.0084663470 2.093024e-01 4.935302e-01 2 27321959 27322447 489 - 0.512 0.684 0.768
ENSG00000115204 E038 16.6822341 0.0077789393 8.473525e-02 3.007641e-01 2 27322448 27322522 75 - 1.312 1.180 -0.465
ENSG00000115204 E039 0.4982242 0.5089653013 6.018423e-01   2 27322523 27322564 42 - 0.097 0.235 1.520
ENSG00000115204 E040 0.2362687 0.0156937180 2.253434e-01   2 27322990 27323051 62 - 0.176 0.000 -11.025
ENSG00000115204 E041 7.5468194 0.0019045491 1.437271e-01 4.037174e-01 2 27323052 27323102 51 - 1.000 0.859 -0.532
ENSG00000115204 E042 1.4414531 0.0087544735 6.605710e-02 2.588237e-01 2 27324433 27325680 1248 - 0.512 0.235 -1.647

Help

Please Click HERE to learn more details about the results from DEXseq.