ENSG00000115282

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000233623 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding protein_coding 12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 2.7435666 1.593872 3.1475164 0.9202428 1.6173783 0.9772315 0.22900833 0.101700 0.289550 0.187850 0.754711706 0.003143513 FALSE TRUE
ENST00000424122 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding nonsense_mediated_decay 12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 1.1626571 2.404257 1.0837142 1.6923014 0.5958563 -1.1423436 0.09185000 0.155150 0.120400 -0.034750 0.959732162 0.003143513 FALSE TRUE
ENST00000442235 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding protein_coding 12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 0.8746928 1.238999 1.3850798 0.7174228 0.8037448 0.1595759 0.07607500 0.078625 0.149600 0.070975 0.952882545 0.003143513 FALSE TRUE
ENST00000463704 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding retained_intron 12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 1.0844128 1.891014 0.0000000 0.4129767 0.0000000 -7.5706252 0.07820000 0.123025 0.000000 -0.123025 0.003143513 0.003143513   FALSE
ENST00000489152 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding retained_intron 12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 0.8301677 1.760830 0.2140357 0.2030464 0.1236502 -2.9826252 0.06245833 0.120475 0.019950 -0.100525 0.186411465 0.003143513 TRUE TRUE
MSTRG.16597.11 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding   12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 2.9029622 3.910096 1.2321835 1.6328735 0.7555099 -1.6580105 0.23717500 0.280525 0.127550 -0.152975 0.811114370 0.003143513 TRUE TRUE
MSTRG.16597.8 ENSG00000115282 No_inf pgKDN_inf TTC31 protein_coding   12.26045 15.01018 10.12252 1.043732 0.6292736 -0.5679083 0.8470812 0.000000 1.3910396 0.0000000 1.3910396 7.1303539 0.08050000 0.000000 0.133175 0.133175 0.829005148 0.003143513 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115282 E001 0.0000000       2 74483073 74483080 8 +      
ENSG00000115282 E002 0.0000000       2 74483081 74483081 1 +      
ENSG00000115282 E003 0.0000000       2 74483082 74483086 5 +      
ENSG00000115282 E004 0.0000000       2 74483087 74483088 2 +      
ENSG00000115282 E005 0.0000000       2 74483089 74483089 1 +      
ENSG00000115282 E006 0.0000000       2 74483090 74483100 11 +      
ENSG00000115282 E007 0.0000000       2 74483101 74483104 4 +      
ENSG00000115282 E008 0.0000000       2 74483105 74483135 31 +      
ENSG00000115282 E009 0.0000000       2 74483322 74483410 89 +      
ENSG00000115282 E010 0.6346136 0.0142935592 6.421836e-02 0.255198419 2 74483411 74483563 153 + 0.000 0.299 10.703
ENSG00000115282 E011 0.4993265 0.0157426910 5.805162e-01   2 74483564 74483705 142 + 0.115 0.203 0.978
ENSG00000115282 E012 0.4914576 0.0161369366 6.585872e-01   2 74490025 74490034 10 + 0.205 0.145 -0.607
ENSG00000115282 E013 5.7229762 0.0025446754 1.091701e-02 0.085172584 2 74490035 74490127 93 + 0.962 0.696 -1.039
ENSG00000115282 E014 1.3601980 0.0099076469 8.557971e-01 0.949254750 2 74490128 74490243 116 + 0.344 0.378 0.201
ENSG00000115282 E015 15.2507447 0.0015824537 2.989001e-01 0.591838704 2 74490244 74490473 230 + 1.238 1.173 -0.232
ENSG00000115282 E016 1.7600847 0.0084635882 4.311919e-02 0.202419012 2 74490474 74490655 182 + 0.205 0.529 1.978
ENSG00000115282 E017 6.7824633 0.0077331679 6.886877e-01 0.871783029 2 74490656 74490739 84 + 0.900 0.866 -0.130
ENSG00000115282 E018 2.6221287 0.0056387696 1.418794e-01 0.400763914 2 74490740 74491127 388 + 0.400 0.621 1.072
ENSG00000115282 E019 6.5023885 0.0336158414 2.104662e-01 0.494911188 2 74491128 74491184 57 + 0.947 0.803 -0.553
ENSG00000115282 E020 7.3865891 0.0019807307 4.943554e-01 0.755870142 2 74491295 74491375 81 + 0.947 0.889 -0.220
ENSG00000115282 E021 7.5130968 0.0020339097 5.647599e-01 0.803920922 2 74491481 74491569 89 + 0.947 0.900 -0.178
ENSG00000115282 E022 3.9366631 0.0535292766 5.988602e-01 0.824043114 2 74491570 74491583 14 + 0.718 0.660 -0.245
ENSG00000115282 E023 4.7819567 0.0031630432 2.223412e-01 0.509637500 2 74491584 74491628 45 + 0.829 0.696 -0.533
ENSG00000115282 E024 4.0816097 0.0038229363 7.507784e-01 0.901699291 2 74491629 74491666 38 + 0.665 0.713 0.201
ENSG00000115282 E025 1.2160377 0.0128410464 1.888296e-01 0.467369687 2 74491667 74491672 6 + 0.449 0.254 -1.192
ENSG00000115282 E026 0.3812526 0.0164635564 2.227432e-01   2 74491673 74491943 271 + 0.000 0.203 12.119
ENSG00000115282 E027 0.6267447 0.0151980071 3.757231e-01 0.663097235 2 74491944 74492003 60 + 0.115 0.254 1.393
ENSG00000115282 E028 3.5933619 0.0044449682 6.125329e-01 0.831512242 2 74492004 74492055 52 + 0.604 0.678 0.319
ENSG00000115282 E029 0.2533610 0.0160319792 4.389682e-01   2 74492056 74492138 83 + 0.000 0.145 11.596
ENSG00000115282 E030 6.6706822 0.0023770003 9.799420e-01 0.997709714 2 74492139 74492229 91 + 0.866 0.878 0.046
ENSG00000115282 E031 1.7263444 0.0099942746 7.731830e-01 0.912711030 2 74492230 74492233 4 + 0.449 0.413 -0.192
ENSG00000115282 E032 2.7489769 0.0055790140 1.061281e-01 0.341027827 2 74492234 74492303 70 + 0.400 0.641 1.159
ENSG00000115282 E033 8.3163806 0.0018172808 1.879279e-01 0.466148979 2 74492304 74492445 142 + 0.866 1.005 0.525
ENSG00000115282 E034 1.5171384 0.2214624580 6.021856e-02 0.246290136 2 74492446 74492645 200 + 0.115 0.503 2.853
ENSG00000115282 E035 3.9769100 0.0375747225 4.253870e-01 0.704480727 2 74492646 74492675 30 + 0.604 0.730 0.531
ENSG00000115282 E036 7.0449882 0.0022869002 7.352503e-01 0.895061146 2 74492676 74492747 72 + 0.866 0.911 0.171
ENSG00000115282 E037 2.4111922 0.0082609716 3.721908e-05 0.001036867 2 74492748 74492921 174 + 0.000 0.678 14.293
ENSG00000115282 E038 4.0868958 0.0038108756 5.012729e-01 0.761293060 2 74492922 74492924 3 + 0.636 0.729 0.394
ENSG00000115282 E039 7.2601131 0.0021279029 5.983384e-01 0.823885784 2 74492925 74492966 42 + 0.932 0.889 -0.163
ENSG00000115282 E040 96.1144223 0.0002026797 7.017530e-01 0.878661490 2 74492967 74494623 1657 + 1.973 1.975 0.006

Help

Please Click HERE to learn more details about the results from DEXseq.