ENSG00000115355

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000263630 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding protein_coding 49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 4.7333768 2.309619 4.307713 1.4322818 2.5906534 0.8963793 0.09095000 0.048275 0.075075 0.026800 1.000000000 0.006737673 FALSE TRUE
ENST00000426576 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding protein_coding 49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 3.8211398 1.936994 5.097238 0.2243013 0.1857979 1.3912945 0.07457500 0.046025 0.090225 0.044200 0.434393747 0.006737673 FALSE TRUE
ENST00000468534 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding protein_coding_CDS_not_defined 49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 1.9658623 4.700914 0.000000 1.7182002 0.0000000 -8.8798631 0.04308333 0.105775 0.000000 -0.105775 0.009651167 0.006737673 FALSE TRUE
ENST00000474059 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding retained_intron 49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 0.9976842 2.993053 0.000000 2.9930527 0.0000000 -8.2302860 0.01835000 0.055050 0.000000 -0.055050 0.833261016 0.006737673 FALSE FALSE
ENST00000643413 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding protein_coding 49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 11.5255886 5.952731 17.138211 1.2348370 0.5830864 1.5240130 0.22705000 0.148300 0.303600 0.155300 0.173655315 0.006737673 FALSE TRUE
ENST00000645969 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding retained_intron 49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 3.8303403 3.787778 3.393795 0.2497942 0.2178807 -0.1580110 0.07827500 0.091625 0.060200 -0.031425 0.775977328 0.006737673 FALSE FALSE
MSTRG.16309.28 ENSG00000115355 No_inf pgKDN_inf CCDC88A protein_coding   49.99821 42.52033 56.48562 3.960932 0.7074673 0.409647 4.2718825 2.145693 5.449039 0.1410327 1.6022430 1.3404953 0.08290833 0.051150 0.095650 0.044500 0.730238077 0.006737673 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115355 E001 0.6169223 0.2008101145 0.3307664204 0.623152520 2 55287842 55287847 6 - 0.136 0.296 1.414
ENSG00000115355 E002 0.6169223 0.2008101145 0.3307664204 0.623152520 2 55287848 55287848 1 - 0.136 0.296 1.414
ENSG00000115355 E003 2.1672895 0.0065746402 0.4493918577 0.723156004 2 55287849 55287871 23 - 0.530 0.420 -0.551
ENSG00000115355 E004 14.6308649 0.0074153775 0.5043170355 0.763482709 2 55287872 55288083 212 - 1.201 1.147 -0.190
ENSG00000115355 E005 6.7525473 0.0362916425 0.4527199132 0.725745922 2 55288084 55288087 4 - 0.912 0.816 -0.370
ENSG00000115355 E006 6.2815789 0.0306681133 0.6508530669 0.853016956 2 55288088 55288096 9 - 0.871 0.816 -0.214
ENSG00000115355 E007 9.0674971 0.0164427527 0.6579130213 0.856953677 2 55288097 55288112 16 - 1.008 0.962 -0.172
ENSG00000115355 E008 8.9679964 0.0080157211 0.9632542646 0.992248663 2 55288113 55288117 5 - 0.984 0.991 0.028
ENSG00000115355 E009 9.2137708 0.0041371801 0.9178485810 0.974144487 2 55288118 55288125 8 - 0.992 1.006 0.050
ENSG00000115355 E010 18.6187656 0.0044156401 0.1861110084 0.463995337 2 55288126 55288200 75 - 1.239 1.340 0.352
ENSG00000115355 E011 14.3976419 0.0388891833 0.1574137569 0.424067331 2 55288201 55288207 7 - 1.106 1.270 0.583
ENSG00000115355 E012 41.5461864 0.0051572342 0.0279546597 0.156174292 2 55288208 55288355 148 - 1.564 1.690 0.428
ENSG00000115355 E013 240.3961255 0.0018598473 0.0002134737 0.004409478 2 55288356 55289672 1317 - 2.330 2.427 0.325
ENSG00000115355 E014 74.5106332 0.0002283230 0.0708153797 0.269443153 2 55289673 55290180 508 - 1.838 1.906 0.231
ENSG00000115355 E015 35.6242077 0.0040860871 0.6828570768 0.868613528 2 55290181 55290409 229 - 1.557 1.539 -0.063
ENSG00000115355 E016 21.8039567 0.0017033989 0.0160377380 0.109818547 2 55290410 55290508 99 - 1.399 1.238 -0.562
ENSG00000115355 E017 28.5258339 0.0005119160 0.1918997014 0.471651695 2 55290509 55290654 146 - 1.483 1.411 -0.246
ENSG00000115355 E018 32.6535194 0.0004563255 0.0042495082 0.044288497 2 55290655 55290809 155 - 1.566 1.411 -0.532
ENSG00000115355 E019 16.7140548 0.0014389546 0.7189359446 0.886807486 2 55290810 55290838 29 - 1.244 1.221 -0.079
ENSG00000115355 E020 21.1603122 0.0007615060 0.3084623262 0.601685609 2 55290839 55290899 61 - 1.356 1.292 -0.222
ENSG00000115355 E021 47.7212656 0.0002970014 0.4386148596 0.714717765 2 55290900 55291164 265 - 1.659 1.698 0.132
ENSG00000115355 E022 11.0018704 0.0480802187 0.8532313378 0.948218790 2 55291165 55291675 511 - 1.080 1.046 -0.124
ENSG00000115355 E023 17.5533997 0.0008373957 0.7823971181 0.916274735 2 55291676 55291699 24 - 1.262 1.246 -0.054
ENSG00000115355 E024 23.7357881 0.0011946138 0.5467382449 0.792405356 2 55291700 55291775 76 - 1.393 1.359 -0.117
ENSG00000115355 E025 2.3034627 0.0847497181 0.9933233848 1.000000000 2 55291776 55292914 1139 - 0.506 0.516 0.050
ENSG00000115355 E026 36.7038271 0.0003678914 0.0373996449 0.186282909 2 55293553 55295596 2044 - 1.599 1.496 -0.354
ENSG00000115355 E027 13.9988353 0.0041324469 0.3341636114 0.626051835 2 55295597 55295606 10 - 1.130 1.213 0.295
ENSG00000115355 E028 38.4072522 0.0003616444 0.2307268347 0.519183526 2 55295607 55295727 121 - 1.557 1.621 0.216
ENSG00000115355 E029 27.2844050 0.0005043912 0.0443784907 0.205931241 2 55295728 55295796 69 - 1.389 1.509 0.413
ENSG00000115355 E030 47.7931693 0.0034868909 0.2150943504 0.500772628 2 55295797 55295949 153 - 1.696 1.637 -0.200
ENSG00000115355 E031 33.1091469 0.0004407636 0.0902880501 0.312040214 2 55295950 55296056 107 - 1.551 1.463 -0.300
ENSG00000115355 E032 53.0646389 0.0002697411 0.6973816362 0.876505910 2 55296258 55296520 263 - 1.724 1.712 -0.041
ENSG00000115355 E033 9.7751855 0.0013889459 0.3097970349 0.603067685 2 55296521 55296523 3 - 1.053 0.962 -0.336
ENSG00000115355 E034 10.0781302 0.0013696180 0.0007140229 0.011523074 2 55296524 55297165 642 - 0.892 1.195 1.110
ENSG00000115355 E035 0.7446926 0.0138814370 0.1352558186 0.390904906 2 55299828 55299838 11 - 0.136 0.363 1.828
ENSG00000115355 E036 21.6944085 0.0006209776 0.0372352416 0.185781224 2 55299839 55299919 81 - 1.389 1.254 -0.472
ENSG00000115355 E037 1.1227993 0.0146333428 0.0123165709 0.091923895 2 55299920 55300252 333 - 0.136 0.516 2.635
ENSG00000115355 E038 0.6260508 0.0149865912 0.0484174298 0.216601332 2 55300253 55300339 87 - 0.073 0.363 2.828
ENSG00000115355 E039 1.4753141 0.0367897057 0.1433239229 0.403151792 2 55300340 55300956 617 - 0.283 0.516 1.313
ENSG00000115355 E040 0.2340080 0.2481062352 0.5652362334   2 55300957 55300996 40 - 0.136 0.000 -13.235
ENSG00000115355 E041 0.7171887 0.0142621421 0.3011763286 0.594208535 2 55300997 55301205 209 - 0.283 0.123 -1.494
ENSG00000115355 E042 19.9345844 0.0006496146 0.2014751531 0.483890194 2 55301206 55301277 72 - 1.338 1.254 -0.292
ENSG00000115355 E043 0.9790100 0.0122456404 0.4335542794 0.710976816 2 55301278 55301667 390 - 0.239 0.363 0.828
ENSG00000115355 E044 0.7191671 0.0143865599 0.3014049308 0.594476999 2 55301668 55301871 204 - 0.283 0.123 -1.494
ENSG00000115355 E045 37.0317620 0.0003929732 0.0144988942 0.102689870 2 55301872 55302072 201 - 1.609 1.487 -0.419
ENSG00000115355 E046 0.3719991 0.0165394391 0.2939870578   2 55302663 55302729 67 - 0.073 0.218 1.828
ENSG00000115355 E047 0.8636130 0.0164867820 0.2693767485 0.562982710 2 55302730 55303068 339 - 0.191 0.363 1.243
ENSG00000115355 E048 5.5919855 0.0035465929 0.6943879479 0.875226768 2 55303069 55303152 84 - 0.788 0.837 0.190
ENSG00000115355 E049 0.4916789 0.4502704199 0.6520170869   2 55307977 55308101 125 - 0.136 0.218 0.827
ENSG00000115355 E050 1.3439619 0.1662931570 0.5779187393 0.811366860 2 55308102 55308808 707 - 0.323 0.420 0.565
ENSG00000115355 E051 15.8180780 0.0008473724 0.2346914750 0.523765880 2 55308809 55309023 215 - 1.244 1.157 -0.306
ENSG00000115355 E052 14.5956196 0.0009200575 0.1330237735 0.387308583 2 55309162 55309181 20 - 1.221 1.105 -0.412
ENSG00000115355 E053 27.8596339 0.0005661735 0.6385993096 0.846162912 2 55309182 55309254 73 - 1.456 1.433 -0.079
ENSG00000115355 E054 39.1097864 0.0056417164 0.6233383561 0.837797321 2 55312434 55312579 146 - 1.599 1.574 -0.086
ENSG00000115355 E055 0.9893297 0.0521144421 0.1530063605 0.417285854 2 55312580 55313828 1249 - 0.191 0.420 1.565
ENSG00000115355 E056 0.1187032 0.0118162390 1.0000000000   2 55313829 55314123 295 - 0.073 0.000 -13.172
ENSG00000115355 E057 0.0000000       2 55314124 55314130 7 -      
ENSG00000115355 E058 29.6241992 0.0005355649 0.2952144925 0.588471199 2 55315928 55316102 175 - 1.493 1.438 -0.190
ENSG00000115355 E059 3.6288270 0.0040033387 0.7389428812 0.896479757 2 55316103 55316114 12 - 0.670 0.630 -0.172
ENSG00000115355 E060 18.0059246 0.0007933212 0.0007174297 0.011560803 2 55317206 55317349 144 - 1.345 1.094 -0.888
ENSG00000115355 E061 0.0000000       2 55317350 55317380 31 -      
ENSG00000115355 E062 30.7929734 0.0020091044 0.0006266492 0.010380128 2 55317564 55317841 278 - 1.555 1.353 -0.698
ENSG00000115355 E063 31.4961562 0.0007205680 0.6708074113 0.863262394 2 55318843 55319004 162 - 1.506 1.487 -0.065
ENSG00000115355 E064 42.0871840 0.0003635614 0.9902199116 1.000000000 2 55322528 55322692 165 - 1.619 1.624 0.017
ENSG00000115355 E065 0.9551526 0.0392200637 0.1444808344 0.404696407 2 55322693 55324334 1642 - 0.359 0.123 -1.980
ENSG00000115355 E066 39.7665613 0.0024379132 0.8354553551 0.940835803 2 55328294 55328432 139 - 1.600 1.593 -0.023
ENSG00000115355 E067 9.1045705 0.0201602271 0.6835316856 0.868996459 2 55328433 55328435 3 - 0.975 1.019 0.163
ENSG00000115355 E068 2.4831249 0.0063268006 0.0025695466 0.030729661 2 55328436 55330168 1733 - 0.323 0.745 2.050
ENSG00000115355 E069 0.0000000       2 55331822 55332130 309 -      
ENSG00000115355 E070 0.0000000       2 55332131 55332298 168 -      
ENSG00000115355 E071 0.2543986 0.0159864823 0.1019819521   2 55332299 55332427 129 - 0.000 0.218 14.300
ENSG00000115355 E072 0.1271363 0.0123118854 0.2966751431   2 55332428 55332432 5 - 0.000 0.123 13.362
ENSG00000115355 E073 0.8694046 0.0265018300 0.0648325465 0.256580457 2 55332433 55332565 133 - 0.136 0.420 2.150
ENSG00000115355 E074 36.8009097 0.0003760002 0.3393331442 0.630980652 2 55332566 55332693 128 - 1.544 1.596 0.179
ENSG00000115355 E075 59.7188826 0.0002482593 0.0417529712 0.198772685 2 55334094 55334335 242 - 1.736 1.821 0.287
ENSG00000115355 E076 118.2339250 0.0001461914 0.0055460773 0.053386067 2 55334336 55334843 508 - 2.030 2.112 0.275
ENSG00000115355 E077 40.8547934 0.0003913830 0.8449909244 0.944788037 2 55334844 55334989 146 - 1.603 1.617 0.047
ENSG00000115355 E078 22.7942346 0.0021533721 0.9090310430 0.971139080 2 55334990 55335008 19 - 1.359 1.371 0.042
ENSG00000115355 E079 19.8217736 0.0020420398 0.2824010716 0.576081523 2 55335009 55335013 5 - 1.275 1.353 0.272
ENSG00000115355 E080 19.0691282 0.0122014230 0.5648531541 0.803990025 2 55335014 55335015 2 - 1.270 1.320 0.174
ENSG00000115355 E081 19.5677281 0.0091289024 0.4239411241 0.703178731 2 55335016 55335017 2 - 1.275 1.340 0.228
ENSG00000115355 E082 24.2011769 0.0057787598 0.2516505017 0.542835586 2 55335018 55335048 31 - 1.356 1.438 0.285
ENSG00000115355 E083 23.7384519 0.0057192078 0.1383160776 0.395696510 2 55335049 55335078 30 - 1.338 1.443 0.365
ENSG00000115355 E084 20.6551118 0.0078644470 0.5364561754 0.785759257 2 55335079 55335092 14 - 1.303 1.353 0.172
ENSG00000115355 E085 27.4579071 0.0023377774 0.4307138114 0.708537751 2 55335093 55335164 72 - 1.421 1.473 0.179
ENSG00000115355 E086 17.9643504 0.0008006327 0.6969399820 0.876256172 2 55336681 55336715 35 - 1.253 1.285 0.112
ENSG00000115355 E087 15.9993314 0.0008348164 0.9841812989 0.998727939 2 55336716 55336818 103 - 1.216 1.221 0.021
ENSG00000115355 E088 0.1271363 0.0123118854 0.2966751431   2 55336819 55337681 863 - 0.000 0.123 13.362
ENSG00000115355 E089 0.0000000       2 55339464 55339648 185 -      
ENSG00000115355 E090 23.6941462 0.0048527127 0.2672267380 0.560422609 2 55343648 55343778 131 - 1.405 1.333 -0.250
ENSG00000115355 E091 15.2527237 0.0127169721 0.6620869772 0.859050208 2 55343779 55343792 14 - 1.211 1.177 -0.121
ENSG00000115355 E092 0.1271363 0.0123118854 0.2966751431   2 55343990 55344367 378 - 0.000 0.123 13.362
ENSG00000115355 E093 26.0985125 0.0005643021 0.6738393826 0.864941509 2 55344368 55344463 96 - 1.409 1.438 0.102
ENSG00000115355 E094 18.6009920 0.0010984670 0.3653210190 0.653875281 2 55344464 55344514 51 - 1.253 1.320 0.235
ENSG00000115355 E095 33.7594079 0.0004063164 0.4388384363 0.714860707 2 55346175 55346333 159 - 1.542 1.505 -0.126
ENSG00000115355 E096 1.2223651 0.0107483603 0.3822483988 0.668510170 2 55348441 55349517 1077 - 0.283 0.420 0.828
ENSG00000115355 E097 21.0148433 0.0122985550 0.2893506725 0.582944126 2 55349518 55349599 82 - 1.359 1.277 -0.285
ENSG00000115355 E098 0.4896297 0.0157697314 0.5776859528   2 55349600 55350610 1011 - 0.136 0.218 0.828
ENSG00000115355 E099 0.4975013 0.0156743095 0.1205092650   2 55355323 55355578 256 - 0.073 0.296 2.413
ENSG00000115355 E100 24.4861308 0.0005665629 0.0444564669 0.206159482 2 55355579 55355711 133 - 1.436 1.313 -0.425
ENSG00000115355 E101 14.9238620 0.0009952475 0.0232224479 0.139148928 2 55355712 55355751 40 - 1.248 1.070 -0.636
ENSG00000115355 E102 0.6344876 0.0152069478 0.0035137711 0.038852000 2 55355752 55356802 1051 - 0.000 0.420 15.554
ENSG00000115355 E103 1.0878320 0.0948910239 0.8830693015 0.960605822 2 55357797 55357872 76 - 0.323 0.296 -0.172
ENSG00000115355 E104 0.0000000       2 55361913 55362307 395 -      
ENSG00000115355 E105 24.7250737 0.0225114467 0.9983691569 1.000000000 2 55362308 55362448 141 - 1.396 1.400 0.015
ENSG00000115355 E106 0.1265070 0.0122624886 0.2967398420   2 55363612 55363733 122 - 0.000 0.123 13.362
ENSG00000115355 E107 18.6936066 0.0102554893 0.0956910971 0.322140317 2 55363950 55364033 84 - 1.327 1.195 -0.462
ENSG00000115355 E108 0.1265070 0.0122624886 0.2967398420   2 55364034 55364238 205 - 0.000 0.123 13.362
ENSG00000115355 E109 13.9591115 0.0066368192 0.0413483558 0.197454400 2 55372452 55372510 59 - 1.220 1.046 -0.627
ENSG00000115355 E110 14.9514397 0.0009292662 0.0907533162 0.312873016 2 55374814 55374883 70 - 1.235 1.105 -0.462
ENSG00000115355 E111 0.1272623 0.0123175409 0.2966774440   2 55388536 55388777 242 - 0.000 0.123 13.362
ENSG00000115355 E112 18.0204472 0.0007526571 0.0013583504 0.018957358 2 55388778 55388886 109 - 1.341 1.105 -0.835
ENSG00000115355 E113 0.3617683 0.1974707085 1.0000000000   2 55394157 55394645 489 - 0.136 0.123 -0.172
ENSG00000115355 E114 0.0000000       2 55397254 55397371 118 -      
ENSG00000115355 E115 0.0000000       2 55399699 55399777 79 -      
ENSG00000115355 E116 1.8555619 0.0081690018 0.0186928888 0.121350778 2 55403387 55406158 2772 - 0.283 0.630 1.828
ENSG00000115355 E117 0.0000000       2 55416923 55418291 1369 -      
ENSG00000115355 E118 0.2441403 0.0161619726 0.6612764763   2 55418292 55418815 524 - 0.073 0.123 0.828
ENSG00000115355 E119 15.6846277 0.0008476184 0.1341448546 0.389248861 2 55418816 55418916 101 - 1.248 1.137 -0.394
ENSG00000115355 E120 0.0000000       2 55418917 55418951 35 -      
ENSG00000115355 E121 31.0030229 0.0004655886 0.0335818448 0.174321773 2 55419017 55419473 457 - 1.532 1.417 -0.397
ENSG00000115355 E122 9.7350598 0.0014652519 0.0269672170 0.152621933 2 55419474 55419744 271 - 1.087 0.876 -0.781
ENSG00000115355 E123 1.8097957 0.0499922900 0.4653214679 0.734398747 2 55419745 55419895 151 - 0.480 0.363 -0.632

Help

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