ENSG00000115419

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000320717 ENSG00000115419 No_inf pgKDN_inf GLS protein_coding protein_coding 92.97145 108.4756 94.94199 7.138001 1.171738 -0.1922339 21.447516 17.898061 24.716369 1.867126 0.7606306 0.4654412 0.24000000 0.170025 0.260425 0.090400 0.347218499 0.009529988 FALSE  
ENST00000338435 ENSG00000115419 No_inf pgKDN_inf GLS protein_coding protein_coding 92.97145 108.4756 94.94199 7.138001 1.171738 -0.1922339 4.830124 0.000000 6.529231 0.000000 2.4612577 9.3529773 0.05931667 0.000000 0.069300 0.069300 0.009529988 0.009529988 FALSE  
ENST00000409215 ENSG00000115419 No_inf pgKDN_inf GLS protein_coding protein_coding 92.97145 108.4756 94.94199 7.138001 1.171738 -0.1922339 18.866607 23.827839 19.883905 3.190341 6.6679094 -0.2609270 0.19665000 0.220575 0.208400 -0.012175 0.912595456 0.009529988 FALSE  
ENST00000409626 ENSG00000115419 No_inf pgKDN_inf GLS protein_coding protein_coding 92.97145 108.4756 94.94199 7.138001 1.171738 -0.1922339 4.997237 7.580200 4.066737 1.261653 0.6811862 -0.8967232 0.05303333 0.072625 0.042725 -0.029900 0.704307859 0.009529988 FALSE  
ENST00000471443 ENSG00000115419 No_inf pgKDN_inf GLS protein_coding protein_coding 92.97145 108.4756 94.94199 7.138001 1.171738 -0.1922339 6.265171 5.958401 6.420720 3.465104 4.9886360 0.1076358 0.07338333 0.057400 0.068975 0.011575 1.000000000 0.009529988    
ENST00000495444 ENSG00000115419 No_inf pgKDN_inf GLS protein_coding retained_intron 92.97145 108.4756 94.94199 7.138001 1.171738 -0.1922339 8.322206 11.205171 9.013292 2.011923 3.9811232 -0.3137259 0.08665833 0.105225 0.094650 -0.010575 0.851664790 0.009529988    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115419 E001 0.0000000       2 190880821 190880829 9 +      
ENSG00000115419 E002 0.0000000       2 190880830 190880833 4 +      
ENSG00000115419 E003 0.0000000       2 190880834 190880871 38 +      
ENSG00000115419 E004 0.0000000       2 190880872 190881154 283 +      
ENSG00000115419 E005 0.0000000       2 190881155 190881470 316 +      
ENSG00000115419 E006 16.4725290 0.0140567352 2.404139e-04 4.865472e-03 2 190895152 190895248 97 + 1.384 1.072 -1.102
ENSG00000115419 E007 0.7522141 0.1397551037 1.715396e-01 4.440943e-01 2 190895249 190895603 355 + 0.101 0.332 2.141
ENSG00000115419 E008 19.0074174 0.0066613178 8.987958e-06 3.115402e-04 2 190895604 190895651 48 + 1.449 1.120 -1.153
ENSG00000115419 E009 25.1520104 0.0013274553 1.063895e-04 2.496959e-03 2 190895652 190895725 74 + 1.526 1.298 -0.789
ENSG00000115419 E010 11.2152222 0.0029647542 2.680076e-01 5.614690e-01 2 190895726 190896568 843 + 1.027 1.128 0.365
ENSG00000115419 E011 8.9404208 0.0089416391 9.636124e-03 7.844750e-02 2 190898237 190898947 711 + 0.828 1.097 1.004
ENSG00000115419 E012 35.7590320 0.0016955988 3.734955e-05 1.039427e-03 2 190900564 190900663 100 + 1.666 1.456 -0.716
ENSG00000115419 E013 19.5879129 0.0028234252 2.648280e-03 3.141627e-02 2 190900664 190900693 30 + 1.411 1.209 -0.706
ENSG00000115419 E014 29.4137480 0.0016598757 3.796248e-05 1.055396e-03 2 190901947 190902026 80 + 1.592 1.363 -0.785
ENSG00000115419 E015 56.1747141 0.0004319737 8.263901e-06 2.898353e-04 2 190905004 190905167 164 + 1.842 1.668 -0.590
ENSG00000115419 E016 0.4892828 0.1010927418 8.888254e-01   2 190905168 190905276 109 + 0.182 0.164 -0.181
ENSG00000115419 E017 33.3408850 0.0012776605 9.332179e-05 2.244968e-03 2 190910263 190910321 59 + 1.633 1.431 -0.691
ENSG00000115419 E018 4.9473947 0.0040018633 2.536524e-01 5.452008e-01 2 190913193 190913364 172 + 0.691 0.829 0.557
ENSG00000115419 E019 72.3001866 0.0014334736 1.228780e-41 1.250435e-38 2 190917092 190920044 2953 + 1.449 2.040 2.005
ENSG00000115419 E020 10.1126924 0.0081481673 5.696823e-05 1.484311e-03 2 190920045 190920214 170 + 0.775 1.183 1.526
ENSG00000115419 E021 3.9454994 0.0508819621 5.794558e-01 8.121718e-01 2 190920215 190920248 34 + 0.642 0.730 0.367
ENSG00000115419 E022 20.0884978 0.0007378183 4.781037e-01 7.442262e-01 2 190921024 190921026 3 + 1.344 1.303 -0.145
ENSG00000115419 E023 26.4014782 0.0093347521 8.012867e-01 9.258872e-01 2 190921027 190921056 30 + 1.424 1.446 0.076
ENSG00000115419 E024 41.4558889 0.0012393934 7.137547e-01 8.846930e-01 2 190921145 190921203 59 + 1.633 1.620 -0.044
ENSG00000115419 E025 46.3098835 0.0033209019 2.760929e-01 5.695247e-01 2 190923917 190923983 67 + 1.699 1.650 -0.165
ENSG00000115419 E026 38.4594649 0.0005003777 2.775560e-01 5.707699e-01 2 190924543 190924593 51 + 1.620 1.572 -0.162
ENSG00000115419 E027 3.3292617 0.0331064513 5.737898e-01 8.090198e-01 2 190924594 190924780 187 + 0.587 0.670 0.360
ENSG00000115419 E028 0.7615936 0.0217736638 1.522837e-02 1.062656e-01 2 190927004 190927015 12 + 0.000 0.377 13.080
ENSG00000115419 E029 5.4668641 0.0025687770 2.243641e-02 1.361942e-01 2 190927016 190927305 290 + 0.642 0.910 1.073
ENSG00000115419 E030 81.1323152 0.0001929285 9.989346e-01 1.000000e+00 2 190927306 190927482 177 + 1.910 1.915 0.016
ENSG00000115419 E031 0.1271363 0.0123689062 6.155994e-01   2 190927483 190927611 129 + 0.000 0.090 10.659
ENSG00000115419 E032 0.0000000       2 190927672 190927692 21 +      
ENSG00000115419 E033 0.1271363 0.0123689062 6.155994e-01   2 190927693 190927730 38 + 0.000 0.090 10.659
ENSG00000115419 E034 26.1326270 0.0005110911 8.118919e-01 9.307807e-01 2 190930437 190930448 12 + 1.436 1.427 -0.031
ENSG00000115419 E035 60.4032254 0.0002371631 2.302233e-01 5.187746e-01 2 190930449 190930568 120 + 1.808 1.767 -0.139
ENSG00000115419 E036 27.6743691 0.0012228026 2.600443e-01 5.526967e-01 2 190931545 190931562 18 + 1.487 1.427 -0.206
ENSG00000115419 E037 48.0038120 0.0105423887 3.399833e-01 6.316669e-01 2 190931563 190931637 75 + 1.717 1.663 -0.181
ENSG00000115419 E038 3.5192514 0.0053964659 1.004934e-01 3.310132e-01 2 190932657 190932715 59 + 0.755 0.548 -0.891
ENSG00000115419 E039 669.7800985 0.0003884292 1.996472e-01 4.813704e-01 2 190932716 190935367 2652 + 2.814 2.833 0.063
ENSG00000115419 E040 15.1658367 0.0039352019 2.882511e-01 5.818531e-01 2 190953565 190953626 62 + 1.247 1.170 -0.274
ENSG00000115419 E041 17.5214242 0.0105575371 5.358073e-01 7.853253e-01 2 190954584 190954660 77 + 1.290 1.244 -0.160
ENSG00000115419 E042 19.6872104 0.0006914667 4.726749e-01 7.398998e-01 2 190954755 190954818 64 + 1.284 1.336 0.182
ENSG00000115419 E043 354.5547376 0.0013505967 3.613138e-02 1.824977e-01 2 190962830 190965552 2723 + 2.523 2.569 0.152

Help

Please Click HERE to learn more details about the results from DEXseq.