ENSG00000115464

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000398571 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding protein_coding 34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 4.492620 3.354404 5.2858622 0.1003941 0.1128661 0.6545148 0.13293333 0.094775 0.157575 0.062800 0.54797950 0.04019086 FALSE  
ENST00000411912 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding protein_coding 34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 4.509383 4.375397 4.8532587 0.7991648 0.8442170 0.1492158 0.13595833 0.125750 0.145250 0.019500 0.90174601 0.04019086 FALSE  
ENST00000436269 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding protein_coding 34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 9.377486 9.029659 10.7965848 1.1047744 1.1573124 0.2575705 0.27043333 0.250200 0.318175 0.067975 0.80365708 0.04019086 FALSE  
ENST00000476716 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding protein_coding_CDS_not_defined 34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 2.436804 5.103951 0.0000000 3.4220964 0.0000000 -8.9982945 0.05764167 0.115800 0.000000 -0.115800 0.46604101 0.04019086 FALSE  
ENST00000487547 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding retained_intron 34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 1.074528 2.517461 0.1505331 0.6434951 0.1505331 -3.9767456 0.02850000 0.065200 0.004300 -0.060900 0.04019086 0.04019086    
ENST00000498268 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding retained_intron 34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 1.789745 2.023575 1.2620344 0.1824084 0.2484194 -0.6768802 0.05259167 0.055775 0.037425 -0.018350 0.81591286 0.04019086    
MSTRG.16346.25 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding   34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 1.685348 0.000000 2.0267212 0.0000000 2.0267212 7.6701047 0.04657500 0.000000 0.051350 0.051350 0.83637610 0.04019086    
MSTRG.16346.4 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding   34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 3.151638 3.175206 3.5430990 0.3884077 0.4341617 0.1576910 0.09348333 0.087025 0.106550 0.019525 0.88560838 0.04019086 FALSE  
MSTRG.16346.9 ENSG00000115464 No_inf pgKDN_inf USP34 protein_coding   34.92144 37.19158 34.08967 4.260866 2.156556 -0.1256062 2.722469 2.279863 3.0749546 0.2262934 1.1350029 0.4299877 0.07672500 0.062800 0.087875 0.025075 0.99784429 0.04019086 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115464 E001 0.0000000       2 61187463 61187485 23 -      
ENSG00000115464 E002 0.0000000       2 61187486 61187549 64 -      
ENSG00000115464 E003 0.0000000       2 61187550 61188473 924 -      
ENSG00000115464 E004 0.0000000       2 61188474 61188709 236 -      
ENSG00000115464 E005 0.0000000       2 61188710 61188741 32 -      
ENSG00000115464 E006 0.0000000       2 61188910 61189069 160 -      
ENSG00000115464 E007 0.0000000       2 61189277 61189453 177 -      
ENSG00000115464 E008 0.0000000       2 61189454 61189697 244 -      
ENSG00000115464 E009 0.0000000       2 61189698 61190270 573 -      
ENSG00000115464 E010 0.0000000       2 61190271 61190414 144 -      
ENSG00000115464 E011 0.0000000       2 61190518 61190626 109 -      
ENSG00000115464 E012 0.0000000       2 61190627 61190658 32 -      
ENSG00000115464 E013 0.6249819 0.0149117961 1.411563e-01 3.997336e-01 2 61190659 61191349 691 - 0.091 0.308 2.155
ENSG00000115464 E014 10.4304306 0.0057828809 3.369830e-01 6.288872e-01 2 61192901 61192980 80 - 1.012 1.101 0.325
ENSG00000115464 E015 2.2315886 0.0060122158 1.044627e-01 3.377889e-01 2 61192981 61193365 385 - 0.379 0.613 1.155
ENSG00000115464 E016 16.8333972 0.0008487841 8.873650e-02 3.090877e-01 2 61203140 61203206 67 - 1.187 1.309 0.430
ENSG00000115464 E017 14.3233291 0.0009885400 6.478999e-01 8.513037e-01 2 61203207 61203263 57 - 1.167 1.204 0.130
ENSG00000115464 E018 21.0361735 0.0049313793 8.394387e-01 9.424127e-01 2 61204256 61204380 125 - 1.335 1.351 0.054
ENSG00000115464 E019 12.6357605 0.0019545371 3.185713e-01 6.112617e-01 2 61204497 61204526 30 - 1.092 1.175 0.295
ENSG00000115464 E020 19.6811998 0.0048440504 2.747201e-02 1.544085e-01 2 61204527 61204601 75 - 1.231 1.389 0.554
ENSG00000115464 E021 23.8359316 0.0220299945 1.959214e-01 4.763908e-01 2 61206017 61206124 108 - 1.331 1.453 0.423
ENSG00000115464 E022 13.9721935 0.0015455448 4.696306e-01 7.376607e-01 2 61206760 61206787 28 - 1.146 1.204 0.206
ENSG00000115464 E023 19.4859706 0.0007115041 3.787556e-01 6.656177e-01 2 61206788 61206886 99 - 1.281 1.341 0.209
ENSG00000115464 E024 3.1037972 0.0104396739 4.371003e-02 2.041972e-01 2 61206887 61208898 2012 - 0.456 0.732 1.242
ENSG00000115464 E025 13.7344303 0.0209016255 4.983498e-01 7.588154e-01 2 61208899 61208977 79 - 1.131 1.204 0.258
ENSG00000115464 E026 22.0856737 0.0006129029 1.529741e-01 4.172700e-01 2 61211772 61211929 158 - 1.316 1.407 0.315
ENSG00000115464 E027 20.1479541 0.0007306109 5.773133e-02 2.404016e-01 2 61214060 61214218 159 - 1.259 1.385 0.437
ENSG00000115464 E028 11.7882946 0.0050858646 2.123903e-01 4.976031e-01 2 61214219 61214278 60 - 1.049 1.159 0.396
ENSG00000115464 E029 32.8125618 0.0050833141 5.286268e-01 7.802047e-01 2 61214279 61214599 321 - 1.509 1.548 0.133
ENSG00000115464 E030 9.2787599 0.0263111692 7.189225e-01 8.868075e-01 2 61214600 61214626 27 - 1.031 0.990 -0.150
ENSG00000115464 E031 6.4820231 0.0025613579 9.680996e-01 9.936142e-01 2 61214627 61214627 1 - 0.875 0.873 -0.009
ENSG00000115464 E032 12.9423139 0.0011821694 6.568195e-01 8.563945e-01 2 61214628 61214694 67 - 1.160 1.127 -0.118
ENSG00000115464 E033 0.1265070 0.0122188243 4.853866e-01   2 61220193 61220309 117 - 0.000 0.100 10.944
ENSG00000115464 E034 10.5819187 0.0014351762 1.798455e-01 4.551113e-01 2 61220310 61220404 95 - 1.116 1.002 -0.416
ENSG00000115464 E035 6.7292139 0.0038341368 8.113924e-01 9.305245e-01 2 61220405 61220457 53 - 0.875 0.902 0.102
ENSG00000115464 E036 7.7157568 0.0017655500 5.987261e-01 8.240431e-01 2 61221502 61221558 57 - 0.913 0.967 0.201
ENSG00000115464 E037 5.7650719 0.0549260707 5.658036e-01 8.044352e-01 2 61221559 61221606 48 - 0.786 0.872 0.339
ENSG00000115464 E038 0.4806001 0.0157281267 3.713287e-01   2 61221607 61221845 239 - 0.229 0.100 -1.430
ENSG00000115464 E039 4.4673969 0.0069617594 9.428884e-03 7.739118e-02 2 61222619 61222631 13 - 0.550 0.873 1.339
ENSG00000115464 E040 6.3131656 0.0022349269 1.421340e-02 1.013064e-01 2 61222632 61222663 32 - 0.714 0.979 1.029
ENSG00000115464 E041 0.7536601 0.0133934043 7.190101e-02 2.719866e-01 2 61222664 61222975 312 - 0.091 0.360 2.477
ENSG00000115464 E042 10.5311949 0.0029320834 6.448192e-01 8.495830e-01 2 61223060 61223164 105 - 1.040 1.083 0.155
ENSG00000115464 E043 0.1265070 0.0122188243 4.853866e-01   2 61223165 61223247 83 - 0.000 0.100 10.944
ENSG00000115464 E044 7.7025710 0.0021958930 9.803799e-01 9.978172e-01 2 61223248 61223296 49 - 0.937 0.942 0.017
ENSG00000115464 E045 2.7831614 0.0077504620 1.168359e-06 5.344721e-05 2 61223297 61223661 365 - 0.091 0.808 4.547
ENSG00000115464 E046 1.2437634 0.0653942633 1.816365e-01 4.576679e-01 2 61226788 61226873 86 - 0.229 0.448 1.377
ENSG00000115464 E047 2.5757017 0.0054372144 6.544914e-01 8.550239e-01 2 61226874 61227066 193 - 0.521 0.584 0.292
ENSG00000115464 E048 16.2687912 0.0183406592 9.458742e-01 9.854120e-01 2 61227067 61227218 152 - 1.231 1.244 0.046
ENSG00000115464 E049 13.5400644 0.0041291007 5.008638e-01 7.609033e-01 2 61228645 61228719 75 - 1.187 1.135 -0.185
ENSG00000115464 E050 19.5930598 0.0019352306 1.090858e-01 3.467165e-01 2 61228827 61228990 164 - 1.362 1.256 -0.371
ENSG00000115464 E051 6.5775974 0.0250689243 5.305365e-01 7.815834e-01 2 61228991 61228995 5 - 0.913 0.841 -0.276
ENSG00000115464 E052 11.5210942 0.0014690641 4.861937e-01 7.499820e-01 2 61229548 61229633 86 - 1.067 1.127 0.216
ENSG00000115464 E053 10.6043967 0.0099876793 4.327477e-02 2.028473e-01 2 61232452 61232532 81 - 0.960 1.151 0.698
ENSG00000115464 E054 9.5298936 0.0165970405 8.337587e-01 9.401262e-01 2 61235845 61235910 66 - 1.031 1.013 -0.067
ENSG00000115464 E055 7.8827615 0.0017642843 8.959430e-02 3.110511e-01 2 61236026 61236073 48 - 1.022 0.857 -0.618
ENSG00000115464 E056 0.4913925 0.0682549415 9.193633e-01   2 61236074 61236160 87 - 0.166 0.181 0.155
ENSG00000115464 E057 10.9779104 0.0027706670 7.241402e-01 8.891065e-01 2 61236161 61236236 76 - 1.092 1.064 -0.102
ENSG00000115464 E058 0.0000000       2 61236237 61236324 88 -      
ENSG00000115464 E059 10.7428884 0.0014514166 7.090516e-01 8.821885e-01 2 61236325 61236389 65 - 1.084 1.054 -0.108
ENSG00000115464 E060 14.0096427 0.0009616497 2.995512e-01 5.924675e-01 2 61241560 61241655 96 - 1.212 1.135 -0.275
ENSG00000115464 E061 9.5668590 0.0014870529 1.785654e-02 1.176921e-01 2 61241766 61241819 54 - 1.116 0.902 -0.791
ENSG00000115464 E062 9.3933256 0.0014967619 5.655025e-01 8.043131e-01 2 61245210 61245288 79 - 1.040 0.990 -0.184
ENSG00000115464 E063 12.1233071 0.0124028467 7.074295e-01 8.812835e-01 2 61246324 61246477 154 - 1.100 1.135 0.126
ENSG00000115464 E064 13.7610818 0.0201314893 1.668127e-01 4.372202e-01 2 61248511 61248683 173 - 1.100 1.231 0.466
ENSG00000115464 E065 10.0282385 0.0188460907 9.810602e-01 9.980434e-01 2 61256384 61256478 95 - 1.040 1.044 0.014
ENSG00000115464 E066 9.0450651 0.0210774652 9.997189e-01 1.000000e+00 2 61256873 61256950 78 - 1.002 1.002 -0.001
ENSG00000115464 E067 8.0495683 0.0108901033 5.992915e-01 8.243353e-01 2 61257052 61257108 57 - 0.982 0.929 -0.197
ENSG00000115464 E068 12.0402570 0.0012455328 1.092813e-01 3.470102e-01 2 61257204 61257350 147 - 1.174 1.044 -0.467
ENSG00000115464 E069 5.6467906 0.0081466095 1.046925e-03 1.552938e-02 2 61259711 61259776 66 - 0.971 0.584 -1.556
ENSG00000115464 E070 0.0000000       2 61265266 61265396 131 -      
ENSG00000115464 E071 10.9014034 0.0134040230 2.695237e-02 1.525661e-01 2 61265397 61265557 161 - 1.167 0.955 -0.774
ENSG00000115464 E072 0.4719109 0.0158266723 5.711260e-02   2 61265585 61265983 399 - 0.285 0.000 -12.740
ENSG00000115464 E073 11.4975403 0.0119690967 9.280761e-01 9.786515e-01 2 61265984 61266167 184 - 1.092 1.101 0.032
ENSG00000115464 E074 0.3812526 0.0163198944 8.490299e-02   2 61277702 61278164 463 - 0.000 0.249 12.529
ENSG00000115464 E075 6.4676443 0.0021365095 7.542726e-01 9.032959e-01 2 61278165 61278285 121 - 0.888 0.857 -0.118
ENSG00000115464 E076 4.8011256 0.0037348137 2.701049e-01 5.637707e-01 2 61278388 61278443 56 - 0.694 0.825 0.527
ENSG00000115464 E077 7.3354786 0.0020677960 8.935027e-01 9.647297e-01 2 61280244 61280348 105 - 0.913 0.929 0.059
ENSG00000115464 E078 8.0595265 0.0017241265 9.380968e-01 9.821853e-01 2 61281090 61281242 153 - 0.960 0.955 -0.020
ENSG00000115464 E079 6.6195453 0.0028681861 7.116495e-01 8.834798e-01 2 61283145 61283269 125 - 0.861 0.902 0.155
ENSG00000115464 E080 4.7279211 0.0031879456 1.496234e-01 4.119796e-01 2 61283409 61283449 41 - 0.832 0.664 -0.682
ENSG00000115464 E081 4.1228315 0.0038788365 2.849177e-01 5.786327e-01 2 61284875 61284957 83 - 0.769 0.639 -0.537
ENSG00000115464 E082 8.0770911 0.0020397626 6.817889e-01 8.682781e-01 2 61288677 61288877 201 - 0.937 0.979 0.155
ENSG00000115464 E083 4.6403451 0.0032325582 7.397387e-01 8.968699e-01 2 61293464 61293550 87 - 0.769 0.732 -0.150
ENSG00000115464 E084 5.8379080 0.0027160193 2.785921e-01 5.717934e-01 2 61294949 61295032 84 - 0.888 0.771 -0.455
ENSG00000115464 E085 8.1716207 0.0016939084 6.643080e-01 8.604415e-01 2 61295168 61295290 123 - 0.981 0.942 -0.148
ENSG00000115464 E086 6.2075696 0.0595057793 6.667484e-01 8.613684e-01 2 61296800 61296925 126 - 0.888 0.825 -0.243
ENSG00000115464 E087 9.3853302 0.0018406836 5.657682e-01 8.044352e-01 2 61300951 61301160 210 - 1.040 0.990 -0.184
ENSG00000115464 E088 4.0300485 0.0075931951 8.241639e-01 9.361749e-01 2 61301354 61301454 101 - 0.714 0.688 -0.108
ENSG00000115464 E089 4.9993757 0.0029724105 6.524724e-01 8.535777e-01 2 61311540 61311609 70 - 0.802 0.752 -0.199
ENSG00000115464 E090 3.9257084 0.0035900671 5.256949e-01 7.783245e-01 2 61311610 61311687 78 - 0.651 0.732 0.335
ENSG00000115464 E091 6.4384229 0.0285796206 3.083472e-01 6.015480e-01 2 61311784 61311910 127 - 0.925 0.808 -0.453
ENSG00000115464 E092 9.1151975 0.0015335126 1.976276e-01 4.789201e-01 2 61314585 61314744 160 - 1.058 0.942 -0.430
ENSG00000115464 E093 4.3885873 0.0183606201 7.463745e-01 8.996729e-01 2 61314875 61314974 100 - 0.751 0.710 -0.167
ENSG00000115464 E094 4.0227247 0.0701616133 8.778255e-01 9.585069e-01 2 61317654 61317767 114 - 0.714 0.688 -0.108
ENSG00000115464 E095 4.8600171 0.0486885287 4.601111e-01 7.315498e-01 2 61319173 61319327 155 - 0.817 0.710 -0.430
ENSG00000115464 E096 0.0000000       2 61322162 61322202 41 -      
ENSG00000115464 E097 3.7846522 0.0039636847 8.013590e-01 9.259087e-01 2 61325375 61325457 83 - 0.694 0.664 -0.125
ENSG00000115464 E098 4.5400454 0.0065625221 6.410957e-01 8.476061e-01 2 61331276 61331371 96 - 0.714 0.771 0.233
ENSG00000115464 E099 4.5071278 0.0033845657 6.130254e-01 8.318104e-01 2 61333882 61333971 90 - 0.769 0.710 -0.237
ENSG00000115464 E100 4.7149784 0.0130094024 9.156624e-02 3.141960e-01 2 61339351 61339478 128 - 0.847 0.639 -0.845
ENSG00000115464 E101 2.0480533 0.1229908334 2.366373e-01 5.255639e-01 2 61339566 61339574 9 - 0.578 0.360 -1.107
ENSG00000115464 E102 4.5953431 0.0426919616 1.641126e-01 4.333113e-01 2 61339575 61339681 107 - 0.832 0.639 -0.788
ENSG00000115464 E103 6.7673727 0.0044407272 1.954916e-01 4.758820e-01 2 61343815 61344029 215 - 0.817 0.955 0.524
ENSG00000115464 E104 0.0000000       2 61346257 61346347 91 -      
ENSG00000115464 E105 10.2994433 0.0013567157 2.455123e-02 1.438195e-01 2 61347870 61348258 389 - 1.139 0.942 -0.720
ENSG00000115464 E106 1.8151539 0.0081751940 2.741359e-01 5.676372e-01 2 61348259 61348271 13 - 0.521 0.360 -0.845
ENSG00000115464 E107 6.6679249 0.0319996656 1.699394e-01 4.420522e-01 2 61348272 61348480 209 - 0.960 0.790 -0.652
ENSG00000115464 E108 3.3941318 0.0340901493 2.647199e-01 5.577978e-01 2 61348756 61348886 131 - 0.714 0.554 -0.693
ENSG00000115464 E109 1.8117560 0.0393758957 3.054563e-01 5.987455e-01 2 61349250 61349285 36 - 0.521 0.360 -0.845
ENSG00000115464 E110 3.2641213 0.0042996830 1.419629e-01 4.008916e-01 2 61350260 61350389 130 - 0.714 0.522 -0.845
ENSG00000115464 E111 5.8283699 0.0023796838 1.691165e-01 4.407309e-01 2 61350568 61350693 126 - 0.901 0.752 -0.582
ENSG00000115464 E112 5.5761767 0.0041655232 8.877146e-02 3.090930e-01 2 61370321 61370413 93 - 0.901 0.710 -0.752
ENSG00000115464 E113 4.1165090 0.0039309334 1.578745e-01 4.246362e-01 2 61370498 61370579 82 - 0.786 0.613 -0.720
ENSG00000115464 E114 2.9211797 0.0071491898 5.774838e-01 8.112038e-01 2 61378363 61378424 62 - 0.628 0.554 -0.331
ENSG00000115464 E115 4.6532836 0.0122145641 7.647665e-01 9.085086e-01 2 61380169 61380361 193 - 0.733 0.771 0.155
ENSG00000115464 E116 3.1839727 0.0727424915 8.592889e-01 9.509963e-01 2 61383269 61383336 68 - 0.604 0.639 0.155
ENSG00000115464 E117 6.3631659 0.0077245320 9.313333e-01 9.799920e-01 2 61394853 61395002 150 - 0.861 0.873 0.044
ENSG00000115464 E118 3.3832677 0.0039936145 1.041074e-01 3.371318e-01 2 61395183 61395233 51 - 0.733 0.522 -0.923
ENSG00000115464 E119 10.3514023 0.0013354354 3.486103e-01 6.391959e-01 2 61405708 61406128 421 - 1.092 1.013 -0.290
ENSG00000115464 E120 2.2045548 0.0062801547 8.321710e-01 9.394125e-01 2 61420746 61420833 88 - 0.490 0.522 0.155
ENSG00000115464 E121 1.3504501 0.0107606435 6.436889e-01 8.490271e-01 2 61470650 61471087 438 - 0.334 0.406 0.418

Help

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