ENSG00000115694

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000401869 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding protein_coding 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 4.642174 4.838928 2.4145314 1.2841421 1.6024066 -0.9999599 0.05940833 0.052225 0.039375 -0.012850 0.73114175 0.001045053 FALSE TRUE
ENST00000403346 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding protein_coding 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 5.114544 2.109014 9.9897717 2.1090137 1.4871653 2.2385022 0.07453333 0.029025 0.152300 0.123275 0.01867288 0.001045053 FALSE TRUE
ENST00000423004 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding protein_coding 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 9.813912 10.865035 8.7080699 4.3690551 4.1979253 -0.3189394 0.12368333 0.111525 0.130250 0.018725 1.00000000 0.001045053 FALSE TRUE
ENST00000450497 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding protein_coding 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 2.933446 6.072105 0.5782431 1.0836611 0.3831358 -3.3700863 0.03590000 0.070850 0.008750 -0.062100 0.04236346 0.001045053 FALSE FALSE
ENST00000487962 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding retained_intron 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 4.792067 7.407527 2.8095517 0.9789284 0.6809975 -1.3954726 0.06124167 0.085525 0.044200 -0.041325 0.52085635 0.001045053 FALSE TRUE
ENST00000492127 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding retained_intron 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 5.550555 7.517451 2.6937189 0.8139165 0.7248275 -1.4772163 0.06994167 0.085225 0.040775 -0.044450 0.41143637 0.001045053 FALSE TRUE
ENST00000494699 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding retained_intron 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 17.544944 21.175336 16.5264662 2.7883484 2.9372251 -0.3574150 0.22493333 0.234050 0.246250 0.012200 0.98343423 0.001045053 FALSE FALSE
ENST00000535007 ENSG00000115694 No_inf pgKDN_inf STK25 protein_coding protein_coding 77.40928 89.37238 65.98054 7.57528 3.218419 -0.4377313 6.694308 7.297933 6.5444624 1.0302882 1.0906448 -0.1569860 0.08800000 0.083625 0.098675 0.015050 0.87374370 0.001045053 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115694 E001 0.7518050 0.1478688726 2.365447e-01 5.255206e-01 2 241492670 241493387 718 - 0.109 0.313 1.894
ENSG00000115694 E002 0.1265070 0.0124430719 7.294656e-01   2 241493388 241493540 153 - 0.000 0.083 11.694
ENSG00000115694 E003 0.2533610 0.0160880796 3.655454e-01   2 241493541 241494706 1166 - 0.000 0.153 12.639
ENSG00000115694 E004 0.0000000       2 241494707 241494842 136 -      
ENSG00000115694 E005 4.2104138 0.0460762376 4.956063e-01 7.567379e-01 2 241494843 241495016 174 - 0.644 0.751 0.446
ENSG00000115694 E006 1.8695610 0.1519663128 3.234430e-01 6.161331e-01 2 241495017 241495018 2 - 0.330 0.521 1.031
ENSG00000115694 E007 2.5932262 0.1918507040 6.861766e-01 8.703552e-01 2 241495019 241495021 3 - 0.515 0.573 0.273
ENSG00000115694 E008 5.5040399 0.1030746887 4.437640e-01 7.184357e-01 2 241495022 241495045 24 - 0.877 0.751 -0.491
ENSG00000115694 E009 6.1103293 0.0849786603 3.420557e-01 6.334487e-01 2 241495046 241495049 4 - 0.923 0.783 -0.543
ENSG00000115694 E010 36.2798031 0.0003923644 2.949919e-02 1.613763e-01 2 241495050 241495248 199 - 1.622 1.519 -0.351
ENSG00000115694 E011 53.3272403 0.0005811031 8.222957e-01 9.355687e-01 2 241495249 241495447 199 - 1.731 1.725 -0.020
ENSG00000115694 E012 26.2176430 0.0114708544 2.614542e-01 5.541863e-01 2 241495448 241495489 42 - 1.375 1.460 0.293
ENSG00000115694 E013 28.9772615 0.0005189822 7.217902e-01 8.880405e-01 2 241495490 241495537 48 - 1.456 1.479 0.080
ENSG00000115694 E014 55.3964456 0.0002910944 9.142873e-01 9.730291e-01 2 241495538 241495701 164 - 1.744 1.744 -0.003
ENSG00000115694 E015 0.3815350 0.0276449546 1.790786e-01   2 241496396 241496397 2 - 0.000 0.213 13.156
ENSG00000115694 E016 50.4282302 0.0005723831 6.228544e-02 2.506500e-01 2 241496398 241496534 137 - 1.747 1.672 -0.253
ENSG00000115694 E017 0.3723465 0.0167972754 7.898854e-01   2 241496535 241496538 4 - 0.109 0.153 0.571
ENSG00000115694 E018 0.4989181 0.0318873517 4.910031e-01   2 241497182 241497299 118 - 0.109 0.213 1.156
ENSG00000115694 E019 0.3802150 0.0325520546 1.795816e-01   2 241497300 241497332 33 - 0.000 0.213 13.143
ENSG00000115694 E020 0.4989181 0.0318873517 4.910031e-01   2 241497333 241497378 46 - 0.109 0.213 1.156
ENSG00000115694 E021 0.7541335 0.0289329915 1.899966e-01 4.689399e-01 2 241497379 241497615 237 - 0.109 0.313 1.893
ENSG00000115694 E022 24.4262288 0.0020746524 1.859240e-01 4.638808e-01 2 241497616 241497687 72 - 1.442 1.365 -0.269
ENSG00000115694 E023 26.4730650 0.0107325189 8.660143e-01 9.538395e-01 2 241498235 241498349 115 - 1.438 1.427 -0.038
ENSG00000115694 E024 4.8650406 0.0100719279 3.613052e-02 1.824977e-01 2 241498350 241498509 160 - 0.584 0.852 1.107
ENSG00000115694 E025 3.7389433 0.1078765000 2.050142e-01 4.881783e-01 2 241498510 241498638 129 - 0.515 0.751 1.030
ENSG00000115694 E026 16.4115663 0.0089286927 8.868465e-02 3.089670e-01 2 241498639 241498669 31 - 1.308 1.174 -0.472
ENSG00000115694 E027 25.1860441 0.0005354342 3.200581e-01 6.128889e-01 2 241498670 241498742 73 - 1.442 1.388 -0.189
ENSG00000115694 E028 25.2852988 0.0005358433 5.737709e-01 8.090198e-01 2 241498743 241498784 42 - 1.390 1.427 0.127
ENSG00000115694 E029 24.3905732 0.0006129582 9.992830e-01 1.000000e+00 2 241498989 241499032 44 - 1.395 1.399 0.012
ENSG00000115694 E030 47.3488349 0.0003135572 4.221243e-01 7.014034e-01 2 241499033 241499174 142 - 1.695 1.664 -0.105
ENSG00000115694 E031 0.2356421 0.0157181207 1.543896e-01   2 241499175 241499190 16 - 0.195 0.000 -13.927
ENSG00000115694 E032 35.3334925 0.0003817962 8.801355e-01 9.595753e-01 2 241499257 241499322 66 - 1.555 1.551 -0.014
ENSG00000115694 E033 35.0120298 0.0004572996 5.064779e-01 7.651860e-01 2 241499323 241499386 64 - 1.527 1.564 0.127
ENSG00000115694 E034 19.2208524 0.0150941755 7.686613e-01 9.105427e-01 2 241499387 241499406 20 - 1.283 1.310 0.095
ENSG00000115694 E035 16.8382126 0.0091527784 6.643719e-01 8.605011e-01 2 241499407 241499414 8 - 1.263 1.231 -0.112
ENSG00000115694 E036 24.3329231 0.0071015323 2.143395e-06 9.024344e-05 2 241499415 241499902 488 - 1.157 1.508 1.226
ENSG00000115694 E037 9.3176989 0.0149757559 5.978681e-02 2.452682e-01 2 241499903 241500046 144 - 0.877 1.078 0.748
ENSG00000115694 E038 5.9751541 0.0023358812 2.893780e-02 1.594535e-01 2 241500047 241500142 96 - 0.671 0.923 1.000
ENSG00000115694 E039 4.2437389 0.0625564089 6.297953e-02 2.523767e-01 2 241500143 241500171 29 - 0.515 0.812 1.273
ENSG00000115694 E040 2.5123895 0.0627872114 2.044561e-02 1.286882e-01 2 241500172 241500172 1 - 0.268 0.662 2.074
ENSG00000115694 E041 28.0717825 0.0084761393 9.543616e-01 9.888296e-01 2 241500173 241500259 87 - 1.455 1.457 0.005
ENSG00000115694 E042 14.0558959 0.0250157695 9.090921e-01 9.711796e-01 2 241500260 241500281 22 - 1.157 1.180 0.083
ENSG00000115694 E043 15.6239377 0.0156217297 6.358745e-01 8.446973e-01 2 241500740 241500762 23 - 1.235 1.198 -0.133
ENSG00000115694 E044 15.9508457 0.0016311767 1.722646e-01 4.449479e-01 2 241500763 241500779 17 - 1.276 1.180 -0.340
ENSG00000115694 E045 14.6079454 0.0280580623 4.121836e-01 6.935635e-01 2 241500780 241500796 17 - 1.235 1.149 -0.308
ENSG00000115694 E046 1.3794940 0.1254250659 1.344242e-01 3.897658e-01 2 241500797 241500847 51 - 0.195 0.462 1.740
ENSG00000115694 E047 1.2523577 0.2154353259 2.258367e-01 5.137407e-01 2 241500848 241500859 12 - 0.195 0.429 1.570
ENSG00000115694 E048 2.2511666 0.0103449254 7.674534e-02 2.832463e-01 2 241500860 241500919 60 - 0.330 0.597 1.378
ENSG00000115694 E049 3.2719088 0.0071388047 6.773556e-04 1.107255e-02 2 241500920 241501077 158 - 0.268 0.767 2.510
ENSG00000115694 E050 0.8875017 0.0175462075 1.338022e-02 9.709086e-02 2 241501357 241501392 36 - 0.000 0.394 14.286
ENSG00000115694 E051 1.2692887 0.0097453036 2.157261e-03 2.700782e-02 2 241501393 241501477 85 - 0.000 0.493 14.754
ENSG00000115694 E052 17.8655705 0.0086640375 5.563037e-02 2.349729e-01 2 241501478 241501516 39 - 1.348 1.204 -0.508
ENSG00000115694 E053 15.2865683 0.0180340489 1.103866e-01 3.485990e-01 2 241501517 241501527 11 - 1.283 1.142 -0.498
ENSG00000115694 E054 36.8432142 0.0004786512 2.534558e-01 5.449860e-01 2 241501528 241501708 181 - 1.601 1.549 -0.178
ENSG00000115694 E055 2.1496792 0.0095494563 7.416543e-04 1.189779e-02 2 241501709 241501799 91 - 0.109 0.641 3.571
ENSG00000115694 E056 2.2740126 0.0074223462 4.206456e-04 7.628480e-03 2 241501832 241502003 172 - 0.109 0.661 3.659
ENSG00000115694 E057 0.3731628 0.1916759666 8.282317e-01   2 241504038 241504096 59 - 0.109 0.153 0.571
ENSG00000115694 E058 13.1498852 0.0221219431 6.760043e-01 8.658253e-01 2 241508006 241508135 130 - 1.165 1.129 -0.131
ENSG00000115694 E059 1.4872702 0.0331668816 5.364528e-01 7.857593e-01 2 241508136 241508317 182 - 0.330 0.429 0.571
ENSG00000115694 E060 0.3538994 0.0309369890 5.812474e-02   2 241508318 241508362 45 - 0.268 0.000 -14.428
ENSG00000115694 E061 5.3935275 0.0640035375 3.923269e-01 6.773290e-01 2 241508443 241508504 62 - 0.860 0.751 -0.429
ENSG00000115694 E062 4.9142251 0.0526422016 6.481592e-01 8.514253e-01 2 241508505 241508695 191 - 0.806 0.735 -0.285
ENSG00000115694 E063 0.0000000       2 241509223 241509730 508 -      

Help

Please Click HERE to learn more details about the results from DEXseq.