ENSG00000115970

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000405975 ENSG00000115970 No_inf pgKDN_inf THADA protein_coding protein_coding 9.572649 9.296387 8.303341 0.8669082 0.5150566 -0.1627926 2.8844110 2.9419848 1.6152270 0.2901501 0.9607718 -0.8610441 0.32947500 0.328125 0.214875 -0.113250 0.70515600 0.02840557 FALSE TRUE
ENST00000407351 ENSG00000115970 No_inf pgKDN_inf THADA protein_coding protein_coding 9.572649 9.296387 8.303341 0.8669082 0.5150566 -0.1627926 1.5879346 0.7308490 3.7363993 0.7308490 0.1603282 2.3382532 0.17950833 0.070025 0.454350 0.384325 0.02840557 0.02840557 FALSE TRUE
ENST00000485018 ENSG00000115970 No_inf pgKDN_inf THADA protein_coding retained_intron 9.572649 9.296387 8.303341 0.8669082 0.5150566 -0.1627926 0.7729290 1.1563391 0.4712937 0.2404015 0.2120471 -1.2769977 0.08032500 0.128425 0.055425 -0.073000 0.67217806 0.02840557 TRUE FALSE
MSTRG.16175.1 ENSG00000115970 No_inf pgKDN_inf THADA protein_coding   9.572649 9.296387 8.303341 0.8669082 0.5150566 -0.1627926 1.6682295 2.3167392 0.5321701 0.3847788 0.5321701 -2.1014921 0.18382500 0.246450 0.055000 -0.191450 0.14209684 0.02840557 FALSE TRUE
MSTRG.16175.6 ENSG00000115970 No_inf pgKDN_inf THADA protein_coding   9.572649 9.296387 8.303341 0.8669082 0.5150566 -0.1627926 0.7303887 0.4875664 1.7035996 0.2829698 0.9848007 1.7840692 0.08420833 0.062675 0.189950 0.127275 0.87344821 0.02840557 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000115970 E001 0.1170040 0.011802082 0.5864442254   2 43230851 43230851 1 - 0.092 0.000 -11.812
ENSG00000115970 E002 1.4598053 0.119770607 0.7060768109 0.880677103 2 43230852 43230954 103 - 0.423 0.356 -0.373
ENSG00000115970 E003 13.8473080 0.011644322 0.6147257985 0.832633196 2 43230955 43231206 252 - 1.152 1.190 0.138
ENSG00000115970 E004 10.6191811 0.040945221 0.6357054883 0.844548607 2 43231207 43231343 137 - 1.098 1.028 -0.256
ENSG00000115970 E005 2.0456329 0.065836995 0.0713355845 0.270601591 2 43232713 43232882 170 - 0.609 0.305 -1.589
ENSG00000115970 E006 0.0000000       2 43277227 43277301 75 -      
ENSG00000115970 E007 3.6753749 0.011889287 0.8119479642 0.930801353 2 43279765 43279896 132 - 0.656 0.683 0.112
ENSG00000115970 E008 4.4899864 0.004271828 0.2261975884 0.514214727 2 43286908 43286984 77 - 0.807 0.659 -0.604
ENSG00000115970 E009 5.2457238 0.002889511 0.6367345892 0.844885635 2 43286985 43287061 77 - 0.823 0.766 -0.225
ENSG00000115970 E010 2.4615052 0.057515668 0.5482691132 0.793408810 2 43291696 43291697 2 - 0.494 0.580 0.401
ENSG00000115970 E011 5.2498432 0.002900688 0.6372145653 0.845160627 2 43291698 43291768 71 - 0.823 0.766 -0.225
ENSG00000115970 E012 1.8695005 0.007548154 0.0465395223 0.211735871 2 43291769 43292103 335 - 0.288 0.580 1.572
ENSG00000115970 E013 8.2307132 0.001752852 0.3303748988 0.622885669 2 43292104 43292222 119 - 0.919 1.007 0.328
ENSG00000115970 E014 10.7945172 0.001343145 0.3980779825 0.682170048 2 43292834 43292991 158 - 1.037 1.104 0.243
ENSG00000115970 E015 7.1192418 0.003513850 0.3942851993 0.679101295 2 43292992 43293092 101 - 0.867 0.949 0.312
ENSG00000115970 E016 6.2555991 0.003540325 0.4668103552 0.735441661 2 43293093 43293213 121 - 0.823 0.896 0.282
ENSG00000115970 E017 4.5407782 0.003258937 0.4503841981 0.723739475 2 43320446 43320540 95 - 0.699 0.785 0.347
ENSG00000115970 E018 0.1272623 0.012327655 0.4931608254   2 43333155 43333263 109 - 0.000 0.098 11.933
ENSG00000115970 E019 0.0000000       2 43343001 43344120 1120 -      
ENSG00000115970 E020 0.0000000       2 43344121 43344121 1 -      
ENSG00000115970 E021 2.4362920 0.008843422 0.8038297080 0.927095171 2 43344122 43344156 35 - 0.555 0.517 -0.177
ENSG00000115970 E022 5.2494390 0.002846434 0.8660103071 0.953839525 2 43344157 43344237 81 - 0.807 0.785 -0.089
ENSG00000115970 E023 0.1265070 0.012308507 0.4930631121   2 43370120 43370197 78 - 0.000 0.098 11.933
ENSG00000115970 E024 0.0000000       2 43371965 43372122 158 -      
ENSG00000115970 E025 0.0000000       2 43372123 43372237 115 -      
ENSG00000115970 E026 0.0000000       2 43391792 43391922 131 -      
ENSG00000115970 E027 8.1504153 0.001779060 0.0366148944 0.184095060 2 43397971 43398139 169 - 0.853 1.048 0.734
ENSG00000115970 E028 2.8686204 0.031475039 0.0188010911 0.121891820 2 43428100 43428102 3 - 0.382 0.726 1.615
ENSG00000115970 E029 6.6506988 0.002479505 0.1594641990 0.426871928 2 43428103 43428231 129 - 0.807 0.949 0.543
ENSG00000115970 E030 4.0446861 0.003771523 0.6724976875 0.864445963 2 43430213 43430302 90 - 0.678 0.726 0.200
ENSG00000115970 E031 0.0000000       2 43463034 43463259 226 -      
ENSG00000115970 E032 0.1268540 0.012390938 0.4929625981   2 43484278 43484453 176 - 0.000 0.098 11.933
ENSG00000115970 E033 5.0069332 0.003142697 0.8525669199 0.947933212 2 43485234 43485325 92 - 0.791 0.766 -0.099
ENSG00000115970 E034 0.0000000       2 43486437 43486672 236 -      
ENSG00000115970 E035 7.2075174 0.002176801 0.9576201781 0.989902396 2 43498833 43498955 123 - 0.919 0.910 -0.035
ENSG00000115970 E036 5.1238108 0.003035881 0.7393062470 0.896704143 2 43505622 43505717 96 - 0.807 0.766 -0.163
ENSG00000115970 E037 3.0569065 0.020205549 0.9872952638 0.999639235 2 43505718 43505735 18 - 0.609 0.608 -0.003
ENSG00000115970 E038 5.7356712 0.007850103 0.6775278373 0.866374462 2 43508648 43508780 133 - 0.853 0.802 -0.196
ENSG00000115970 E039 5.3612437 0.003322802 0.5408757170 0.788686568 2 43527879 43527988 110 - 0.838 0.766 -0.284
ENSG00000115970 E040 0.1265070 0.012308507 0.4930631121   2 43538429 43538566 138 - 0.000 0.098 11.933
ENSG00000115970 E041 4.7637018 0.004144339 0.8352632642 0.940737338 2 43541159 43541229 71 - 0.774 0.747 -0.110
ENSG00000115970 E042 5.1287767 0.002690029 0.7397488417 0.896869909 2 43541230 43541316 87 - 0.807 0.766 -0.163
ENSG00000115970 E043 5.2202488 0.073267658 0.2787825240 0.572028890 2 43549210 43549325 116 - 0.867 0.705 -0.643
ENSG00000115970 E044 3.3411533 0.004235454 0.0001866647 0.003948069 2 43549326 43549368 43 - 0.823 0.305 -2.473
ENSG00000115970 E045 5.5369038 0.030588593 0.0081233771 0.069809787 2 43551789 43551922 134 - 0.954 0.608 -1.390
ENSG00000115970 E046 2.4070893 0.008131172 0.0388170883 0.190583599 2 43551923 43551925 3 - 0.656 0.356 -1.473
ENSG00000115970 E047 0.1271363 0.012336853 0.4931277882   2 43552068 43552203 136 - 0.000 0.098 11.933
ENSG00000115970 E048 5.0982155 0.082037473 0.3194436640 0.612145801 2 43552204 43552339 136 - 0.852 0.705 -0.587
ENSG00000115970 E049 0.0000000       2 43556093 43556344 252 -      
ENSG00000115970 E050 1.4494403 0.014172691 0.3178959554 0.610634677 2 43556345 43556348 4 - 0.460 0.305 -0.888
ENSG00000115970 E051 6.0827079 0.003739564 0.4140420853 0.694434328 2 43556349 43556555 207 - 0.894 0.802 -0.353
ENSG00000115970 E052 3.7841552 0.003774508 0.7699532735 0.911231894 2 43560234 43560381 148 - 0.699 0.659 -0.168
ENSG00000115970 E053 1.1219180 0.015304417 0.0693189364 0.266095908 2 43560382 43560385 4 - 0.168 0.444 1.920
ENSG00000115970 E054 1.3792740 0.027853290 0.0240154238 0.141898321 2 43562218 43566693 4476 - 0.168 0.517 2.282
ENSG00000115970 E055 0.1186381 0.011848042 0.5865092112   2 43566694 43566697 4 - 0.092 0.000 -11.814
ENSG00000115970 E056 3.7992407 0.183083975 0.8847068805 0.961168189 2 43566698 43566821 124 - 0.656 0.705 0.205
ENSG00000115970 E057 4.3235526 0.003754922 0.0758616038 0.281455578 2 43570388 43570510 123 - 0.609 0.819 0.871
ENSG00000115970 E058 0.0000000       2 43570511 43570515 5 -      
ENSG00000115970 E059 4.2912963 0.003698540 0.6697404187 0.862758612 2 43571707 43571862 156 - 0.699 0.747 0.195
ENSG00000115970 E060 4.6721891 0.003287337 0.3600625722 0.649615802 2 43572814 43572965 152 - 0.699 0.802 0.417
ENSG00000115970 E061 1.2151839 0.016886994 0.6256365697 0.838941915 2 43572966 43572992 27 - 0.382 0.305 -0.473
ENSG00000115970 E062 14.4438673 0.003594339 0.7812354934 0.915802454 2 43574336 43575027 692 - 1.180 1.198 0.063
ENSG00000115970 E063 2.1986663 0.035225881 0.7752353432 0.913680376 2 43577022 43577122 101 - 0.526 0.482 -0.210
ENSG00000115970 E064 1.9624262 0.007429328 0.8610439891 0.951853949 2 43577123 43577234 112 - 0.460 0.482 0.112
ENSG00000115970 E065 0.9724323 0.012758789 0.5618599212 0.802014283 2 43577235 43577242 8 - 0.338 0.246 -0.625
ENSG00000115970 E066 2.8352019 0.006526803 0.4071397639 0.689637831 2 43578513 43578607 95 - 0.526 0.634 0.491
ENSG00000115970 E067 3.1944230 0.004451246 0.5407288023 0.788634168 2 43581741 43581928 188 - 0.583 0.659 0.335
ENSG00000115970 E068 1.6847432 0.014838869 0.1496246492 0.411979571 2 43586401 43586449 49 - 0.526 0.305 -1.210
ENSG00000115970 E069 1.4609962 0.009043869 0.6716606248 0.863824498 2 43586702 43586734 33 - 0.423 0.356 -0.373
ENSG00000115970 E070 3.1836307 0.027635527 0.8503628221 0.946982055 2 43586854 43587002 149 - 0.609 0.634 0.112
ENSG00000115970 E071 3.1670427 0.004498022 0.5765845388 0.810527503 2 43590824 43590954 131 - 0.656 0.580 -0.335
ENSG00000115970 E072 2.9089311 0.005414943 0.3124563523 0.605835601 2 43591952 43592046 95 - 0.656 0.517 -0.625
ENSG00000115970 E073 3.4383201 0.026031411 0.5720805208 0.808177244 2 43592317 43592416 100 - 0.609 0.683 0.319
ENSG00000115970 E074 0.0000000       2 43592417 43592420 4 -      
ENSG00000115970 E075 0.3549719 0.015777389 0.1208875673   2 43592844 43592890 47 - 0.232 0.000 -13.399
ENSG00000115970 E076 0.2374063 0.207550820 0.3214301409   2 43595647 43595930 284 - 0.168 0.000 -12.815
ENSG00000115970 E077 1.2340082 0.010200007 0.4445576971 0.719103729 2 43595931 43596043 113 - 0.288 0.403 0.697

Help

Please Click HERE to learn more details about the results from DEXseq.