ENSG00000116679

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000367498 ENSG00000116679 No_inf pgKDN_inf IVNS1ABP protein_coding protein_coding 260.2404 222.9345 262.0252 1.976548 5.156533 0.2330761 48.59943 45.132989 53.880845 3.776534 1.555373 0.25553827 0.18886667 0.202550 0.205600 0.003050 0.993740491 0.001690309 FALSE  
ENST00000422754 ENSG00000116679 No_inf pgKDN_inf IVNS1ABP protein_coding protein_coding 260.2404 222.9345 262.0252 1.976548 5.156533 0.2330761 28.07362 22.497454 29.632334 1.244105 2.354070 0.39725621 0.10746667 0.100850 0.113175 0.012325 0.852327490 0.001690309 FALSE  
ENST00000459929 ENSG00000116679 No_inf pgKDN_inf IVNS1ABP protein_coding protein_coding_CDS_not_defined 260.2404 222.9345 262.0252 1.976548 5.156533 0.2330761 56.55150 38.093863 64.180444 4.555608 4.252341 0.75242126 0.21478333 0.170950 0.245725 0.074775 0.327109218 0.001690309 FALSE  
ENST00000475046 ENSG00000116679 No_inf pgKDN_inf IVNS1ABP protein_coding retained_intron 260.2404 222.9345 262.0252 1.976548 5.156533 0.2330761 74.71284 67.485259 70.970250 3.161630 6.745981 0.07263148 0.28740000 0.302525 0.269950 -0.032575 0.808785624 0.001690309 FALSE  
ENST00000480769 ENSG00000116679 No_inf pgKDN_inf IVNS1ABP protein_coding retained_intron 260.2404 222.9345 262.0252 1.976548 5.156533 0.2330761 22.25984 37.210346 8.778488 2.368994 3.165429 -2.08240464 0.09024167 0.167025 0.033475 -0.133550 0.074999685 0.001690309 FALSE  
MSTRG.2407.1 ENSG00000116679 No_inf pgKDN_inf IVNS1ABP protein_coding   260.2404 222.9345 262.0252 1.976548 5.156533 0.2330761 25.79507 8.706877 30.995564 1.475631 2.848029 1.83064377 0.09500000 0.039100 0.118400 0.079300 0.001690309 0.001690309 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000116679 E001 189.375137 9.318589e-05 5.681057e-15 9.605082e-13 1 185296388 185297014 627 - 2.186 2.359 0.578
ENSG00000116679 E002 421.689782 3.711063e-04 6.725470e-11 6.896036e-09 1 185297015 185297770 756 - 2.571 2.676 0.352
ENSG00000116679 E003 759.967809 8.761812e-05 2.012729e-06 8.540875e-05 1 185297771 185298288 518 - 2.855 2.907 0.171
ENSG00000116679 E004 8.721028 1.601161e-02 3.706216e-01 6.589235e-01 1 185298405 185299709 1305 - 0.939 1.032 0.346
ENSG00000116679 E005 441.458875 7.128156e-05 4.087304e-04 7.442425e-03 1 185299710 185299883 174 - 2.620 2.671 0.169
ENSG00000116679 E006 283.560453 7.839522e-05 3.639315e-01 6.526553e-01 1 185299999 185300096 98 - 2.446 2.463 0.056
ENSG00000116679 E007 158.330234 1.919208e-04 3.906383e-01 6.761266e-01 1 185300097 185300130 34 - 2.192 2.213 0.072
ENSG00000116679 E008 147.277272 1.175720e-04 5.482137e-01 7.933712e-01 1 185300217 185300245 29 - 2.163 2.179 0.052
ENSG00000116679 E009 214.986443 5.645544e-04 4.299669e-01 7.079785e-01 1 185300246 185300343 98 - 2.343 2.326 -0.057
ENSG00000116679 E010 1.482424 1.814130e-01 5.148115e-01 7.711823e-01 1 185300344 185300436 93 - 0.336 0.447 0.627
ENSG00000116679 E011 227.389647 7.826068e-05 2.524436e-01 5.439589e-01 1 185300437 185300558 122 - 2.370 2.347 -0.074
ENSG00000116679 E012 1.104918 2.299439e-02 6.383011e-01 8.458717e-01 1 185300559 185300918 360 - 0.286 0.359 0.465
ENSG00000116679 E013 311.088889 6.569128e-05 7.196309e-02 2.720444e-01 1 185300972 185301196 225 - 2.509 2.479 -0.100
ENSG00000116679 E014 11.773585 1.483193e-03 2.894195e-04 5.641326e-03 1 185301197 185301433 237 - 0.927 1.236 1.120
ENSG00000116679 E015 207.353099 1.228110e-04 5.930170e-01 8.205635e-01 1 185301434 185301563 130 - 2.324 2.313 -0.036
ENSG00000116679 E016 28.010577 6.359784e-03 5.768098e-04 9.758362e-03 1 185301564 185301714 151 - 1.337 1.562 0.776
ENSG00000116679 E017 158.472489 2.062411e-04 6.978250e-03 6.299759e-02 1 185305536 185305643 108 - 2.234 2.168 -0.219
ENSG00000116679 E018 221.225303 1.021509e-04 1.915352e-04 4.039992e-03 1 185305644 185306484 841 - 2.307 2.384 0.255
ENSG00000116679 E019 70.395956 3.123582e-04 1.519606e-01 4.156435e-01 1 185306485 185306625 141 - 1.878 1.827 -0.173
ENSG00000116679 E020 23.945103 8.094174e-04 7.558178e-01 9.037841e-01 1 185306750 185307013 264 - 1.406 1.387 -0.064
ENSG00000116679 E021 173.292351 1.573142e-03 1.728450e-07 9.561254e-06 1 185307014 185307139 126 - 2.307 2.161 -0.490
ENSG00000116679 E022 193.939201 1.032174e-04 5.074345e-06 1.905848e-04 1 185307489 185307662 174 - 2.336 2.237 -0.330
ENSG00000116679 E023 4.398571 7.187806e-03 9.687390e-01 9.936412e-01 1 185307680 185308017 338 - 0.734 0.730 -0.017
ENSG00000116679 E024 88.831098 2.580705e-04 1.545267e-03 2.092454e-02 1 185308800 185308875 76 - 2.001 1.899 -0.344
ENSG00000116679 E025 128.554200 1.631167e-04 2.214846e-12 2.758787e-10 1 185309003 185309172 170 - 2.196 2.006 -0.638
ENSG00000116679 E026 115.828476 2.009627e-04 7.115708e-09 5.186197e-07 1 185309383 185309511 129 - 2.141 1.976 -0.554
ENSG00000116679 E027 173.249134 1.072478e-04 3.980098e-07 2.019404e-05 1 185311095 185311322 228 - 2.295 2.178 -0.390
ENSG00000116679 E028 179.001904 9.605562e-05 1.406107e-08 9.710238e-07 1 185316953 185317385 433 - 2.314 2.185 -0.429

Help

Please Click HERE to learn more details about the results from DEXseq.