ENSG00000118960

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000304031 ENSG00000118960 No_inf pgKDN_inf HS1BP3 protein_coding protein_coding 11.19581 11.11676 11.26028 0.6735663 0.5218771 0.01849031 6.5505167 7.9767000 4.7306290 0.42133910 1.5894703 -0.7525210 0.58755000 0.718725 0.425475 -0.293250 0.554339454 0.003271299 FALSE TRUE
ENST00000402541 ENSG00000118960 No_inf pgKDN_inf HS1BP3 protein_coding protein_coding 11.19581 11.11676 11.26028 0.6735663 0.5218771 0.01849031 0.7484275 0.4687680 0.8514027 0.03332887 0.1188749 0.8473610 0.06707500 0.042500 0.074825 0.032325 0.805471230 0.003271299 FALSE TRUE
ENST00000406618 ENSG00000118960 No_inf pgKDN_inf HS1BP3 protein_coding protein_coding 11.19581 11.11676 11.26028 0.6735663 0.5218771 0.01849031 0.4892937 0.1364818 0.7872814 0.08879167 0.3454379 2.4443675 0.04392500 0.013750 0.069075 0.055325 0.444309995 0.003271299 FALSE TRUE
ENST00000445102 ENSG00000118960 No_inf pgKDN_inf HS1BP3 protein_coding protein_coding 11.19581 11.11676 11.26028 0.6735663 0.5218771 0.01849031 2.0485319 2.1506168 1.6644811 0.20179033 0.2444330 -0.3677291 0.18395833 0.193325 0.147400 -0.045925 0.836911496 0.003271299 FALSE FALSE
MSTRG.15896.4 ENSG00000118960 No_inf pgKDN_inf HS1BP3 protein_coding   11.19581 11.11676 11.26028 0.6735663 0.5218771 0.01849031 1.0415383 0.0000000 3.1246148 0.00000000 1.6760551 8.2921443 0.09145833 0.000000 0.274375 0.274375 0.003271299 0.003271299 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000118960 E001 0.0000000       2 20560448 20560515 68 -      
ENSG00000118960 E002 0.0000000       2 20592617 20592794 178 -      
ENSG00000118960 E003 0.0000000       2 20598208 20598265 58 -      
ENSG00000118960 E004 3.1920065 0.0047688734 0.863822231 0.95287843 2 20612297 20617780 5484 - 0.611 0.630 0.086
ENSG00000118960 E005 0.2362687 0.0158749854 0.214870650   2 20617781 20617817 37 - 0.180 0.000 -10.367
ENSG00000118960 E006 57.7643822 0.0002833467 0.110427270 0.34865849 2 20617818 20619245 1428 - 1.742 1.789 0.159
ENSG00000118960 E007 0.0000000       2 20622179 20622187 9 -      
ENSG00000118960 E008 0.8518439 0.0130178242 0.624939512 0.83858031 2 20622188 20622319 132 - 0.307 0.231 -0.552
ENSG00000118960 E009 16.6470729 0.0009351396 0.083624888 0.29817696 2 20622320 20623895 1576 - 1.179 1.294 0.404
ENSG00000118960 E010 10.5315323 0.0493292934 0.840181571 0.94259585 2 20623896 20624031 136 - 1.071 1.052 -0.070
ENSG00000118960 E011 9.9404917 0.0020768063 0.865724322 0.95372968 2 20624732 20624892 161 - 1.032 1.043 0.041
ENSG00000118960 E012 12.5182148 0.0011889796 0.009829266 0.07936103 2 20634716 20638435 3720 - 1.228 1.024 -0.734
ENSG00000118960 E013 14.8657860 0.0275497581 0.741541323 0.89751778 2 20638436 20638652 217 - 1.187 1.209 0.078
ENSG00000118960 E014 2.0258735 0.1375517618 0.024224103 0.14260017 2 20640025 20640972 948 - 0.662 0.231 -2.357
ENSG00000118960 E015 10.3415767 0.0016824328 0.039186307 0.19168408 2 20640973 20641134 162 - 1.141 0.962 -0.651
ENSG00000118960 E016 5.8881290 0.0029646312 0.987649923 0.99983114 2 20641135 20641180 46 - 0.839 0.835 -0.017
ENSG00000118960 E017 8.8406528 0.0016870351 0.730054935 0.89255481 2 20645340 20645505 166 - 0.976 1.004 0.104
ENSG00000118960 E018 0.1187032 0.0119298563 0.495040945   2 20650341 20650390 50 - 0.099 0.000 -9.450
ENSG00000118960 E019 2.8425669 0.0057157644 0.207895659 0.49158860 2 20651032 20651130 99 - 0.485 0.653 0.770

Help

Please Click HERE to learn more details about the results from DEXseq.