ENSG00000119041

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000263956 ENSG00000119041 No_inf pgKDN_inf GTF3C3 protein_coding protein_coding 26.65061 24.2612 29.71862 1.363894 2.35063 0.292607 1.4944954 2.465970 1.524171 0.6425604 0.7310118 -0.6905342 0.05920833 0.103575 0.053550 -0.050025 0.72188147 0.00411376 FALSE  
ENST00000448087 ENSG00000119041 No_inf pgKDN_inf GTF3C3 protein_coding protein_coding 26.65061 24.2612 29.71862 1.363894 2.35063 0.292607 1.7166338 2.108339 1.583883 0.3743932 0.3119448 -0.4103874 0.06480833 0.085225 0.052400 -0.032825 0.78771600 0.00411376 FALSE  
ENST00000470386 ENSG00000119041 No_inf pgKDN_inf GTF3C3 protein_coding protein_coding_CDS_not_defined 26.65061 24.2612 29.71862 1.363894 2.35063 0.292607 0.8652628 0.000000 1.800589 0.0000000 1.8005886 7.5003149 0.02629167 0.000000 0.051700 0.051700 0.85083763 0.00411376 FALSE  
ENST00000481098 ENSG00000119041 No_inf pgKDN_inf GTF3C3 protein_coding retained_intron 26.65061 24.2612 29.71862 1.363894 2.35063 0.292607 0.8704677 1.259512 0.000000 0.3807747 0.0000000 -6.9881300 0.03325000 0.050525 0.000000 -0.050525 0.00411376 0.00411376    
ENST00000651042 ENSG00000119041 No_inf pgKDN_inf GTF3C3 protein_coding nonsense_mediated_decay 26.65061 24.2612 29.71862 1.363894 2.35063 0.292607 10.4937220 8.035795 11.071352 0.9012590 0.6412867 0.4618271 0.39903333 0.332275 0.377900 0.045625 0.85314455 0.00411376 TRUE  
MSTRG.17414.3 ENSG00000119041 No_inf pgKDN_inf GTF3C3 protein_coding   26.65061 24.2612 29.71862 1.363894 2.35063 0.292607 9.6084470 9.759552 11.247335 0.6721456 1.0573053 0.2045010 0.35951667 0.404075 0.378075 -0.026000 0.92509822 0.00411376 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000119041 E001 2.3667821 0.0582044993 0.049404232 0.21917972 2 196763035 196763728 694 - 0.339 0.658 1.585
ENSG00000119041 E002 54.5920796 0.0002786778 0.001287235 0.01817427 2 196763729 196764578 850 - 1.678 1.803 0.425
ENSG00000119041 E003 23.6728012 0.0006997030 0.393985728 0.67881744 2 196764579 196764685 107 - 1.416 1.367 -0.170
ENSG00000119041 E004 29.4947323 0.0041996253 0.678197087 0.86677445 2 196766565 196766717 153 - 1.472 1.497 0.087
ENSG00000119041 E005 1.0159923 0.0120816457 0.001598861 0.02148840 2 196766718 196767004 287 - 0.000 0.481 13.678
ENSG00000119041 E006 22.8081205 0.0006478061 0.372830425 0.66058874 2 196769915 196770039 125 - 1.348 1.403 0.192
ENSG00000119041 E007 30.4833321 0.0006282739 0.052655229 0.22803173 2 196771748 196771938 191 - 1.443 1.546 0.355
ENSG00000119041 E008 20.1704551 0.0007403160 0.066163866 0.25901734 2 196772916 196773006 91 - 1.262 1.381 0.417
ENSG00000119041 E009 25.1649181 0.0006741045 0.709109766 0.88219981 2 196773007 196773153 147 - 1.428 1.408 -0.069
ENSG00000119041 E010 0.6266801 0.0148821418 0.152366002 0.41631835 2 196773669 196773726 58 - 0.092 0.304 2.099
ENSG00000119041 E011 0.7266918 0.0140497501 0.459927194 0.73151732 2 196773913 196774140 228 - 0.289 0.178 -0.901
ENSG00000119041 E012 0.0000000       2 196774989 196775115 127 -      
ENSG00000119041 E013 21.0214809 0.0043702745 0.990055895 1.00000000 2 196775116 196775247 132 - 1.343 1.343 -0.002
ENSG00000119041 E014 4.5530178 0.0030755522 0.312017815 0.60538056 2 196775248 196775251 4 - 0.680 0.801 0.491
ENSG00000119041 E015 13.8910369 0.0052743728 0.190587513 0.46977501 2 196776010 196776111 102 - 1.116 1.223 0.380
ENSG00000119041 E016 23.2983710 0.0005916207 0.371345997 0.65933950 2 196776427 196776629 203 - 1.357 1.412 0.190
ENSG00000119041 E017 12.3506938 0.0075042433 0.010688026 0.08390332 2 196777639 196778895 1257 - 0.999 1.223 0.805
ENSG00000119041 E018 11.0139285 0.0012286778 0.923058954 0.97635343 2 196778896 196778963 68 - 1.075 1.084 0.035
ENSG00000119041 E019 14.1088495 0.0010055059 0.129969220 0.38240038 2 196778964 196779067 104 - 1.233 1.119 -0.404
ENSG00000119041 E020 0.9626406 0.0199711570 0.182485119 0.45886300 2 196780089 196780558 470 - 0.384 0.178 -1.486
ENSG00000119041 E021 14.8299606 0.0009544550 0.067740946 0.26268036 2 196780559 196780662 104 - 1.262 1.127 -0.476
ENSG00000119041 E022 0.5986116 0.0151524777 0.196273717 0.47692497 2 196780663 196780901 239 - 0.289 0.098 -1.901
ENSG00000119041 E023 9.8601051 0.0143789936 0.216307410 0.50240402 2 196784857 196784929 73 - 1.092 0.971 -0.442
ENSG00000119041 E024 5.8411190 0.0172448743 0.264779016 0.55781122 2 196785441 196785443 3 - 0.895 0.764 -0.512
ENSG00000119041 E025 14.9843244 0.0010146583 0.173652133 0.44703137 2 196785444 196785588 145 - 1.250 1.151 -0.351
ENSG00000119041 E026 16.6998572 0.0012807741 0.284540148 0.57823618 2 196789204 196789369 166 - 1.284 1.209 -0.261
ENSG00000119041 E027 16.1312872 0.0008780602 0.007093789 0.06361763 2 196789879 196790032 154 - 1.319 1.127 -0.679
ENSG00000119041 E028 6.5441094 0.0023109636 0.051955528 0.22630992 2 196790033 196790070 38 - 0.967 0.764 -0.783
ENSG00000119041 E029 15.2254242 0.0010193180 0.244859546 0.53524207 2 196791337 196791460 124 - 1.250 1.167 -0.296
ENSG00000119041 E030 0.0000000       2 196791812 196791897 86 -      
ENSG00000119041 E031 0.1186381 0.0120415582 0.573376706   2 196792951 196792954 4 - 0.092 0.000 -11.320
ENSG00000119041 E032 0.1186381 0.0120415582 0.573376706   2 196792955 196792955 1 - 0.092 0.000 -11.320
ENSG00000119041 E033 15.5649751 0.0021531773 0.119207227 0.36482566 2 196792956 196793152 197 - 1.273 1.159 -0.402
ENSG00000119041 E034 10.3308077 0.0014450363 0.121912575 0.36939510 2 196797797 196797908 112 - 1.116 0.983 -0.486
ENSG00000119041 E035 0.1186381 0.0120415582 0.573376706   2 196799240 196799254 15 - 0.092 0.000 -11.320
ENSG00000119041 E036 0.0000000       2 196799255 196799454 200 -      
ENSG00000119041 E037 0.1186381 0.0120415582 0.573376706   2 196799455 196799509 55 - 0.092 0.000 -11.320
ENSG00000119041 E038 9.1080732 0.0015329123 0.091930242 0.31487712 2 196799510 196799725 216 - 1.075 0.921 -0.567

Help

Please Click HERE to learn more details about the results from DEXseq.