ENSG00000119335

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000322030 ENSG00000119335 No_inf pgKDN_inf SET protein_coding protein_coding 179.2329 146.8422 208.2828 3.859052 4.030058 0.5042483 90.523012 67.71581 103.609806 4.7591712 3.2199412 0.6135222 0.5024333 0.460175 0.497250 0.037075 8.099154e-01 1.151963e-41 FALSE TRUE
ENST00000372686 ENSG00000119335 No_inf pgKDN_inf SET protein_coding protein_coding 179.2329 146.8422 208.2828 3.859052 4.030058 0.5042483 10.456282 27.83202 0.000000 0.9220316 0.0000000 -11.4430481 0.0693750 0.189775 0.000000 -0.189775 1.151963e-41 1.151963e-41 FALSE TRUE
ENST00000372692 ENSG00000119335 No_inf pgKDN_inf SET protein_coding protein_coding 179.2329 146.8422 208.2828 3.859052 4.030058 0.5042483 5.190192 11.24131 1.453018 6.9106445 0.6411724 -2.9430733 0.0331750 0.076575 0.007050 -0.069525 1.239571e-01 1.151963e-41 FALSE TRUE
ENST00000477806 ENSG00000119335 No_inf pgKDN_inf SET protein_coding protein_coding_CDS_not_defined 179.2329 146.8422 208.2828 3.859052 4.030058 0.5042483 23.929624 6.24960 37.080827 3.4011420 3.6871769 2.5669200 0.1243750 0.040975 0.177275 0.136300 6.682113e-02 1.151963e-41   FALSE
ENST00000686840 ENSG00000119335 No_inf pgKDN_inf SET protein_coding protein_coding 179.2329 146.8422 208.2828 3.859052 4.030058 0.5042483 40.250820 20.38944 59.600547 6.9540491 4.7544761 1.5470381 0.2170000 0.139500 0.287500 0.148000 7.652476e-01 1.151963e-41 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000119335 E001 2.6477432 5.458863e-03 1.616463e-05 5.146537e-04 9 128683424 128683446 23 + 0.161 0.784 3.504
ENSG00000119335 E002 3.8722217 2.375508e-02 8.959372e-04 1.377894e-02 9 128683655 128683779 125 + 0.410 0.870 2.034
ENSG00000119335 E003 2.2754315 8.196726e-02 1.040052e-04 2.450597e-03 9 128683780 128683829 50 + 0.088 0.744 4.343
ENSG00000119335 E004 1.2516317 1.672169e-02 2.840715e-02 1.577707e-01 9 128683830 128683830 1 + 0.161 0.497 2.256
ENSG00000119335 E005 37.8908540 3.657684e-04 3.153256e-01 6.082536e-01 9 128683831 128684007 177 + 1.611 1.563 -0.165
ENSG00000119335 E006 1.8845169 1.414595e-02 1.157283e-03 1.674273e-02 9 128684008 128684011 4 + 0.161 0.651 2.956
ENSG00000119335 E007 0.2536433 1.598885e-02 1.880037e-01   9 128685083 128685213 131 + 0.000 0.186 12.622
ENSG00000119335 E008 75.7089953 9.382432e-04 5.316338e-03 5.179852e-02 9 128689222 128689537 316 + 1.929 1.828 -0.341
ENSG00000119335 E009 78.8275099 1.954060e-04 2.314121e-01 5.199758e-01 9 128689538 128689655 118 + 1.920 1.880 -0.134
ENSG00000119335 E010 0.4971544 2.869012e-02 2.454660e-01   9 128689975 128690026 52 + 0.088 0.256 1.841
ENSG00000119335 E011 0.2537079 2.653360e-01 2.428758e-01   9 128690250 128690280 31 + 0.000 0.186 11.743
ENSG00000119335 E012 0.2537079 2.653360e-01 2.428758e-01   9 128690281 128690284 4 + 0.000 0.186 11.743
ENSG00000119335 E013 0.4992000 4.522271e-01 4.647513e-01   9 128690285 128690353 69 + 0.088 0.256 1.840
ENSG00000119335 E014 0.6270271 1.490865e-02 1.205733e-01 3.673390e-01 9 128690354 128690439 86 + 0.088 0.316 2.256
ENSG00000119335 E015 0.8804182 2.234199e-02 3.044944e-02 1.641932e-01 9 128690440 128690544 105 + 0.088 0.416 2.841
ENSG00000119335 E016 1.4951762 1.450611e-01 1.096212e-01 3.474967e-01 9 128690545 128690727 183 + 0.223 0.532 1.841
ENSG00000119335 E017 5.5716245 2.543916e-03 1.223458e-02 9.156460e-02 9 128690728 128691169 442 + 0.661 0.942 1.114
ENSG00000119335 E018 76.0530839 1.872786e-04 3.087561e-01 6.021280e-01 9 128691170 128691175 6 + 1.902 1.868 -0.116
ENSG00000119335 E019 128.1978867 1.554377e-04 2.303234e-03 2.836133e-02 9 128691176 128691227 52 + 2.147 2.066 -0.270
ENSG00000119335 E020 3.0630669 4.777226e-02 5.587484e-01 8.002639e-01 9 128691241 128691857 617 + 0.567 0.651 0.372
ENSG00000119335 E021 186.4561706 6.065728e-04 3.849601e-04 7.078909e-03 9 128691858 128692000 143 + 2.310 2.226 -0.279
ENSG00000119335 E022 2.2017262 6.834397e-03 7.127480e-01 8.839530e-01 9 128692351 128692661 311 + 0.479 0.532 0.256
ENSG00000119335 E023 216.3180716 4.197700e-04 2.054591e-02 1.291012e-01 9 128692662 128692765 104 + 2.359 2.310 -0.163
ENSG00000119335 E024 209.6664822 1.204442e-04 1.067559e-01 3.423170e-01 9 128692868 128692981 114 + 2.338 2.306 -0.108
ENSG00000119335 E025 210.1479098 1.360812e-04 3.512187e-01 6.415865e-01 9 128693638 128693808 171 + 2.333 2.314 -0.062
ENSG00000119335 E026 237.6933685 1.028261e-04 7.947711e-02 2.891785e-01 9 128693896 128694042 147 + 2.393 2.360 -0.110
ENSG00000119335 E027 4.3246792 4.257176e-03 4.394067e-02 2.048134e-01 9 128694043 128694640 598 + 0.592 0.838 1.015
ENSG00000119335 E028 82.3206956 1.851006e-04 5.410454e-01 7.887541e-01 9 128694641 128694643 3 + 1.929 1.910 -0.066
ENSG00000119335 E029 899.4215447 4.895612e-05 6.239374e-15 1.050395e-12 9 128694644 128696400 1757 + 2.922 2.987 0.217

Help

Please Click HERE to learn more details about the results from DEXseq.