ENSG00000119559

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000427685 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 1.489573 0.1458884 2.4399538 0.1458884 0.6765420 3.9741695 0.06954167 0.006825 0.113775 0.106950 0.04109616 0.00021499 FALSE TRUE
ENST00000585675 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 3.798353 4.5217874 4.1086525 0.6156674 0.6816656 -0.1379078 0.16385000 0.197575 0.179175 -0.018400 0.97813082 0.00021499 FALSE TRUE
ENST00000586564 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 2.379488 2.0353547 1.7880215 1.3520492 1.7880215 -0.1859407 0.09206667 0.095625 0.075900 -0.019725 0.83286760 0.00021499 FALSE TRUE
ENST00000588427 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 5.583406 6.5962548 5.6951467 1.1606830 0.5615559 -0.2115686 0.22992500 0.281550 0.247500 -0.034050 0.94189790 0.00021499 FALSE FALSE
ENST00000589421 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding retained_intron 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 1.294689 2.2735036 0.0000000 0.3462507 0.0000000 -7.8351053 0.04759167 0.099475 0.000000 -0.099475 0.00021499 0.00021499 FALSE TRUE
ENST00000592486 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding retained_intron 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 1.773899 2.4010698 1.0873673 0.3837769 0.2717610 -1.1356269 0.07497500 0.105100 0.048925 -0.056175 0.61032265 0.00021499 FALSE FALSE
ENST00000592605 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding_CDS_not_defined 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 3.140809 2.3535369 0.6697274 2.3535369 0.6697274 -1.7979192 0.09798333 0.080175 0.028425 -0.051750 1.00000000 0.00021499   FALSE
ENST00000592872 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 2.822554 2.3374119 3.4067522 1.3846096 2.3154820 0.5415546 0.11149167 0.088225 0.151200 0.062975 1.00000000 0.00021499 FALSE TRUE
ENST00000651077 ENSG00000119559 No_inf pgKDN_inf C19orf25 protein_coding protein_coding 25.23255 23.78009 23.07433 1.924283 2.198308 -0.04344669 1.238706 0.0000000 2.2404303 0.0000000 1.2945332 7.8140571 0.04956667 0.000000 0.097025 0.097025 0.45937743 0.00021499 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000119559 E001 16.1103259 0.0068310429 6.934021e-01 0.8747444777 19 1461143 1461824 682 - 1.210 1.247 0.133
ENSG00000119559 E002 0.0000000       19 1473201 1473203 3 -      
ENSG00000119559 E003 21.4940905 0.0008347127 2.325417e-02 0.1392456904 19 1473204 1474154 951 - 1.263 1.409 0.511
ENSG00000119559 E004 1.9896883 0.0636199263 2.688779e-01 0.5624941732 19 1474155 1474167 13 - 0.364 0.546 0.938
ENSG00000119559 E005 1.9898143 0.0083673175 2.315999e-01 0.5202871725 19 1474168 1474171 4 - 0.364 0.546 0.938
ENSG00000119559 E006 2.1068183 0.0076141429 3.728632e-01 0.6605887397 19 1474172 1474173 2 - 0.411 0.546 0.675
ENSG00000119559 E007 2.1068183 0.0076141429 3.728632e-01 0.6605887397 19 1474174 1474175 2 - 0.411 0.546 0.675
ENSG00000119559 E008 2.4614459 0.0139992262 9.261562e-01 0.9778077260 19 1474176 1474185 10 - 0.526 0.546 0.090
ENSG00000119559 E009 20.6073581 0.0007147540 9.201642e-03 0.0761167745 19 1474186 1474478 293 - 1.409 1.258 -0.525
ENSG00000119559 E010 55.6791527 0.0003355614 2.683572e-05 0.0007900424 19 1474479 1475054 576 - 1.820 1.686 -0.453
ENSG00000119559 E011 12.9695235 0.0011445237 3.043593e-01 0.5977682413 19 1475055 1475145 91 - 1.181 1.110 -0.254
ENSG00000119559 E012 9.2347153 0.0393590954 7.045205e-01 0.8798797735 19 1475146 1475239 94 - 0.973 1.034 0.227
ENSG00000119559 E013 4.4643098 0.0033645293 1.216941e-01 0.3692517055 19 1475240 1475258 19 - 0.618 0.812 0.801
ENSG00000119559 E014 5.2693510 0.0061869274 7.187990e-01 0.8868006801 19 1475259 1475514 256 - 0.813 0.780 -0.132
ENSG00000119559 E015 4.1114726 0.0036147120 2.709109e-02 0.1529892302 19 1475515 1475903 389 - 0.526 0.812 1.216
ENSG00000119559 E016 3.1220167 0.0045220054 2.316050e-02 0.1388240216 19 1475904 1476294 391 - 0.411 0.728 1.464
ENSG00000119559 E017 2.6414494 0.0065172810 2.078006e-03 0.0263149054 19 1476295 1476485 191 - 0.252 0.709 2.386
ENSG00000119559 E018 0.4979097 0.0158253691 4.010237e-01   19 1478413 1478434 22 - 0.101 0.227 1.386
ENSG00000119559 E019 1.6304006 0.0753830372 3.446099e-02 0.1773141318 19 1478435 1478580 146 - 0.183 0.546 2.260
ENSG00000119559 E020 1.2700440 0.0101953107 1.062057e-03 0.0156934217 19 1478581 1478653 73 - 0.000 0.516 12.662
ENSG00000119559 E021 1.8508730 0.0077682126 6.393623e-01 0.8466348473 19 1478654 1478773 120 - 0.411 0.485 0.386
ENSG00000119559 E022 9.9265735 0.0015547699 7.038610e-01 0.8795652703 19 1478774 1478905 132 - 1.050 1.025 -0.092
ENSG00000119559 E023 0.6258335 0.0152893476 2.326041e-01 0.5213045896 19 1478906 1479113 208 - 0.101 0.282 1.801
ENSG00000119559 E024 0.3709916 0.0167088327 6.856851e-01   19 1479114 1479139 26 - 0.101 0.163 0.801
ENSG00000119559 E025 0.1268540 0.0123762037 6.297196e-01   19 1479140 1479162 23 - 0.000 0.089 9.670
ENSG00000119559 E026 3.4227699 0.0567508703 7.027816e-01 0.8791127483 19 1479163 1479219 57 - 0.669 0.623 -0.199

Help

Please Click HERE to learn more details about the results from DEXseq.