ENSG00000119596

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000325680 ENSG00000119596 No_inf pgKDN_inf YLPM1 protein_coding protein_coding 22.70078 26.02135 20.7924 1.020024 0.597657 -0.3235004 6.928220 4.8679341 8.2141739 0.8036624 0.48500798 0.75360049 0.31988333 0.184850 0.398150 0.213300 0.09067196 0.02018474 FALSE TRUE
ENST00000546901 ENSG00000119596 No_inf pgKDN_inf YLPM1 protein_coding protein_coding_CDS_not_defined 22.70078 26.02135 20.7924 1.020024 0.597657 -0.3235004 2.386697 4.2143011 1.0450002 0.8079411 0.52126462 -2.00146934 0.10133333 0.163025 0.049500 -0.113525 0.31069638 0.02018474 FALSE FALSE
ENST00000547879 ENSG00000119596 No_inf pgKDN_inf YLPM1 protein_coding protein_coding 22.70078 26.02135 20.7924 1.020024 0.597657 -0.3235004 3.949808 4.0756638 4.2653950 0.3225393 0.47314739 0.06548725 0.17590000 0.156275 0.204400 0.048125 0.82709573 0.02018474 FALSE TRUE
ENST00000549293 ENSG00000119596 No_inf pgKDN_inf YLPM1 protein_coding nonsense_mediated_decay 22.70078 26.02135 20.7924 1.020024 0.597657 -0.3235004 3.557632 4.1809168 3.8377440 0.6743862 0.27591549 -0.12325307 0.15694167 0.164050 0.184775 0.020725 0.89389086 0.02018474 TRUE TRUE
ENST00000550021 ENSG00000119596 No_inf pgKDN_inf YLPM1 protein_coding retained_intron 22.70078 26.02135 20.7924 1.020024 0.597657 -0.3235004 3.105972 6.1098359 0.6255455 1.2425408 0.36448832 -3.26742562 0.12077500 0.231675 0.029450 -0.202225 0.02018474 0.02018474   FALSE
ENST00000554107 ENSG00000119596 No_inf pgKDN_inf YLPM1 protein_coding protein_coding 22.70078 26.02135 20.7924 1.020024 0.597657 -0.3235004 1.199871 0.8883089 1.4748056 0.1065142 0.08333221 0.72499054 0.05303333 0.034050 0.070925 0.036875 0.56308289 0.02018474 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000119596 E001 0.3727544 0.0167282029 5.110317e-01   14 74763316 74763365 50 + 0.090 0.182 1.183
ENSG00000119596 E002 24.1591884 0.0005903991 5.709599e-01 0.807236493 14 74763366 74764362 997 + 1.416 1.384 -0.110
ENSG00000119596 E003 11.6827728 0.0011945567 3.005943e-01 0.593442333 14 74778447 74778683 237 + 1.142 1.058 -0.303
ENSG00000119596 E004 9.6864150 0.0014626511 1.753619e-02 0.116177012 14 74780405 74780584 180 + 1.120 0.905 -0.790
ENSG00000119596 E005 5.2362442 0.0030145666 5.073662e-01 0.765811465 14 74781334 74781384 51 + 0.829 0.755 -0.291
ENSG00000119596 E006 38.8334068 0.0004101136 9.238573e-02 0.315615937 14 74781385 74782325 941 + 1.636 1.559 -0.264
ENSG00000119596 E007 118.6581899 0.0001788794 3.205091e-01 0.613425764 14 74797580 74799697 2118 + 2.089 2.065 -0.079
ENSG00000119596 E008 18.2024831 0.0009298056 8.651870e-01 0.953434576 14 74802556 74802676 121 + 1.277 1.290 0.047
ENSG00000119596 E009 23.4062834 0.0009412553 2.314944e-01 0.520117623 14 74809380 74809631 252 + 1.350 1.424 0.258
ENSG00000119596 E010 18.5671769 0.0048589383 9.509794e-01 0.987547836 14 74809632 74809797 166 + 1.292 1.290 -0.007
ENSG00000119596 E011 16.1894782 0.0009516658 1.968660e-01 0.477883292 14 74809910 74810002 93 + 1.277 1.186 -0.321
ENSG00000119596 E012 28.1581621 0.0005666592 2.612019e-01 0.553891086 14 74810225 74810420 196 + 1.493 1.433 -0.207
ENSG00000119596 E013 23.1176298 0.0006626978 8.534879e-01 0.948321582 14 74811620 74811738 119 + 1.376 1.389 0.045
ENSG00000119596 E014 24.5928343 0.0020725418 1.360518e-01 0.392228939 14 74812628 74812782 155 + 1.449 1.360 -0.308
ENSG00000119596 E015 17.2848217 0.0010131835 1.980949e-01 0.479494265 14 74816203 74816265 63 + 1.303 1.214 -0.310
ENSG00000119596 E016 23.1146575 0.0006165291 7.405536e-01 0.897148225 14 74816571 74816690 120 + 1.371 1.393 0.076
ENSG00000119596 E017 34.9742498 0.0084158278 7.851946e-01 0.917174189 14 74816931 74817107 177 + 1.547 1.565 0.061
ENSG00000119596 E018 17.9752324 0.0007956189 3.898265e-02 0.191187624 14 74817194 74817237 44 + 1.341 1.200 -0.492
ENSG00000119596 E019 18.6521657 0.0050423665 4.752219e-01 0.741826194 14 74817238 74817277 40 + 1.317 1.266 -0.177
ENSG00000119596 E020 22.4256173 0.0007203993 2.754490e-01 0.569001686 14 74818231 74818308 78 + 1.400 1.334 -0.228
ENSG00000119596 E021 10.1502932 0.0026923571 9.892901e-01 1.000000000 14 74818309 74818314 6 + 1.046 1.048 0.009
ENSG00000119596 E022 25.6477612 0.0048872694 6.682123e-01 0.861917591 14 74821057 74821137 81 + 1.438 1.411 -0.093
ENSG00000119596 E023 9.1359812 0.0042921658 1.097325e-02 0.085487653 14 74821138 74822115 978 + 0.871 1.114 0.899
ENSG00000119596 E024 2.8917923 0.0053156028 6.857999e-05 0.001725874 14 74823978 74824255 278 + 0.228 0.793 2.920
ENSG00000119596 E025 21.0962822 0.0008181879 2.092939e-01 0.493530206 14 74824256 74824307 52 + 1.303 1.384 0.283
ENSG00000119596 E026 7.7293225 0.0308399219 1.204398e-04 0.002766603 14 74827372 74828032 661 + 0.648 1.122 1.831
ENSG00000119596 E027 29.6549799 0.0009870897 2.296531e-01 0.518247380 14 74829213 74829343 131 + 1.452 1.519 0.230
ENSG00000119596 E028 2.5937675 0.0054863585 1.746671e-01 0.448494701 14 74834898 74835264 367 + 0.453 0.642 0.883
ENSG00000119596 E029 41.8335800 0.0004001835 2.877999e-02 0.158965902 14 74835265 74835447 183 + 1.580 1.681 0.344
ENSG00000119596 E030 49.7432411 0.0002929535 4.603790e-03 0.046708205 14 74835775 74837318 1544 + 1.643 1.762 0.404
ENSG00000119596 E031 0.3804973 0.0158514834 8.175033e-02   14 74844024 74844260 237 + 0.000 0.251 10.285
ENSG00000119596 E032 20.6750273 0.0006990539 9.524473e-02 0.321278948 14 74855217 74859435 4219 + 1.384 1.279 -0.367

Help

Please Click HERE to learn more details about the results from DEXseq.