ENSG00000119777

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000238788 ENSG00000119777 No_inf pgKDN_inf TMEM214 protein_coding protein_coding 42.93557 35.82677 45.09418 1.308008 1.140324 0.3318206 21.951327 12.663249 27.9928882 0.9320552 0.6726708 1.14378917 0.50140833 0.356000 0.62160 0.265600 0.001895207 0.000412224 FALSE TRUE
ENST00000460665 ENSG00000119777 No_inf pgKDN_inf TMEM214 protein_coding retained_intron 42.93557 35.82677 45.09418 1.308008 1.140324 0.3318206 2.929610 4.957255 0.9336451 0.6903509 0.2963814 -2.39613270 0.07355000 0.139200 0.02095 -0.118250 0.004850926 0.000412224   FALSE
ENST00000460904 ENSG00000119777 No_inf pgKDN_inf TMEM214 protein_coding retained_intron 42.93557 35.82677 45.09418 1.308008 1.140324 0.3318206 1.181244 2.068958 0.0000000 0.5313405 0.0000000 -7.69971699 0.03008333 0.059075 0.00000 -0.059075 0.000412224 0.000412224 FALSE TRUE
ENST00000495312 ENSG00000119777 No_inf pgKDN_inf TMEM214 protein_coding retained_intron 42.93557 35.82677 45.09418 1.308008 1.140324 0.3318206 2.167763 2.636388 2.6102915 0.6804030 0.3452122 -0.01429738 0.05193333 0.071775 0.05770 -0.014075 0.939806443 0.000412224 FALSE TRUE
MSTRG.15967.8 ENSG00000119777 No_inf pgKDN_inf TMEM214 protein_coding   42.93557 35.82677 45.09418 1.308008 1.140324 0.3318206 9.772154 9.840002 9.0714604 0.9519252 1.0362329 -0.11719969 0.23060833 0.273350 0.20120 -0.072150 0.666570683 0.000412224 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000119777 E001 0.0000000       2 27032910 27032953 44 +      
ENSG00000119777 E002 0.1176306 0.0117300479 7.022927e-01   2 27032954 27032964 11 + 0.084 0.000 -8.948
ENSG00000119777 E003 0.1176306 0.0117300479 7.022927e-01   2 27032965 27032976 12 + 0.084 0.000 -11.569
ENSG00000119777 E004 9.0258795 0.0015685200 8.294577e-01 0.938244459 2 27032977 27033137 161 + 0.989 1.011 0.082
ENSG00000119777 E005 8.5090622 0.0016161175 5.739341e-01 0.809058043 2 27033138 27033166 29 + 0.998 0.947 -0.190
ENSG00000119777 E006 25.4702165 0.0006300457 6.675003e-02 0.260310630 2 27034067 27034266 200 + 1.465 1.360 -0.364
ENSG00000119777 E007 0.4914576 0.0157317456 7.897311e-01   2 27034267 27034609 343 + 0.154 0.193 0.395
ENSG00000119777 E008 18.8695423 0.0007689281 1.058767e-02 0.083401565 2 27035135 27035285 151 + 1.365 1.193 -0.605
ENSG00000119777 E009 3.4581372 0.0046717794 6.869787e-02 0.264683217 2 27035286 27035481 196 + 0.525 0.761 1.023
ENSG00000119777 E010 0.1265070 0.0122388173 4.098891e-01   2 27035520 27035553 34 + 0.000 0.107 11.306
ENSG00000119777 E011 0.8610636 0.0153519046 4.713044e-01 0.738697806 2 27035554 27035593 40 + 0.215 0.327 0.810
ENSG00000119777 E012 22.0797632 0.0006314268 1.000711e-01 0.330522740 2 27035594 27035728 135 + 1.404 1.303 -0.350
ENSG00000119777 E013 2.9728183 0.0047988128 2.303840e-02 0.138476908 2 27035729 27035969 241 + 0.433 0.740 1.395
ENSG00000119777 E014 15.6068427 0.0008881871 9.241805e-01 0.976951202 2 27035970 27036052 83 + 1.214 1.223 0.032
ENSG00000119777 E015 6.4963195 0.0021209626 2.700210e-01 0.563645054 2 27036487 27036490 4 + 0.816 0.933 0.449
ENSG00000119777 E016 10.6374909 0.0013567053 4.787354e-01 0.744719566 2 27036491 27036525 35 + 1.034 1.097 0.229
ENSG00000119777 E017 17.4860958 0.0007624140 3.104310e-01 0.603539356 2 27036526 27036592 67 + 1.231 1.303 0.254
ENSG00000119777 E018 24.1267439 0.0006371955 9.794072e-01 0.997536338 2 27036705 27036786 82 + 1.396 1.400 0.014
ENSG00000119777 E019 27.1464707 0.0005914198 7.178531e-01 0.886507264 2 27037077 27037178 102 + 1.455 1.437 -0.062
ENSG00000119777 E020 32.9037483 0.0004724509 7.202833e-02 0.272157490 2 27037561 27037702 142 + 1.567 1.476 -0.311
ENSG00000119777 E021 0.8886039 0.0126541869 1.519717e-03 0.020692862 2 27037703 27037789 87 + 0.000 0.472 13.918
ENSG00000119777 E022 0.8801093 0.4409039071 1.553972e-01 0.421302555 2 27037790 27037814 25 + 0.084 0.429 2.979
ENSG00000119777 E023 0.7453869 0.2399130059 3.168814e-01 0.609705329 2 27037815 27037874 60 + 0.154 0.327 1.394
ENSG00000119777 E024 0.6171781 0.0186020845 4.589163e-01 0.730696456 2 27037875 27037892 18 + 0.154 0.265 0.980
ENSG00000119777 E025 2.0515447 0.0373020521 2.723583e-01 0.566067902 2 27038032 27038145 114 + 0.552 0.381 -0.868
ENSG00000119777 E026 20.9222909 0.0007216024 3.928939e-01 0.677891443 2 27038146 27038237 92 + 1.361 1.309 -0.183
ENSG00000119777 E027 12.3682261 0.0013077092 1.004894e-01 0.331013177 2 27038484 27038532 49 + 1.179 1.045 -0.480
ENSG00000119777 E028 10.2294811 0.0217794042 6.766967e-01 0.865995780 2 27038702 27038709 8 + 1.067 1.023 -0.162
ENSG00000119777 E029 21.9599785 0.0007106746 7.645486e-01 0.908432955 2 27038710 27038815 106 + 1.349 1.370 0.073
ENSG00000119777 E030 24.1704278 0.0090945627 6.376790e-01 0.845466379 2 27039047 27039164 118 + 1.381 1.419 0.132
ENSG00000119777 E031 3.2497214 0.0080335174 6.359566e-04 0.010508481 2 27039361 27039740 380 + 0.358 0.820 2.132
ENSG00000119777 E032 21.7334855 0.0006303319 1.452064e-01 0.405507211 2 27039741 27039837 97 + 1.393 1.303 -0.312
ENSG00000119777 E033 1.3783899 0.0112978207 9.564530e-03 0.078100433 2 27039838 27039919 82 + 0.154 0.547 2.565
ENSG00000119777 E034 2.2668342 0.0067741727 6.081497e-05 0.001558933 2 27039920 27040029 110 + 0.154 0.740 3.395
ENSG00000119777 E035 38.2729909 0.0003649400 9.931574e-01 1.000000000 2 27040030 27040198 169 + 1.591 1.593 0.007
ENSG00000119777 E036 0.1176306 0.0117300479 7.022927e-01   2 27040199 27040344 146 + 0.084 0.000 -11.569
ENSG00000119777 E037 36.5272440 0.0003780938 6.348724e-01 0.844005377 2 27040345 27040496 152 + 1.581 1.561 -0.071
ENSG00000119777 E038 54.2512564 0.0002725089 9.091498e-01 0.971194454 2 27040711 27040954 244 + 1.737 1.744 0.023
ENSG00000119777 E039 94.2665412 0.0001674690 6.428929e-01 0.848652659 2 27040955 27041243 289 + 1.969 1.985 0.054
ENSG00000119777 E040 93.4087387 0.0001954226 9.740392e-02 0.325186205 2 27041244 27041694 451 + 1.949 2.000 0.172

Help

Please Click HERE to learn more details about the results from DEXseq.