ENSG00000120029

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000311122 ENSG00000120029 No_inf pgKDN_inf ARMH3 protein_coding protein_coding 7.830405 8.538845 7.814461 0.9922321 0.6196493 -0.1277381 0.7143425 0.7153789 0.5868287 0.7153789 0.5868287 -0.2814179 0.07065833 0.062775 0.060775 -0.00200 1.00000000 0.04325667 FALSE TRUE
ENST00000370033 ENSG00000120029 No_inf pgKDN_inf ARMH3 protein_coding protein_coding 7.830405 8.538845 7.814461 0.9922321 0.6196493 -0.1277381 4.3529458 2.9178385 5.6965278 0.3084049 0.5411458 0.9627772 0.58858333 0.359450 0.746400 0.38695 0.23506882 0.04325667 FALSE TRUE
ENST00000495001 ENSG00000120029 No_inf pgKDN_inf ARMH3 protein_coding protein_coding_CDS_not_defined 7.830405 8.538845 7.814461 0.9922321 0.6196493 -0.1277381 0.4379440 0.0000000 0.0000000 0.0000000 0.0000000 0.0000000 0.05749167 0.000000 0.000000 0.00000   0.04325667 FALSE FALSE
MSTRG.3910.1 ENSG00000120029 No_inf pgKDN_inf ARMH3 protein_coding   7.830405 8.538845 7.814461 0.9922321 0.6196493 -0.1277381 2.0297012 4.7615992 0.7887160 0.5437007 0.4701029 -2.5787184 0.24928333 0.560575 0.108075 -0.45250 0.04325667 0.04325667 FALSE TRUE
MSTRG.3910.4 ENSG00000120029 No_inf pgKDN_inf ARMH3 protein_coding   7.830405 8.538845 7.814461 0.9922321 0.6196493 -0.1277381 0.1717187 0.0000000 0.5151562 0.0000000 0.5151562 5.7146748 0.01778333 0.000000 0.053350 0.05335 0.83335466 0.04325667 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000120029 E001 33.0980244 0.0004546325 0.000109439 0.002561843 10 101845599 101846492 894 - 1.427 1.608 0.620
ENSG00000120029 E002 49.0961701 0.0003233174 0.006704683 0.061217264 10 101846493 101847620 1128 - 1.646 1.742 0.326
ENSG00000120029 E003 5.8480497 0.0026674898 0.330112851 0.622615278 10 101849776 101849892 117 - 0.889 0.781 -0.422
ENSG00000120029 E004 7.1758951 0.0020685235 0.118412421 0.363509222 10 101889412 101889490 79 - 0.989 0.830 -0.604
ENSG00000120029 E005 0.0000000       10 101889491 101889736 246 -      
ENSG00000120029 E006 6.7299733 0.0046662250 0.807699104 0.929034836 10 101939863 101939938 76 - 0.903 0.873 -0.112
ENSG00000120029 E007 7.9789650 0.0020131372 0.614374116 0.832470445 10 101956597 101956723 127 - 0.929 0.973 0.163
ENSG00000120029 E008 2.8277822 0.0175431107 0.589731151 0.818343579 10 101957650 101957675 26 - 0.544 0.615 0.319
ENSG00000120029 E009 2.7307267 0.0051318734 0.100213767 0.330780933 10 101957676 101957732 57 - 0.439 0.662 1.040
ENSG00000120029 E010 4.6721622 0.0065292706 0.590252564 0.818645866 10 101975212 101975300 89 - 0.720 0.781 0.245
ENSG00000120029 E011 3.6617421 0.0040640792 0.655139306 0.855371162 10 101990551 101990611 61 - 0.699 0.639 -0.252
ENSG00000120029 E012 4.8775553 0.0036001552 0.466400285 0.735108767 10 101991969 101992038 70 - 0.813 0.726 -0.349
ENSG00000120029 E013 4.1653423 0.0036161900 0.926898196 0.978208146 10 101993538 101993603 66 - 0.720 0.705 -0.060
ENSG00000120029 E014 3.3301795 0.0049741490 0.379257282 0.666108578 10 101995297 101995355 59 - 0.574 0.684 0.481
ENSG00000120029 E015 4.2630550 0.0052798938 0.355962711 0.645739897 10 102001971 102002072 102 - 0.778 0.662 -0.475
ENSG00000120029 E016 0.2536433 0.0160385070 0.253083567   10 102004366 102004398 33 - 0.000 0.170 10.525
ENSG00000120029 E017 4.4803114 0.0105167778 0.064547699 0.256035568 10 102006540 102006633 94 - 0.845 0.615 -0.944
ENSG00000120029 E018 3.4098641 0.0089945343 0.412768739 0.693784207 10 102009374 102009449 76 - 0.699 0.588 -0.475
ENSG00000120029 E019 2.5537419 0.0062273983 0.473943088 0.740789512 10 102009977 102010023 47 - 0.602 0.499 -0.475
ENSG00000120029 E020 2.9208923 0.0048549648 0.375509211 0.663016958 10 102011723 102011783 61 - 0.653 0.531 -0.545
ENSG00000120029 E021 2.5509069 0.0062604742 0.248942066 0.539778138 10 102012833 102012876 44 - 0.628 0.465 -0.760
ENSG00000120029 E022 2.6525137 0.0056831755 0.026055320 0.149274235 10 102013968 102014024 57 - 0.699 0.387 -1.475
ENSG00000120029 E023 4.0941307 0.0429254577 0.011557918 0.088495229 10 102023477 102023563 87 - 0.860 0.499 -1.534
ENSG00000120029 E024 3.2505979 0.1210715533 0.049328472 0.219005745 10 102023675 102023749 75 - 0.778 0.428 -1.574
ENSG00000120029 E025 2.7786155 0.0053203272 0.049850314 0.220270917 10 102025156 102025248 93 - 0.699 0.428 -1.253
ENSG00000120029 E026 0.1176306 0.0117849796 0.521824642   10 102025387 102025427 41 - 0.097 0.000 -10.322
ENSG00000120029 E027 0.2447669 0.0163245302 0.980772031   10 102029448 102029637 190 - 0.097 0.093 -0.060
ENSG00000120029 E028 3.5379411 0.0044016714 0.524155010 0.777282824 10 102029638 102029745 108 - 0.699 0.615 -0.359
ENSG00000120029 E029 0.1265070 0.0123671907 0.554713802   10 102032933 102033025 93 - 0.000 0.093 9.586
ENSG00000120029 E030 5.0240836 0.0029130626 0.953096460 0.988433606 10 102033026 102033172 147 - 0.778 0.781 0.011
ENSG00000120029 E031 1.8413968 0.0478022632 0.858047426 0.950466830 10 102033283 102033339 57 - 0.439 0.465 0.133
ENSG00000120029 E032 0.0000000       10 102033340 102033438 99 -      
ENSG00000120029 E033 3.1518317 0.1145283518 0.171491018 0.444035939 10 102040013 102040125 113 - 0.720 0.499 -0.978
ENSG00000120029 E034 1.6879802 0.0077833729 0.094405731 0.319773342 10 102056085 102056193 109 - 0.544 0.292 -1.382

Help

Please Click HERE to learn more details about the results from DEXseq.