ENSG00000120656

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000373824 ENSG00000120656 No_inf pgKDN_inf TAF12 protein_coding protein_coding 30.17444 25.04449 34.18122 1.294806 1.949485 0.4485568 8.724374 8.9167546 8.640023 0.5496467 1.615726 -0.04543176 0.2995833 0.360875 0.261050 -0.099825 0.705429563 0.004141155 FALSE TRUE
ENST00000685312 ENSG00000120656 No_inf pgKDN_inf TAF12 protein_coding protein_coding 30.17444 25.04449 34.18122 1.294806 1.949485 0.4485568 10.711497 13.2077220 7.565743 1.7287371 4.669570 -0.80301419 0.3702417 0.521350 0.229825 -0.291525 0.429796328 0.004141155 FALSE TRUE
ENST00000689843 ENSG00000120656 No_inf pgKDN_inf TAF12 protein_coding protein_coding 30.17444 25.04449 34.18122 1.294806 1.949485 0.4485568 5.333446 0.4274399 10.378054 0.4274399 3.379774 4.56969679 0.1640083 0.015250 0.298700 0.283450 0.004141155 0.004141155 FALSE TRUE
ENST00000691050 ENSG00000120656 No_inf pgKDN_inf TAF12 protein_coding protein_coding 30.17444 25.04449 34.18122 1.294806 1.949485 0.4485568 2.913004 0.0000000 6.255289 0.0000000 4.034843 9.29123718 0.0837750 0.000000 0.171725 0.171725 0.518181727 0.004141155   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000120656 E001 0.0000000       1 28587829 28587836 8 -      
ENSG00000120656 E002 0.0000000       1 28587837 28587860 24 -      
ENSG00000120656 E003 0.6142844 0.2213062937 0.597315212 0.82321252 1 28587861 28588119 259 - 0.165 0.250 0.752
ENSG00000120656 E004 1.1248454 0.0110805110 0.065141113 0.25702837 1 28588120 28588494 375 - 0.165 0.449 1.973
ENSG00000120656 E005 2.3671956 0.0062443106 0.021353509 0.13234661 1 28588495 28589322 828 - 0.334 0.666 1.651
ENSG00000120656 E006 0.8605594 0.0175088770 0.611174878 0.83087050 1 28589323 28589742 420 - 0.229 0.309 0.581
ENSG00000120656 E007 0.1265070 0.0124319416 0.485937816   1 28589743 28589774 32 - 0.000 0.100 11.926
ENSG00000120656 E008 0.1265070 0.0124319416 0.485937816   1 28589775 28589787 13 - 0.000 0.100 11.926
ENSG00000120656 E009 0.2536433 0.0161779462 0.209261517   1 28589788 28590201 414 - 0.000 0.181 12.843
ENSG00000120656 E010 0.2438580 0.0162313159 0.937468962   1 28590277 28590386 110 - 0.090 0.100 0.166
ENSG00000120656 E011 0.0000000       1 28596497 28596618 122 -      
ENSG00000120656 E012 0.2533610 0.0160469743 0.209503570   1 28602850 28603095 246 - 0.000 0.181 12.844
ENSG00000120656 E013 1.1041324 0.0692738916 0.654986914 0.85529052 1 28603096 28603100 5 - 0.284 0.361 0.488
ENSG00000120656 E014 9.1501136 0.0093661476 0.723052958 0.88867519 1 28603101 28603226 126 - 1.020 0.992 -0.104
ENSG00000120656 E015 6.8336575 0.0022832240 0.669760083 0.86275861 1 28603227 28603233 7 - 0.912 0.874 -0.145
ENSG00000120656 E016 25.9517213 0.0006050644 0.146597219 0.40767396 1 28603234 28603365 132 - 1.465 1.391 -0.257
ENSG00000120656 E017 50.1945804 0.0003217064 0.653979991 0.85472064 1 28603366 28603574 209 - 1.715 1.703 -0.038
ENSG00000120656 E018 0.2458395 0.0163849302 0.937496688   1 28603575 28604026 452 - 0.090 0.100 0.166
ENSG00000120656 E019 0.7341148 0.0379811469 0.900842985 0.96792704 1 28604027 28605371 1345 - 0.229 0.250 0.166
ENSG00000120656 E020 30.4286229 0.0006050219 0.091367300 0.31396712 1 28605372 28605460 89 - 1.535 1.455 -0.276
ENSG00000120656 E021 26.7858990 0.0005716250 0.139909371 0.39787555 1 28613247 28613361 115 - 1.479 1.404 -0.257
ENSG00000120656 E022 0.7611206 0.0133096318 0.006674636 0.06102556 1 28613362 28615605 2244 - 0.000 0.407 14.241
ENSG00000120656 E023 14.8870018 0.0105292916 0.606013584 0.82843747 1 28617953 28617986 34 - 1.217 1.184 -0.119
ENSG00000120656 E024 16.0514330 0.0009858097 0.499169963 0.75939952 1 28617987 28618030 44 - 1.205 1.258 0.188
ENSG00000120656 E025 43.4313279 0.0004436896 0.050711592 0.22269003 1 28621914 28622165 252 - 1.603 1.690 0.296
ENSG00000120656 E026 0.0000000       1 28622166 28622233 68 -      
ENSG00000120656 E027 0.1268540 0.0122887298 0.486250784   1 28623942 28623945 4 - 0.000 0.100 11.927
ENSG00000120656 E028 0.4902590 0.0157786142 0.920350268   1 28623946 28624030 85 - 0.165 0.181 0.166
ENSG00000120656 E029 1.1149278 0.0119890660 0.250985178 0.54213763 1 28642655 28642921 267 - 0.229 0.407 1.166
ENSG00000120656 E030 0.4821692 0.0284963045 0.373275566   1 28642922 28642991 70 - 0.229 0.100 -1.419
ENSG00000120656 E031 11.9086341 0.0103325779 0.352754961 0.64277736 1 28642992 28643115 124 - 1.066 1.153 0.315
ENSG00000120656 E032 0.0000000       1 28648205 28648291 87 -      

Help

Please Click HERE to learn more details about the results from DEXseq.