ENSG00000123159

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000393028 ENSG00000123159 No_inf pgKDN_inf GIPC1 protein_coding protein_coding 32.61241 30.70625 32.05245 0.8550524 1.754596 0.06188252 9.892590 13.2674356 7.130622 1.6634147 4.306620 -0.8948548 0.30096667 0.436650 0.208550 -0.228100 0.45999482 0.01326411 FALSE TRUE
ENST00000393033 ENSG00000123159 No_inf pgKDN_inf GIPC1 protein_coding protein_coding 32.61241 30.70625 32.05245 0.8550524 1.754596 0.06188252 13.080634 11.4479298 14.317549 0.6241309 1.134221 0.3224454 0.40710000 0.374750 0.452625 0.077875 0.81211573 0.01326411 FALSE TRUE
ENST00000586027 ENSG00000123159 No_inf pgKDN_inf GIPC1 protein_coding protein_coding 32.61241 30.70625 32.05245 0.8550524 1.754596 0.06188252 2.477269 0.3267643 4.321133 0.1889523 1.578369 3.6849332 0.07493333 0.010825 0.129225 0.118400 0.01326411 0.01326411 FALSE TRUE
MSTRG.14663.4 ENSG00000123159 No_inf pgKDN_inf GIPC1 protein_coding   32.61241 30.70625 32.05245 0.8550524 1.754596 0.06188252 2.523417 0.6218835 5.371821 0.6218835 2.743840 3.0903639 0.07998333 0.020825 0.180625 0.159800 0.36774850 0.01326411 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000123159 E001 0.0000000       19 14477760 14477761 2 -      
ENSG00000123159 E002 0.1170040 0.0116555618 0.5420194989   19 14477762 14477763 2 - 0.094 0.000 -9.629
ENSG00000123159 E003 23.1643237 0.0101593498 0.0426151663 0.201208647 19 14477764 14478003 240 - 1.300 1.449 0.519
ENSG00000123159 E004 49.3946158 0.0005989647 0.0609677632 0.247888077 19 14478004 14478245 242 - 1.660 1.739 0.268
ENSG00000123159 E005 14.6070159 0.0009943000 0.3786487495 0.665606413 19 14478246 14478255 10 - 1.157 1.225 0.242
ENSG00000123159 E006 72.9517696 0.0002107648 0.2812725691 0.574561782 19 14478256 14478567 312 - 1.849 1.887 0.126
ENSG00000123159 E007 22.4560705 0.0029764979 0.2154789992 0.501302503 19 14478684 14478765 82 - 1.407 1.332 -0.259
ENSG00000123159 E008 21.6690124 0.0008278407 0.0382754330 0.188887108 19 14479412 14479524 113 - 1.415 1.290 -0.434
ENSG00000123159 E009 0.2346346 0.0155241764 0.2452757836   19 14479525 14479817 293 - 0.172 0.000 -12.955
ENSG00000123159 E010 0.6338583 0.0148981896 0.0199646938 0.126888498 19 14479818 14480304 487 - 0.000 0.349 13.281
ENSG00000123159 E011 8.9808751 0.0026147786 0.0711212130 0.270225537 19 14480305 14480305 1 - 1.076 0.912 -0.610
ENSG00000123159 E012 33.7283218 0.0006928780 0.4302172576 0.708178266 19 14480306 14480485 180 - 1.559 1.523 -0.123
ENSG00000123159 E013 0.3731018 0.0168283992 0.5785893787   19 14480486 14480592 107 - 0.094 0.174 1.024
ENSG00000123159 E014 37.3920491 0.0013488639 0.4672271183 0.735747192 19 14480593 14480778 186 - 1.564 1.602 0.128
ENSG00000123159 E015 0.9889240 0.0121005024 0.4736657006 0.740676869 19 14480779 14480896 118 - 0.238 0.349 0.761
ENSG00000123159 E016 2.8580826 0.0234909073 0.0707662968 0.269430577 19 14481747 14482688 942 - 0.431 0.694 1.216
ENSG00000123159 E017 19.1988479 0.0008116108 0.6106780490 0.830679470 19 14482689 14482855 167 - 1.320 1.290 -0.105
ENSG00000123159 E018 3.6836157 0.0801045141 0.7788893964 0.914998379 19 14482856 14482856 1 - 0.643 0.695 0.217
ENSG00000123159 E019 15.7209138 0.0052312950 0.2366136663 0.525536487 19 14482857 14483006 150 - 1.267 1.178 -0.313
ENSG00000123159 E020 2.3577185 0.0067555761 0.1046486797 0.338127924 19 14483007 14483330 324 - 0.390 0.624 1.139
ENSG00000123159 E021 0.7521823 0.0445715715 0.0979833457 0.326393291 19 14483331 14483463 133 - 0.094 0.349 2.346
ENSG00000123159 E022 0.5070043 0.0158298275 0.0442244276 0.205673905 19 14483489 14483579 91 - 0.000 0.298 12.988
ENSG00000123159 E023 9.6505570 0.0014818149 0.0003352249 0.006363963 19 14491656 14491743 88 - 1.164 0.840 -1.199
ENSG00000123159 E024 3.8735941 0.0226871272 0.1013848463 0.332467337 19 14492857 14492912 56 - 0.785 0.570 -0.909
ENSG00000123159 E025 5.4609961 0.0024698715 0.1078067242 0.344253870 19 14496037 14496149 113 - 0.892 0.716 -0.696

Help

Please Click HERE to learn more details about the results from DEXseq.