ENSG00000123329

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000550440 ENSG00000123329 No_inf pgKDN_inf ARHGAP9 protein_coding retained_intron 119.4394 187.243 85.08583 3.085843 1.191724 -1.137828 52.946121 83.40859 39.697313 3.078396 2.1069537 -1.070964 0.44268333 0.446000 0.466750 0.020750 8.894646e-01 1.749968e-28 FALSE FALSE
ENST00000551452 ENSG00000123329 No_inf pgKDN_inf ARHGAP9 protein_coding protein_coding 119.4394 187.243 85.08583 3.085843 1.191724 -1.137828 7.097559 12.94744 2.148202 3.173086 0.9137061 -2.585879 0.05470833 0.068600 0.025125 -0.043475 4.406264e-01 1.749968e-28 FALSE FALSE
MSTRG.6727.1 ENSG00000123329 No_inf pgKDN_inf ARHGAP9 protein_coding   119.4394 187.243 85.08583 3.085843 1.191724 -1.137828 11.624118 23.19746 2.548153 1.780710 1.5009322 -3.181414 0.08668333 0.124275 0.029875 -0.094400 1.489158e-01 1.749968e-28 FALSE TRUE
MSTRG.6727.2 ENSG00000123329 No_inf pgKDN_inf ARHGAP9 protein_coding   119.4394 187.243 85.08583 3.085843 1.191724 -1.137828 11.992844 0.00000 20.316175 0.000000 3.0087034 10.989123 0.14086667 0.000000 0.239075 0.239075 1.749968e-28 1.749968e-28 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000123329 E001 0.0000000       12 57472261 57472261 1 -      
ENSG00000123329 E002 0.0000000       12 57472262 57472263 2 -      
ENSG00000123329 E003 0.0000000       12 57472264 57472264 1 -      
ENSG00000123329 E004 0.0000000       12 57472265 57472265 1 -      
ENSG00000123329 E005 0.0000000       12 57472266 57472268 3 -      
ENSG00000123329 E006 0.3804973 0.0158155499 3.910243e-01   12 57472269 57472269 1 - 0.000 0.172 9.581
ENSG00000123329 E007 0.5070043 0.0157264079 2.340142e-01 5.230528e-01 12 57472270 57472270 1 - 0.000 0.217 12.333
ENSG00000123329 E008 1.1321763 0.0107972626 1.757059e-01 4.498492e-01 12 57472271 57472273 3 - 0.137 0.361 1.807
ENSG00000123329 E009 53.1999494 0.0002891873 2.708710e-01 5.645833e-01 12 57472274 57472476 203 - 1.726 1.678 -0.163
ENSG00000123329 E010 123.5492923 0.0001411444 5.039800e-01 7.633482e-01 12 57472477 57472675 199 - 2.039 2.059 0.065
ENSG00000123329 E011 52.9616317 0.0010039200 5.659690e-01 8.045379e-01 12 57472676 57472688 13 - 1.671 1.698 0.091
ENSG00000123329 E012 67.1668567 0.0002750710 3.302126e-01 6.227314e-01 12 57473603 57473691 89 - 1.763 1.803 0.132
ENSG00000123329 E013 41.6105179 0.0004069484 8.964855e-01 9.659631e-01 12 57473692 57473708 17 - 1.592 1.586 -0.022
ENSG00000123329 E014 135.0516476 0.0001546748 8.025157e-01 9.264424e-01 12 57474042 57474173 132 - 2.087 2.093 0.023
ENSG00000123329 E015 38.8623137 0.0005549415 1.393409e-01 3.969010e-01 12 57474174 57474176 3 - 1.501 1.581 0.271
ENSG00000123329 E016 3.2632524 0.0065892521 8.053618e-02 2.915194e-01 12 57474269 57474422 154 - 0.395 0.659 1.266
ENSG00000123329 E017 61.1001784 0.0003995319 1.719274e-01 4.446218e-01 12 57474423 57474451 29 - 1.790 1.734 -0.189
ENSG00000123329 E018 64.9350909 0.0002302741 7.800597e-01 9.152571e-01 12 57474452 57474474 23 - 1.785 1.774 -0.038
ENSG00000123329 E019 52.4016708 0.0002795367 1.065789e-01 3.419120e-01 12 57474475 57474476 2 - 1.735 1.664 -0.239
ENSG00000123329 E020 97.2327007 0.0001580953 1.427552e-02 1.015782e-01 12 57474626 57474703 78 - 2.004 1.926 -0.262
ENSG00000123329 E021 69.9118875 0.0002867655 1.576269e-01 4.242522e-01 12 57474875 57474968 94 - 1.846 1.793 -0.182
ENSG00000123329 E022 23.4201999 0.0150404657 6.084782e-01 8.294984e-01 12 57474969 57474973 5 - 1.379 1.334 -0.158
ENSG00000123329 E023 18.4290031 0.0008836373 2.074008e-04 4.313904e-03 12 57474974 57475290 317 - 1.011 1.317 1.093
ENSG00000123329 E024 37.1495231 0.0006687867 7.107696e-01 8.830833e-01 12 57475291 57475398 108 - 1.526 1.546 0.068
ENSG00000123329 E025 0.6088090 0.0203958135 1.777506e-01 4.524422e-01 12 57475399 57475411 13 - 0.324 0.122 -1.778
ENSG00000123329 E026 0.0000000       12 57475483 57475484 2 -      
ENSG00000123329 E027 0.0000000       12 57475485 57475615 131 -      
ENSG00000123329 E028 3.6101104 0.0078715219 7.437634e-01 8.986754e-01 12 57475776 57475832 57 - 0.598 0.643 0.199
ENSG00000123329 E029 30.1744837 0.0097393710 8.145390e-01 9.323260e-01 12 57475833 57475931 99 - 1.464 1.448 -0.058
ENSG00000123329 E030 23.1651752 0.0008740923 2.675532e-01 5.609631e-01 12 57476071 57476077 7 - 1.393 1.320 -0.251
ENSG00000123329 E031 36.3467459 0.0076044021 4.253852e-02 2.010092e-01 12 57476078 57476135 58 - 1.616 1.491 -0.430
ENSG00000123329 E032 27.6893235 0.0218169888 1.188218e-01 3.643309e-01 12 57476136 57476157 22 - 1.501 1.377 -0.429
ENSG00000123329 E033 21.6361291 0.0164259859 1.592418e-01 4.265695e-01 12 57476158 57476159 2 - 1.393 1.278 -0.399
ENSG00000123329 E034 19.9034237 0.0190166622 1.751364e-01 4.490519e-01 12 57476160 57476166 7 - 1.359 1.243 -0.404
ENSG00000123329 E035 1.0973387 0.0114179983 1.227544e-01 3.708417e-01 12 57476167 57476185 19 - 0.455 0.217 -1.515
ENSG00000123329 E036 1.9750851 0.0073432951 5.506911e-01 7.948458e-01 12 57476186 57476260 75 - 0.508 0.418 -0.457
ENSG00000123329 E037 4.4593128 0.0043738299 7.106902e-01 8.830578e-01 12 57476261 57476363 103 - 0.736 0.689 -0.193
ENSG00000123329 E038 26.8386596 0.0129733818 1.652945e-01 4.349225e-01 12 57476364 57476376 13 - 1.475 1.371 -0.360
ENSG00000123329 E039 41.1737091 0.0019134655 1.555328e-02 1.077624e-01 12 57476377 57476454 78 - 1.668 1.544 -0.422
ENSG00000123329 E040 25.5731270 0.0007999545 6.177595e-01 8.345416e-01 12 57476590 57476651 62 - 1.405 1.374 -0.109
ENSG00000123329 E041 20.2109829 0.0007318822 1.342958e-05 4.402198e-04 12 57476652 57476729 78 - 1.011 1.362 1.250
ENSG00000123329 E042 16.7464848 0.0008141159 1.706126e-07 9.447452e-06 12 57476730 57476830 101 - 0.816 1.303 1.782
ENSG00000123329 E043 4.9082551 0.0146348981 1.358890e-02 9.812250e-02 12 57476831 57476870 40 - 0.455 0.813 1.572
ENSG00000123329 E044 2.0799344 0.0067373558 5.690098e-02 2.382869e-01 12 57476871 57476887 17 - 0.637 0.361 -1.363
ENSG00000123329 E045 0.0000000       12 57476888 57476933 46 -      
ENSG00000123329 E046 6.5498209 0.0261459495 3.068990e-01 6.001570e-01 12 57476934 57476963 30 - 0.924 0.802 -0.471
ENSG00000123329 E047 1.5238468 0.0159988376 8.024319e-03 6.927269e-02 12 57476964 57477155 192 - 0.000 0.469 13.773
ENSG00000123329 E048 11.3007992 0.0414299628 8.775484e-01 9.584351e-01 12 57477156 57477213 58 - 1.056 1.049 -0.023
ENSG00000123329 E049 8.1664365 0.0080914137 3.256241e-01 6.181482e-01 12 57477214 57477269 56 - 0.995 0.892 -0.386
ENSG00000123329 E050 0.3809703 0.0310954393 3.940787e-01   12 57477270 57477458 189 - 0.000 0.172 11.851
ENSG00000123329 E051 7.0995396 0.0061485385 5.098501e-01 7.675483e-01 12 57477459 57477479 21 - 0.816 0.892 0.292
ENSG00000123329 E052 22.5544794 0.0095971800 3.092081e-01 6.025520e-01 12 57477480 57477542 63 - 1.273 1.353 0.277
ENSG00000123329 E053 44.1134538 0.0003259747 9.085960e-01 9.710257e-01 12 57477543 57477676 134 - 1.609 1.614 0.019
ENSG00000123329 E054 7.7167658 0.0187666704 6.520315e-01 8.534423e-01 12 57477677 57477680 4 - 0.863 0.918 0.211
ENSG00000123329 E055 5.2520869 0.0210846287 2.297091e-01 5.182653e-01 12 57477681 57477784 104 - 0.637 0.802 0.681
ENSG00000123329 E056 17.1550844 0.0122801827 8.751070e-01 9.573281e-01 12 57477785 57478000 216 - 1.209 1.223 0.049
ENSG00000123329 E057 4.5024860 0.0238569135 3.102494e-01 6.034733e-01 12 57478001 57478198 198 - 0.598 0.743 0.614
ENSG00000123329 E058 3.6630718 0.0038292975 1.908629e-03 2.469628e-02 12 57478278 57478398 121 - 0.241 0.730 2.561
ENSG00000123329 E059 3.1494621 0.0074144218 3.174542e-02 1.683372e-01 12 57478399 57478539 141 - 0.324 0.659 1.681
ENSG00000123329 E060 4.1903332 0.0373091309 2.344761e-01 5.235282e-01 12 57478540 57478757 218 - 0.791 0.627 -0.679
ENSG00000123329 E061 2.2671872 0.0998229288 1.010117e-01 3.318692e-01 12 57479091 57479165 75 - 0.241 0.555 1.807
ENSG00000123329 E062 6.7347990 0.0020361821 3.044529e-01 5.978433e-01 12 57479166 57479424 259 - 0.764 0.883 0.464
ENSG00000123329 E063 4.8955021 0.0066001871 3.348415e-02 1.741163e-01 12 57479425 57479632 208 - 0.508 0.802 1.266
ENSG00000123329 E064 3.6468266 0.0436688720 6.010795e-02 2.459870e-01 12 57479730 57479788 59 - 0.395 0.703 1.451
ENSG00000123329 E065 16.1149305 0.0193476234 2.711863e-05 7.970659e-04 12 57479789 57480368 580 - 0.816 1.285 1.720
ENSG00000123329 E066 2.9004769 0.0050131306 1.211307e-02 9.107940e-02 12 57480778 57480834 57 - 0.241 0.643 2.199
ENSG00000123329 E067 2.5200074 0.0545451285 4.701207e-02 2.129818e-01 12 57483895 57483963 69 - 0.241 0.593 1.976
ENSG00000123329 E068 1.2702003 0.0104949433 1.704476e-02 1.140278e-01 12 57483964 57484033 70 - 0.000 0.418 13.573
ENSG00000123329 E069 0.0000000       12 57488612 57488814 203 -      

Help

Please Click HERE to learn more details about the results from DEXseq.