ENSG00000124772

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000244751 ENSG00000124772 No_inf pgKDN_inf CPNE5 protein_coding protein_coding 12.45189 35.25549 1.044831 14.18464 0.1336839 -5.063173 0.50407805 0.86602574 0.24141741 0.24077830 0.10499699 -1.8008887 0.22511667 0.115225 0.204975 0.089750 0.48181606 0.04045617 FALSE TRUE
ENST00000393189 ENSG00000124772 No_inf pgKDN_inf CPNE5 protein_coding protein_coding 12.45189 35.25549 1.044831 14.18464 0.1336839 -5.063173 0.77120369 1.26923781 0.75234292 0.39677187 0.02866078 -0.7467725 0.42256667 0.150775 0.744725 0.593950 0.04045617 0.04045617 FALSE TRUE
ENST00000634222 ENSG00000124772 No_inf pgKDN_inf CPNE5 protein_coding retained_intron 12.45189 35.25549 1.044831 14.18464 0.1336839 -5.063173 0.07902323 0.09389659 0.05107068 0.06726689 0.02948572 -0.7665965 0.05386667 0.031525 0.050300 0.018775 0.44335272 0.04045617 FALSE TRUE
MSTRG.24617.10 ENSG00000124772 No_inf pgKDN_inf CPNE5 protein_coding   12.45189 35.25549 1.044831 14.18464 0.1336839 -5.063173 8.33887060 25.01661179 0.00000000 12.83453710 0.00000000 -11.2892473 0.18467500 0.554025 0.000000 -0.554025 0.36405877 0.04045617   FALSE
MSTRG.24617.8 ENSG00000124772 No_inf pgKDN_inf CPNE5 protein_coding   12.45189 35.25549 1.044831 14.18464 0.1336839 -5.063173 2.63996441 7.91989324 0.00000000 7.91989324 0.00000000 -9.6311576 0.04900833 0.147025 0.000000 -0.147025 0.87555620 0.04045617   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000124772 E001 0.0000000       6 36740775 36740777 3 -      
ENSG00000124772 E002 0.1187032 0.012427531 0.190398769   6 36740778 36740830 53 - 0.135 0.000 -11.213
ENSG00000124772 E003 10.3060068 0.002143992 0.547904394 0.7932371 6 36740831 36741807 977 - 1.020 1.016 -0.015
ENSG00000124772 E004 3.7780592 0.011203773 0.010452105 0.0826817 6 36741808 36742224 417 - 0.321 0.736 2.023
ENSG00000124772 E005 2.2471990 0.006471533 0.522222721 0.7758680 6 36742225 36742372 148 - 0.390 0.519 0.660
ENSG00000124772 E006 1.3675939 0.065017124 0.905354434 0.9697122 6 36742373 36742486 114 - 0.321 0.365 0.268
ENSG00000124772 E007 0.6263019 0.132003324 0.736977576 0.8957127 6 36743689 36743719 31 - 0.135 0.220 0.853
ENSG00000124772 E008 0.9970139 0.013853432 0.810773514 0.9303519 6 36743720 36743762 43 - 0.238 0.298 0.438
ENSG00000124772 E009 0.1268540 0.012798591 1.000000000   6 36743763 36743817 55 - 0.000 0.066 11.425
ENSG00000124772 E010 0.6148522 0.019583395 0.588269456 0.8172766 6 36744268 36744325 58 - 0.238 0.174 -0.562
ENSG00000124772 E011 0.0000000       6 36744326 36744526 201 -      
ENSG00000124772 E012 0.7324829 0.016685530 0.275815480 0.5693405 6 36745048 36745150 103 - 0.321 0.174 -1.147
ENSG00000124772 E013 0.7449400 0.087156730 0.802361931 0.9263857 6 36745388 36745515 128 - 0.238 0.220 -0.147
ENSG00000124772 E014 1.7428987 0.008450985 0.990806391 1.0000000 6 36746396 36746577 182 - 0.390 0.422 0.175
ENSG00000124772 E015 1.3606386 0.010514098 0.583814754 0.8148930 6 36748221 36748267 47 - 0.390 0.333 -0.340
ENSG00000124772 E016 0.0000000       6 36752580 36752620 41 -      
ENSG00000124772 E017 1.4873665 0.009590783 0.728581690 0.8917784 6 36753034 36753095 62 - 0.390 0.365 -0.147
ENSG00000124772 E018 0.8703795 0.098779541 1.000000000 1.0000000 6 36754233 36756244 2012 - 0.238 0.261 0.175
ENSG00000124772 E019 1.3511392 0.010862747 0.238153400 0.5270705 6 36756245 36756298 54 - 0.450 0.298 -0.884
ENSG00000124772 E020 0.8368317 0.172254085 0.004249151 0.0442885 6 36757285 36757409 125 - 0.503 0.066 -3.733
ENSG00000124772 E021 0.6328821 0.407508940 0.352308414 0.6423733 6 36762917 36762925 9 - 0.000 0.260 13.149
ENSG00000124772 E022 1.0141347 0.018753628 0.048764072 0.2175746 6 36762926 36762992 67 - 0.000 0.365 13.738
ENSG00000124772 E023 1.0152984 0.012778920 0.047959969 0.2154843 6 36765335 36765376 42 - 0.000 0.365 13.740
ENSG00000124772 E024 0.3813786 0.018756285 0.449069264   6 36765713 36765800 88 - 0.000 0.174 12.696
ENSG00000124772 E025 3.4557114 0.006231850 0.217933208 0.5042908 6 36774961 36775065 105 - 0.700 0.579 -0.519
ENSG00000124772 E026 0.0000000       6 36778854 36778855 2 -      
ENSG00000124772 E027 0.0000000       6 36778856 36778957 102 -      
ENSG00000124772 E028 0.0000000       6 36792033 36792096 64 -      
ENSG00000124772 E029 0.0000000       6 36792396 36792443 48 -      
ENSG00000124772 E030 0.0000000       6 36792444 36792446 3 -      
ENSG00000124772 E031 0.3809057 0.016918795 0.448289662   6 36794590 36794649 60 - 0.000 0.174 12.697
ENSG00000124772 E032 0.3809057 0.016918795 0.448289662   6 36798165 36798241 77 - 0.000 0.174 12.697
ENSG00000124772 E033 0.1176306 0.011870605 0.191044786   6 36798455 36798494 40 - 0.135 0.000 -13.759
ENSG00000124772 E034 0.6156049 0.016658124 0.589458250 0.8181099 6 36799967 36800070 104 - 0.238 0.174 -0.562
ENSG00000124772 E035 0.3711203 0.017670069 0.842346683   6 36822114 36822160 47 - 0.135 0.124 -0.147
ENSG00000124772 E036 0.2438580 0.016993863 0.471696183   6 36823058 36823098 41 - 0.135 0.066 -1.147
ENSG00000124772 E037 0.1272623 0.012667834 1.000000000   6 36839283 36839444 162 - 0.000 0.066 11.425

Help

Please Click HERE to learn more details about the results from DEXseq.