ENSG00000126012

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000375401 ENSG00000126012 No_inf pgKDN_inf KDM5C protein_coding protein_coding 31.73539 30.44637 30.68715 3.824284 0.7641904 0.01136053 15.905616 14.616641 14.3529528 0.7500977 2.4532970 -0.02624614 0.50911667 0.508925 0.466075 -0.042850 0.91951864 0.01088077 FALSE TRUE
ENST00000477109 ENSG00000126012 No_inf pgKDN_inf KDM5C protein_coding protein_coding_CDS_not_defined 31.73539 30.44637 30.68715 3.824284 0.7641904 0.01136053 2.665378 4.291015 0.6857648 2.4893759 0.6857648 -2.62800562 0.07428333 0.117600 0.021400 -0.096200 0.77196149 0.01088077 FALSE FALSE
ENST00000497100 ENSG00000126012 No_inf pgKDN_inf KDM5C protein_coding retained_intron 31.73539 30.44637 30.68715 3.824284 0.7641904 0.01136053 2.137055 2.562636 1.5082303 0.2609488 0.6081622 -0.76085651 0.06835833 0.087350 0.049350 -0.038000 0.72409646 0.01088077 FALSE TRUE
MSTRG.30009.8 ENSG00000126012 No_inf pgKDN_inf KDM5C protein_coding   31.73539 30.44637 30.68715 3.824284 0.7641904 0.01136053 1.785078 2.593001 1.4601384 0.3655499 0.4942629 -0.82422366 0.05975000 0.093300 0.047150 -0.046150 0.72533923 0.01088077 FALSE TRUE
MSTRG.30009.9 ENSG00000126012 No_inf pgKDN_inf KDM5C protein_coding   31.73539 30.44637 30.68715 3.824284 0.7641904 0.01136053 5.820455 1.126024 9.5143954 0.6503968 1.7790095 3.06763443 0.18250000 0.030750 0.311675 0.280925 0.01088077 0.01088077 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000126012 E001 0.1272623 0.0123642244 0.484819004   X 53176283 53176287 5 - 0.000 0.100 9.551
ENSG00000126012 E002 0.1272623 0.0123642244 0.484819004   X 53176288 53176292 5 - 0.000 0.100 12.118
ENSG00000126012 E003 0.3817870 0.5803052747 0.272515680   X 53176293 53176340 48 - 0.000 0.249 12.492
ENSG00000126012 E004 0.5089233 0.2245592616 0.064592539 0.25616114 X 53176341 53176342 2 - 0.000 0.308 13.291
ENSG00000126012 E005 1.8883237 0.1019942832 0.006892078 0.06246300 X 53176343 53176622 280 - 0.165 0.640 2.858
ENSG00000126012 E006 0.2536433 0.0159747886 0.208836262   X 53176623 53176634 12 - 0.000 0.181 13.056
ENSG00000126012 E007 0.9963544 0.0175067778 0.117646548 0.36233148 X 53179745 53179826 82 - 0.165 0.407 1.741
ENSG00000126012 E008 0.0000000       X 53185055 53185156 102 -      
ENSG00000126012 E009 0.5085150 0.0159766712 0.035158879 0.17947868 X 53191080 53191320 241 - 0.000 0.308 13.996
ENSG00000126012 E010 1.6231568 0.0460123226 0.040645051 0.19560544 X 53191321 53191583 263 - 0.229 0.554 1.894
ENSG00000126012 E011 0.7345878 0.0143268497 0.899035662 0.96692902 X 53191584 53191622 39 - 0.229 0.249 0.157
ENSG00000126012 E012 4.8239792 0.0032141713 0.038386778 0.18919423 X 53191623 53192157 535 - 0.628 0.873 0.993
ENSG00000126012 E013 7.9598718 0.0244531928 0.807736047 0.92905752 X 53192158 53192256 99 - 0.937 0.967 0.112
ENSG00000126012 E014 12.1576104 0.0086869774 0.259377456 0.55192424 X 53192257 53192291 35 - 1.067 1.167 0.361
ENSG00000126012 E015 49.0155160 0.0005873664 0.124036727 0.37312716 X 53192292 53192486 195 - 1.665 1.732 0.229
ENSG00000126012 E016 57.5183345 0.0049969775 0.471720805 0.73905779 X 53192487 53192837 351 - 1.750 1.785 0.120
ENSG00000126012 E017 23.2391976 0.0006017531 0.890093974 0.96328484 X 53192838 53192928 91 - 1.379 1.389 0.035
ENSG00000126012 E018 82.9924076 0.0006448274 0.890557944 0.96355625 X 53192929 53193332 404 - 1.925 1.923 -0.009
ENSG00000126012 E019 20.0549626 0.0007171789 0.842998395 0.94381241 X 53193437 53193497 61 - 1.316 1.331 0.051
ENSG00000126012 E020 28.7385364 0.0004940985 0.731424715 0.89325394 X 53193498 53193636 139 - 1.463 1.484 0.071
ENSG00000126012 E021 3.6912833 0.0160648025 0.332813963 0.62491575 X 53193773 53193781 9 - 0.604 0.732 0.544
ENSG00000126012 E022 20.0822431 0.0211438347 0.371029125 0.65908243 X 53193782 53193851 70 - 1.362 1.281 -0.283
ENSG00000126012 E023 110.7101483 0.0001517771 0.442828788 0.71803736 X 53194139 53194738 600 - 2.037 2.060 0.077
ENSG00000126012 E024 27.3709303 0.0005332581 0.876343025 0.95806213 X 53194931 53195068 138 - 1.456 1.449 -0.024
ENSG00000126012 E025 17.7142713 0.0008063991 0.034497080 0.17738192 X 53195231 53195308 78 - 1.193 1.341 0.519
ENSG00000126012 E026 27.2166004 0.0172402762 0.393872793 0.67867322 X 53195309 53195410 102 - 1.416 1.484 0.234
ENSG00000126012 E027 33.7017926 0.0004874010 0.243774696 0.53382323 X 53195916 53196054 139 - 1.509 1.570 0.209
ENSG00000126012 E028 65.0201050 0.0006585207 0.988603739 1.00000000 X 53196686 53197044 359 - 1.819 1.820 0.005
ENSG00000126012 E029 1.1119420 0.4904765687 0.399633762 0.68338134 X 53197657 53197770 114 - 0.229 0.407 1.159
ENSG00000126012 E030 20.3161520 0.0052450685 0.641383044 0.84774088 X 53197771 53197876 106 - 1.311 1.346 0.122
ENSG00000126012 E031 25.4126023 0.0005840841 0.720824311 0.88752219 X 53198490 53198637 148 - 1.431 1.412 -0.066
ENSG00000126012 E032 3.4778060 0.0042721851 0.031098903 0.16619978 X 53198638 53198763 126 - 0.489 0.772 1.234
ENSG00000126012 E033 24.7833233 0.0033408789 0.019632727 0.12555237 X 53198764 53198888 125 - 1.477 1.331 -0.506
ENSG00000126012 E034 35.4036408 0.0003989855 0.521236468 0.77530531 X 53198977 53199158 182 - 1.576 1.545 -0.103
ENSG00000126012 E035 0.6077713 0.0195609056 0.742602638 0.89832747 X 53200109 53201303 1195 - 0.229 0.181 -0.428
ENSG00000126012 E036 0.3716209 0.0165053928 0.521089321   X 53201304 53201549 246 - 0.091 0.181 1.157
ENSG00000126012 E037 31.8098537 0.0049496215 0.044970303 0.20730476 X 53201550 53201744 195 - 1.453 1.573 0.413
ENSG00000126012 E038 26.4435759 0.0006835951 0.288196530 0.58181950 X 53201854 53201973 120 - 1.467 1.407 -0.204
ENSG00000126012 E039 0.6158846 0.0179363077 0.575660331 0.81011518 X 53201974 53202773 800 - 0.165 0.249 0.742
ENSG00000126012 E040 0.0000000       X 53208891 53209081 191 -      
ENSG00000126012 E041 1.5133352 0.0125543847 0.001229059 0.01755045 X 53209082 53210413 1332 - 0.091 0.585 3.616
ENSG00000126012 E042 38.8789245 0.0091296477 0.966966168 0.99335451 X 53210414 53210576 163 - 1.599 1.602 0.011
ENSG00000126012 E043 31.3626003 0.0004452393 0.336873992 0.62883611 X 53210676 53210857 182 - 1.483 1.536 0.179
ENSG00000126012 E044 25.0527000 0.0005812516 0.983205616 0.99869026 X 53211497 53211655 159 - 1.416 1.416 0.002
ENSG00000126012 E045 0.2536433 0.0159747886 0.208836262   X 53211656 53211786 131 - 0.000 0.181 13.056
ENSG00000126012 E046 23.9984920 0.0086474881 0.382090720 0.66831189 X 53211787 53211906 120 - 1.427 1.366 -0.211
ENSG00000126012 E047 30.9581114 0.0005407373 0.005971179 0.05628633 X 53214689 53214847 159 - 1.570 1.425 -0.499
ENSG00000126012 E048 0.0000000       X 53215714 53215794 81 -      
ENSG00000126012 E049 23.7315351 0.0006208208 0.135490296 0.39115371 X 53215795 53215976 182 - 1.435 1.346 -0.306
ENSG00000126012 E050 18.0487508 0.0007345968 0.497037982 0.75788736 X 53216074 53216197 124 - 1.301 1.257 -0.157
ENSG00000126012 E051 22.9117861 0.0032840467 0.264379420 0.55740367 X 53217143 53217274 132 - 1.412 1.341 -0.245
ENSG00000126012 E052 7.0044296 0.0538578483 0.062762789 0.25180750 X 53217275 53217277 3 - 1.012 0.752 -0.996
ENSG00000126012 E053 10.6967623 0.0215331083 0.245839325 0.53650150 X 53217796 53217809 14 - 1.123 1.002 -0.442
ENSG00000126012 E054 10.4609014 0.0160292784 0.290497069 0.58404205 X 53217810 53217828 19 - 1.108 1.002 -0.387
ENSG00000126012 E055 10.7090281 0.0127451789 0.368760184 0.65717306 X 53217829 53217852 24 - 1.108 1.024 -0.306
ENSG00000126012 E056 20.0246626 0.0047668287 0.696922371 0.87625617 X 53217853 53217966 114 - 1.335 1.309 -0.090
ENSG00000126012 E057 10.2596565 0.0275631243 0.788890589 0.91896382 X 53218276 53218314 39 - 1.067 1.034 -0.120
ENSG00000126012 E058 10.3883908 0.0181855743 0.944660160 0.98466075 X 53218315 53218398 84 - 1.058 1.054 -0.014
ENSG00000126012 E059 0.0000000       X 53218399 53218563 165 -      
ENSG00000126012 E060 0.0000000       X 53218564 53218712 149 -      
ENSG00000126012 E061 0.0000000       X 53218713 53218737 25 -      
ENSG00000126012 E062 8.5545371 0.0017262776 0.966187701 0.99310809 X 53220839 53220916 78 - 0.981 0.979 -0.009
ENSG00000126012 E063 0.2459655 0.0162055390 0.935310047   X 53221688 53221704 17 - 0.091 0.100 0.157
ENSG00000126012 E064 0.5986116 0.0151555274 0.211787591 0.49682686 X 53221705 53221730 26 - 0.285 0.100 -1.843
ENSG00000126012 E065 0.7178763 0.0134967867 0.119326603 0.36502530 X 53221731 53221793 63 - 0.334 0.100 -2.165
ENSG00000126012 E066 0.0000000       X 53221794 53221818 25 -      
ENSG00000126012 E067 30.4834956 0.0011907365 0.009150625 0.07585764 X 53224740 53225422 683 - 1.562 1.420 -0.486

Help

Please Click HERE to learn more details about the results from DEXseq.