ENSG00000126804

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000358738 ENSG00000126804 No_inf pgKDN_inf ZBTB1 protein_coding protein_coding 26.84739 18.53836 32.54973 0.5524232 1.523788 0.8117975 4.278398 2.639665 5.050079 1.524299 1.836856 0.93335021 0.1581083 0.146700 0.149625 0.002925 0.86011759 0.03540557 FALSE TRUE
ENST00000553583 ENSG00000126804 No_inf pgKDN_inf ZBTB1 protein_coding protein_coding 26.84739 18.53836 32.54973 0.5524232 1.523788 0.8117975 3.943062 0.000000 5.841167 0.000000 2.506202 9.19258055 0.1238667 0.000000 0.170425 0.170425 0.03540557 0.03540557 FALSE TRUE
ENST00000683701 ENSG00000126804 No_inf pgKDN_inf ZBTB1 protein_coding protein_coding 26.84739 18.53836 32.54973 0.5524232 1.523788 0.8117975 7.232425 5.316400 9.491572 3.084126 4.515039 0.83500561 0.2716500 0.295450 0.292950 -0.002500 0.92058770 0.03540557 FALSE TRUE
MSTRG.8660.8 ENSG00000126804 No_inf pgKDN_inf ZBTB1 protein_coding   26.84739 18.53836 32.54973 0.5524232 1.523788 0.8117975 2.656935 2.512074 3.586324 1.450793 2.476875 0.51191252 0.1039750 0.131925 0.119600 -0.012325 0.98342913 0.03540557 FALSE TRUE
MSTRG.8660.9 ENSG00000126804 No_inf pgKDN_inf ZBTB1 protein_coding   26.84739 18.53836 32.54973 0.5524232 1.523788 0.8117975 6.297717 6.151452 6.451169 3.552340 3.978610 0.06852486 0.2491833 0.323150 0.203250 -0.119900 0.99480097 0.03540557 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000126804 E001 0.0000000       14 64503712 64503724 13 +      
ENSG00000126804 E002 0.0000000       14 64503725 64503822 98 +      
ENSG00000126804 E003 0.0000000       14 64503823 64503846 24 +      
ENSG00000126804 E004 0.0000000       14 64503847 64503888 42 +      
ENSG00000126804 E005 0.1265070 0.0122066827 0.369188989   14 64503889 64503950 62 + 0.000 0.112 9.938
ENSG00000126804 E006 0.1265070 0.0122066827 0.369188989   14 64503951 64503984 34 + 0.000 0.112 11.304
ENSG00000126804 E007 0.0000000       14 64503985 64503996 12 +      
ENSG00000126804 E008 0.1265070 0.0122066827 0.369188989   14 64503997 64504050 54 + 0.000 0.112 11.304
ENSG00000126804 E009 0.1265070 0.0122066827 0.369188989   14 64504051 64504091 41 + 0.000 0.112 11.304
ENSG00000126804 E010 0.2363338 0.0156307687 0.395559145   14 64504153 64504199 47 + 0.148 0.000 -12.334
ENSG00000126804 E011 0.0000000       14 64504574 64504725 152 +      
ENSG00000126804 E012 0.0000000       14 64504726 64504769 44 +      
ENSG00000126804 E013 0.0000000       14 64504770 64504776 7 +      
ENSG00000126804 E014 0.0000000       14 64504777 64504781 5 +      
ENSG00000126804 E015 0.0000000       14 64504782 64504946 165 +      
ENSG00000126804 E016 1.6161748 0.0113003924 0.042688213 0.20134483 14 64511249 64511384 136 + 0.259 0.562 1.699
ENSG00000126804 E017 0.3629044 0.0167717796 0.837398267   14 64511762 64511800 39 + 0.148 0.112 -0.471
ENSG00000126804 E018 2.9720046 0.0427889896 0.023627199 0.14054366 14 64516600 64516751 152 + 0.420 0.756 1.529
ENSG00000126804 E019 267.7730800 0.0002060402 0.003509345 0.03884593 14 64521487 64523402 1916 + 2.440 2.404 -0.120
ENSG00000126804 E020 131.8088109 0.0001424408 0.008794514 0.07373498 14 64523403 64525269 1867 + 2.092 2.152 0.199
ENSG00000126804 E021 53.7176378 0.0011659143 0.767978835 0.91023339 14 64531861 64533690 1830 + 1.739 1.727 -0.039

Help

Please Click HERE to learn more details about the results from DEXseq.