ENSG00000127948

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000449920 ENSG00000127948 No_inf pgKDN_inf POR protein_coding protein_coding 39.30782 34.3842 34.4046 1.773122 1.61023 0.0008554201 4.4119264 4.090457 0.00000 2.3638078 0.0000000 -8.6796411 0.08669167 0.112275 0.000000 -0.112275 0.482053186 0.003068015   FALSE
ENST00000460892 ENSG00000127948 No_inf pgKDN_inf POR protein_coding retained_intron 39.30782 34.3842 34.4046 1.773122 1.61023 0.0008554201 0.7456536 2.236961 0.00000 1.3766893 0.0000000 -7.8118312 0.02073333 0.062200 0.000000 -0.062200 0.481012145 0.003068015 FALSE FALSE
ENST00000461988 ENSG00000127948 No_inf pgKDN_inf POR protein_coding protein_coding 39.30782 34.3842 34.4046 1.773122 1.61023 0.0008554201 19.7632672 13.549198 21.94973 0.8785618 1.4017040 0.6955887 0.51101667 0.394125 0.637100 0.242975 0.003068015 0.003068015 FALSE TRUE
ENST00000493973 ENSG00000127948 No_inf pgKDN_inf POR protein_coding retained_intron 39.30782 34.3842 34.4046 1.773122 1.61023 0.0008554201 9.9154905 8.764172 10.52224 0.5516758 0.7977639 0.2634774 0.26348333 0.255175 0.304625 0.049450 0.819939105 0.003068015 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000127948 E001 0.0000000       7 75899200 75899272 73 +      
ENSG00000127948 E002 0.0000000       7 75907576 75907631 56 +      
ENSG00000127948 E003 0.7181936 0.0151646569 0.13948084 0.3971469 7 75915149 75915154 6 + 0.326 0.103 -2.059
ENSG00000127948 E004 0.9626782 0.0118039641 0.23179956 0.5204463 7 75915155 75915156 2 + 0.369 0.186 -1.322
ENSG00000127948 E005 1.0895321 0.0113892213 0.45731610 0.7292511 7 75915157 75915163 7 + 0.369 0.256 -0.737
ENSG00000127948 E006 1.7962077 0.0077568325 0.03957934 0.1929211 7 75915164 75915173 10 + 0.566 0.256 -1.737
ENSG00000127948 E007 2.2753269 0.0090604842 0.02783160 0.1558068 7 75915174 75915179 6 + 0.639 0.316 -1.644
ENSG00000127948 E008 0.0000000       7 75915180 75915181 2 +      
ENSG00000127948 E009 0.0000000       7 75915182 75915196 15 +      
ENSG00000127948 E010 0.0000000       7 75915197 75915209 13 +      
ENSG00000127948 E011 0.2533610 0.0161226866 0.18860805   7 75915210 75915660 451 + 0.000 0.186 12.733
ENSG00000127948 E012 0.0000000       7 75915661 75915666 6 +      
ENSG00000127948 E013 0.0000000       7 75915667 75915767 101 +      
ENSG00000127948 E014 0.0000000       7 75918644 75918701 58 +      
ENSG00000127948 E015 0.0000000       7 75921161 75921251 91 +      
ENSG00000127948 E016 0.1170040 0.0118901061 0.63837474   7 75945322 75945392 71 + 0.088 0.000 -12.339
ENSG00000127948 E017 0.3720642 0.0168919852 0.48184109   7 75946772 75947244 473 + 0.088 0.186 1.263
ENSG00000127948 E018 6.7791563 0.0025637511 0.13508078 0.3907873 7 75953989 75954075 87 + 0.956 0.804 -0.585
ENSG00000127948 E019 11.7526049 0.0139443201 0.34251379 0.6339444 7 75954076 75954180 105 + 1.061 1.150 0.323
ENSG00000127948 E020 0.0000000       7 75967843 75967844 2 +      
ENSG00000127948 E021 0.0000000       7 75967845 75968128 284 +      
ENSG00000127948 E022 0.0000000       7 75968129 75968277 149 +      
ENSG00000127948 E023 0.2458395 0.0166874780 0.89322864   7 75970987 75971092 106 + 0.088 0.103 0.263
ENSG00000127948 E024 12.0025712 0.0011269555 0.39075075 0.6761266 7 75972413 75972461 49 + 1.077 1.150 0.263
ENSG00000127948 E025 0.0000000       7 75972462 75972764 303 +      
ENSG00000127948 E026 22.5894067 0.0006261470 0.03685398 0.1848597 7 75979451 75979579 129 + 1.306 1.436 0.451
ENSG00000127948 E027 0.0000000       7 75979580 75979786 207 +      
ENSG00000127948 E028 22.6451753 0.0005885355 0.29823490 0.5912299 7 75980339 75980488 150 + 1.400 1.341 -0.207
ENSG00000127948 E029 0.6341407 0.0150282361 0.01235621 0.0920724 7 75980489 75980722 234 + 0.000 0.369 13.930
ENSG00000127948 E030 0.1271363 0.0123577809 0.45220352   7 75980723 75980738 16 + 0.000 0.103 11.805
ENSG00000127948 E031 0.3804973 0.0159435487 0.07383392   7 75980932 75981047 116 + 0.000 0.256 13.270
ENSG00000127948 E032 12.2928718 0.0059652042 0.32263712 0.6155895 7 75981048 75981097 50 + 1.159 1.079 -0.286
ENSG00000127948 E033 14.6119987 0.0151779130 0.53852849 0.7871968 7 75981098 75981172 75 + 1.215 1.167 -0.173
ENSG00000127948 E034 19.6158452 0.0352540721 0.67157062 0.8637293 7 75981517 75981606 90 + 1.329 1.296 -0.115
ENSG00000127948 E035 0.5089233 0.1902317885 0.05204687 0.2265066 7 75981911 75982105 195 + 0.000 0.317 13.203
ENSG00000127948 E036 12.3927287 0.0017261974 0.19133165 0.4708131 7 75982224 75982261 38 + 1.172 1.069 -0.369
ENSG00000127948 E037 17.9098745 0.0008238186 0.48953426 0.7525093 7 75982262 75982322 61 + 1.296 1.253 -0.152
ENSG00000127948 E038 0.3802150 0.0506373462 0.07756481   7 75983316 75983435 120 + 0.000 0.256 13.153
ENSG00000127948 E039 0.1265070 0.0123006226 0.45222062   7 75983436 75983519 84 + 0.000 0.103 11.805
ENSG00000127948 E040 22.8669626 0.0098812490 0.72119331 0.8876706 7 75983520 75983636 117 + 1.364 1.391 0.093
ENSG00000127948 E041 0.4994824 0.0474946737 0.24898821   7 75983637 75983737 101 + 0.088 0.256 1.848
ENSG00000127948 E042 14.3996510 0.0229035688 0.84647792 0.9455490 7 75983738 75983788 51 + 1.197 1.174 -0.081
ENSG00000127948 E043 18.3059541 0.0011055710 0.93724371 0.9820871 7 75983789 75983856 68 + 1.286 1.284 -0.007
ENSG00000127948 E044 28.6093899 0.0124847069 0.45056347 0.7238104 7 75984777 75984958 182 + 1.494 1.444 -0.170
ENSG00000127948 E045 17.4767473 0.0009087375 0.65002158 0.8526050 7 75985058 75985207 150 + 1.249 1.284 0.122
ENSG00000127948 E046 0.5067220 0.0708884986 0.03431893 0.1769219 7 75985208 75985366 159 + 0.000 0.316 13.467
ENSG00000127948 E047 0.7246389 0.4381902096 0.90261788 0.9688647 7 75985570 75985578 9 + 0.277 0.186 -0.735
ENSG00000127948 E048 41.5361437 0.0003574131 0.06842615 0.2640028 7 75985579 75985849 271 + 1.586 1.671 0.288
ENSG00000127948 E049 29.2179495 0.0005207537 0.61058504 0.8306795 7 75985923 75986059 137 + 1.465 1.496 0.106
ENSG00000127948 E050 13.2862799 0.0098898957 0.63034406 0.8414677 7 75986060 75986068 9 + 1.172 1.134 -0.137
ENSG00000127948 E051 23.6300369 0.0006057324 0.33386644 0.6257940 7 75986159 75986241 83 + 1.415 1.361 -0.187
ENSG00000127948 E052 1.6148538 0.0097621240 0.09141704 0.3140150 7 75986242 75986316 75 + 0.277 0.533 1.433
ENSG00000127948 E053 1.3640733 0.4298138064 0.52895523 0.7804314 7 75986317 75986336 20 + 0.278 0.459 1.068
ENSG00000127948 E054 68.7335349 0.0002352124 0.93515981 0.9813392 7 75986337 75986855 519 + 1.840 1.846 0.022

Help

Please Click HERE to learn more details about the results from DEXseq.