ENSG00000128928

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000479013 ENSG00000128928 No_inf pgKDN_inf IVD protein_coding protein_coding 29.60463 31.52198 26.35258 1.931554 0.7095001 -0.2583241 0.9493425 2.848028 0.0000000 1.6984700 0.0000000 -8.158876 0.03372500 0.101175 0.000000 -0.101175 5.561933e-01 1.150057e-07 FALSE TRUE
ENST00000484250 ENSG00000128928 No_inf pgKDN_inf IVD protein_coding retained_intron 29.60463 31.52198 26.35258 1.931554 0.7095001 -0.2583241 1.7954238 3.259542 0.0000000 1.5233246 0.0000000 -8.352945 0.05290000 0.097150 0.000000 -0.097150 4.630405e-02 1.150057e-07 FALSE TRUE
ENST00000487418 ENSG00000128928 No_inf pgKDN_inf IVD protein_coding protein_coding 29.60463 31.52198 26.35258 1.931554 0.7095001 -0.2583241 13.4978637 7.375468 19.0741511 1.4533856 0.3922055 1.369614 0.47233333 0.233375 0.724450 0.491075 1.150057e-07 1.150057e-07 FALSE TRUE
ENST00000497816 ENSG00000128928 No_inf pgKDN_inf IVD protein_coding retained_intron 29.60463 31.52198 26.35258 1.931554 0.7095001 -0.2583241 1.3063723 2.197106 0.0000000 0.5459596 0.0000000 -7.786012 0.04015833 0.067550 0.000000 -0.067550 8.179345e-04 1.150057e-07 FALSE TRUE
ENST00000559575 ENSG00000128928 No_inf pgKDN_inf IVD protein_coding protein_coding 29.60463 31.52198 26.35258 1.931554 0.7095001 -0.2583241 3.0586418 6.838714 0.1841739 1.5331226 0.1841739 -5.140412 0.09592500 0.212875 0.007550 -0.205325 1.949152e-04 1.150057e-07   FALSE
ENST00000560660 ENSG00000128928 No_inf pgKDN_inf IVD protein_coding retained_intron 29.60463 31.52198 26.35258 1.931554 0.7095001 -0.2583241 2.6434182 3.444355 1.1988874 0.4270493 0.1493348 -1.514737 0.08825833 0.110975 0.045325 -0.065650 3.810241e-01 1.150057e-07   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000128928 E001 0.2346346 0.0155721061 3.317513e-01   15 40405485 40405794 310 + 0.156 0.000 -10.603
ENSG00000128928 E002 0.8355720 0.0125958525 9.325662e-02 3.174115e-01 15 40405795 40405810 16 + 0.362 0.106 -2.231
ENSG00000128928 E003 10.4140908 0.0013848835 7.710997e-02 2.840550e-01 15 40405811 40405971 161 + 1.118 0.968 -0.547
ENSG00000128928 E004 0.8536641 0.0673247108 9.522630e-01 9.881082e-01 15 40406074 40406181 108 + 0.271 0.262 -0.061
ENSG00000128928 E005 0.6092445 0.0214551375 8.491144e-01 9.464293e-01 15 40406182 40406350 169 + 0.217 0.191 -0.231
ENSG00000128928 E006 8.2905207 0.0035365598 9.063673e-04 1.391518e-02 15 40407636 40407725 90 + 1.088 0.756 -1.259
ENSG00000128928 E007 0.7276653 0.0139413369 5.876898e-01 8.170244e-01 15 40407726 40407812 87 + 0.271 0.191 -0.646
ENSG00000128928 E008 4.6794509 0.0030686832 6.272980e-03 5.832145e-02 15 40407939 40407945 7 + 0.875 0.543 -1.383
ENSG00000128928 E009 8.0937475 0.0021395927 3.188234e-02 1.687149e-01 15 40407946 40407990 45 + 1.040 0.833 -0.778
ENSG00000128928 E010 11.7766099 0.0018041945 2.246107e-01 5.121181e-01 15 40410628 40410718 91 + 1.146 1.051 -0.344
ENSG00000128928 E011 6.9189402 0.0085972465 4.055959e-01 6.883337e-01 15 40410719 40410735 17 + 0.933 0.850 -0.316
ENSG00000128928 E012 10.6513771 0.0013462135 5.244392e-02 2.275734e-01 15 40410736 40410797 62 + 1.132 0.968 -0.597
ENSG00000128928 E013 15.1510165 0.0107115886 9.877257e-02 3.280155e-01 15 40411260 40411353 94 + 1.263 1.129 -0.476
ENSG00000128928 E014 11.2555830 0.0020316882 5.611498e-02 2.361874e-01 15 40411555 40411607 53 + 1.153 0.994 -0.577
ENSG00000128928 E015 14.6998840 0.0009810666 3.053250e-01 5.986027e-01 15 40411608 40411691 84 + 1.225 1.155 -0.251
ENSG00000128928 E016 0.3810317 0.0219523476 6.690772e-02   15 40412612 40412679 68 + 0.000 0.262 12.901
ENSG00000128928 E017 15.7514552 0.0014659917 6.152132e-01 8.329668e-01 15 40412991 40413087 97 + 1.203 1.246 0.152
ENSG00000128928 E018 1.3864808 0.0291214744 1.547037e-03 2.094325e-02 15 40413088 40413178 91 + 0.085 0.576 3.675
ENSG00000128928 E019 6.1126773 0.0022955785 1.019121e-05 3.470031e-04 15 40414406 40414888 483 + 0.556 1.051 1.978
ENSG00000128928 E020 19.6189260 0.0007233708 7.138810e-01 8.847682e-01 15 40414889 40414982 94 + 1.321 1.303 -0.061
ENSG00000128928 E021 1.8945253 0.0073678211 5.576155e-05 1.459099e-03 15 40415146 40415400 255 + 0.085 0.688 4.161
ENSG00000128928 E022 17.5427358 0.0008496826 6.401862e-01 8.470952e-01 15 40415401 40415482 82 + 1.278 1.252 -0.091
ENSG00000128928 E023 14.4116379 0.0015211341 6.139936e-01 8.321848e-01 15 40416078 40416154 77 + 1.166 1.210 0.158
ENSG00000128928 E024 8.3966080 0.0031699647 7.129801e-01 8.840580e-01 15 40416155 40416166 12 + 0.985 0.955 -0.110
ENSG00000128928 E025 8.3960358 0.0191116589 7.688625e-01 9.106268e-01 15 40416167 40416182 16 + 0.985 0.955 -0.110
ENSG00000128928 E026 13.6276250 0.0118380586 6.699332e-01 8.629267e-01 15 40416290 40416362 73 + 1.178 1.146 -0.114
ENSG00000128928 E027 98.6105372 0.0002653615 1.045877e-02 8.269610e-02 15 40418130 40419179 1050 + 2.025 1.960 -0.220
ENSG00000128928 E028 192.5920813 0.0009944947 9.137589e-07 4.307926e-05 15 40419180 40421313 2134 + 2.236 2.337 0.337
ENSG00000128928 E029 0.2438580 0.0162320959 8.583224e-01   15 40424135 40424216 82 + 0.085 0.106 0.354
ENSG00000128928 E030 0.6076104 0.0211673387 8.491876e-01 9.464293e-01 15 40424217 40424473 257 + 0.217 0.191 -0.231
ENSG00000128928 E031 0.1268540 0.0123107516 4.266426e-01   15 40433854 40433914 61 + 0.000 0.106 11.438
ENSG00000128928 E032 9.8305935 0.0015541100 5.574376e-02 2.352856e-01 15 40435417 40435947 531 + 0.944 1.120 0.643

Help

Please Click HERE to learn more details about the results from DEXseq.