ENSG00000129003

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000249837 ENSG00000129003 No_inf pgKDN_inf VPS13C protein_coding protein_coding 35.09873 33.32822 37.99737 2.396418 0.7615568 0.1891021 2.378512 0.6571843 3.741364 0.2989360 0.3680820 2.4912580 0.06740000 0.021650 0.099000 0.077350 0.121056253 0.001548027 FALSE TRUE
ENST00000559119 ENSG00000129003 No_inf pgKDN_inf VPS13C protein_coding retained_intron 35.09873 33.32822 37.99737 2.396418 0.7615568 0.1891021 2.996842 3.7998848 2.902377 1.4095293 1.3393838 -0.3875500 0.08281667 0.107325 0.074625 -0.032700 0.834289373 0.001548027   FALSE
ENST00000560637 ENSG00000129003 No_inf pgKDN_inf VPS13C protein_coding retained_intron 35.09873 33.32822 37.99737 2.396418 0.7615568 0.1891021 4.848365 8.2729830 2.976253 0.7139312 0.4805706 -1.4718142 0.14204167 0.250450 0.078475 -0.171975 0.012459008 0.001548027 FALSE FALSE
MSTRG.9746.5 ENSG00000129003 No_inf pgKDN_inf VPS13C protein_coding   35.09873 33.32822 37.99737 2.396418 0.7615568 0.1891021 18.316060 16.1179073 20.157798 0.9101100 0.8670692 0.3224943 0.52355000 0.486600 0.532425 0.045825 0.839167787 0.001548027 FALSE TRUE
MSTRG.9746.6 ENSG00000129003 No_inf pgKDN_inf VPS13C protein_coding   35.09873 33.32822 37.99737 2.396418 0.7615568 0.1891021 3.171609 0.2782569 5.504992 0.2782569 0.9807305 4.2579317 0.08684167 0.007175 0.143825 0.136650 0.001548027 0.001548027 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000129003 E001 0.0000000       15 61852389 61852397 9 -      
ENSG00000129003 E002 0.2533610 0.0160431050 1.776802e-01   15 61852398 61852403 6 - 0.000 0.189 9.684
ENSG00000129003 E003 0.3703650 0.0166937790 4.599179e-01   15 61852404 61852407 4 - 0.086 0.189 1.320
ENSG00000129003 E004 249.4524575 0.0011638458 1.520955e-05 4.891545e-04 15 61852408 61853451 1044 - 2.352 2.445 0.310
ENSG00000129003 E005 145.9110025 0.0001506100 1.480199e-02 1.040848e-01 15 61853452 61854412 961 - 2.136 2.198 0.206
ENSG00000129003 E006 35.5141480 0.0004872017 5.349569e-02 2.302846e-01 15 61854413 61854558 146 - 1.513 1.612 0.340
ENSG00000129003 E007 25.9481588 0.0007647139 7.663449e-01 9.092959e-01 15 61854871 61854954 84 - 1.436 1.422 -0.048
ENSG00000129003 E008 30.2156741 0.0010176961 7.236814e-01 8.890319e-01 15 61856286 61856409 124 - 1.501 1.485 -0.054
ENSG00000129003 E009 6.1703988 0.0555408183 5.795810e-02 2.409552e-01 15 61856410 61856793 384 - 0.713 0.977 1.027
ENSG00000129003 E010 17.7745093 0.0009473218 1.285841e-01 3.802323e-01 15 61863440 61863528 89 - 1.219 1.327 0.380
ENSG00000129003 E011 15.4001853 0.0311536451 5.951970e-05 1.537421e-03 15 61863529 61864305 777 - 0.970 1.389 1.497
ENSG00000129003 E012 4.9961843 0.0034499725 2.952837e-05 8.557675e-04 15 61864306 61864640 335 - 0.473 0.977 2.104
ENSG00000129003 E013 4.3515867 0.0032824163 1.564947e-03 2.112209e-02 15 61864641 61864820 180 - 0.504 0.894 1.642
ENSG00000129003 E014 9.5487889 0.0014146671 6.279437e-05 1.602749e-03 15 61864821 61865557 737 - 0.811 1.182 1.377
ENSG00000129003 E015 32.3831061 0.0006289357 1.763829e-13 2.530062e-11 15 61865558 61867743 2186 - 1.293 1.691 1.370
ENSG00000129003 E016 3.4609097 0.0047061763 4.003036e-02 1.939578e-01 15 61867744 61867947 204 - 0.504 0.772 1.168
ENSG00000129003 E017 5.3248088 0.0025201400 7.706036e-03 6.741563e-02 15 61867948 61868658 711 - 0.632 0.937 1.220
ENSG00000129003 E018 21.8637094 0.0007182269 7.638982e-01 9.080309e-01 15 61868659 61868768 110 - 1.347 1.370 0.078
ENSG00000129003 E019 9.7166260 0.0013868274 2.878264e-01 5.813014e-01 15 61868769 61868773 5 - 1.069 0.977 -0.341
ENSG00000129003 E020 28.1587837 0.0004715357 3.748504e-02 1.866259e-01 15 61869500 61869623 124 - 1.513 1.399 -0.391
ENSG00000129003 E021 16.8666294 0.0302902745 2.805035e-01 5.738167e-01 15 61871989 61872034 46 - 1.297 1.190 -0.378
ENSG00000129003 E022 26.5027073 0.0103546122 7.479318e-01 9.005752e-01 15 61873246 61873409 164 - 1.425 1.453 0.094
ENSG00000129003 E023 13.6630128 0.0009788407 9.933437e-01 1.000000e+00 15 61874876 61874951 76 - 1.164 1.167 0.010
ENSG00000129003 E024 10.7020248 0.0111349522 5.165840e-01 7.722985e-01 15 61875732 61875786 55 - 1.093 1.035 -0.211
ENSG00000129003 E025 9.8223221 0.0020480526 1.697871e-01 4.418543e-01 15 61875787 61875845 59 - 1.085 0.964 -0.446
ENSG00000129003 E026 13.0927728 0.0011280132 7.323341e-02 2.750728e-01 15 61876973 61877054 82 - 1.207 1.067 -0.503
ENSG00000129003 E027 0.0000000       15 61877055 61877086 32 -      
ENSG00000129003 E028 19.2906941 0.0085314344 1.196456e-01 3.656071e-01 15 61878607 61878746 140 - 1.356 1.241 -0.403
ENSG00000129003 E029 16.6219418 0.0007839556 7.867176e-02 2.875107e-01 15 61880609 61880722 114 - 1.298 1.175 -0.434
ENSG00000129003 E030 14.7970864 0.0045107475 6.876355e-02 2.648254e-01 15 61880843 61880954 112 - 1.257 1.115 -0.506
ENSG00000129003 E031 9.9875402 0.0082400670 7.396767e-01 8.968699e-01 15 61881563 61881632 70 - 1.053 1.024 -0.105
ENSG00000129003 E032 9.5923269 0.0672131609 6.413510e-01 8.477264e-01 15 61881747 61881828 82 - 1.061 0.977 -0.310
ENSG00000129003 E033 14.5918362 0.0010236034 3.989304e-01 6.827294e-01 15 61882596 61882736 141 - 1.219 1.158 -0.215
ENSG00000129003 E034 15.6324044 0.0009680241 6.197148e-01 8.354912e-01 15 61884128 61884269 142 - 1.201 1.241 0.139
ENSG00000129003 E035 17.7406814 0.0007860456 1.710114e-01 4.434041e-01 15 61890165 61890400 236 - 1.312 1.220 -0.323
ENSG00000129003 E036 0.3719033 0.1898132052 5.071323e-01   15 61905902 61905930 29 - 0.086 0.189 1.320
ENSG00000129003 E037 0.3724111 0.2137540002 5.122138e-01   15 61906643 61907263 621 - 0.086 0.189 1.319
ENSG00000129003 E038 12.8702659 0.0026797943 1.593552e-01 4.267248e-01 15 61907264 61907390 127 - 1.189 1.077 -0.403
ENSG00000129003 E039 13.3241144 0.0020048436 8.312986e-02 2.971251e-01 15 61908992 61909125 134 - 1.213 1.077 -0.487
ENSG00000129003 E040 5.6203517 0.0027029770 2.700762e-04 5.337593e-03 15 61910177 61910209 33 - 0.970 0.539 -1.758
ENSG00000129003 E041 7.8008872 0.0022435379 3.445806e-04 6.509496e-03 15 61910210 61910305 96 - 1.077 0.708 -1.417
ENSG00000129003 E042 9.0510839 0.0266975808 6.518154e-02 2.570589e-01 15 61911840 61912004 165 - 1.085 0.879 -0.767
ENSG00000129003 E043 6.3359072 0.0360312460 1.002375e-03 1.503395e-02 15 61913311 61913415 105 - 1.018 0.572 -1.784
ENSG00000129003 E044 15.6543502 0.0009191672 7.496259e-05 1.864867e-03 15 61915633 61916022 390 - 1.334 1.035 -1.065
ENSG00000129003 E045 14.2787137 0.0009663771 1.788642e-02 1.178459e-01 15 61917341 61917635 295 - 1.257 1.077 -0.644
ENSG00000129003 E046 6.9746035 0.0083682879 1.987466e-03 2.545524e-02 15 61918136 61918257 122 - 1.027 0.684 -1.332
ENSG00000129003 E047 7.4325609 0.0050400650 4.430274e-04 7.943563e-03 15 61919289 61919449 161 - 1.061 0.684 -1.458
ENSG00000129003 E048 7.9968733 0.0107965982 1.352208e-01 3.908987e-01 15 61920067 61920331 265 - 1.018 0.863 -0.583
ENSG00000129003 E049 7.1730622 0.0019560167 5.398674e-01 7.881447e-01 15 61920498 61920647 150 - 0.938 0.879 -0.224
ENSG00000129003 E050 5.4016586 0.0354510314 2.861787e-01 5.798181e-01 15 61921947 61922033 87 - 0.731 0.879 0.583
ENSG00000129003 E051 9.7113378 0.0014733146 1.975400e-01 4.788370e-01 15 61922397 61922762 366 - 1.078 0.964 -0.417
ENSG00000129003 E052 2.4028690 0.0062617749 7.221411e-02 2.726463e-01 15 61925456 61925548 93 - 0.632 0.374 -1.265
ENSG00000129003 E053 0.5993033 0.0149981657 2.580858e-01 5.503559e-01 15 61927091 61927320 230 - 0.273 0.105 -1.680
ENSG00000129003 E054 7.8910213 0.0094358326 3.431546e-01 6.344242e-01 15 61929501 61929748 248 - 0.990 0.894 -0.358
ENSG00000129003 E055 4.4833469 0.0716633688 5.330110e-01 7.835004e-01 15 61931090 61931259 170 - 0.781 0.684 -0.395
ENSG00000129003 E056 4.9067039 0.0028726583 3.274665e-01 6.200308e-01 15 61934219 61934331 113 - 0.713 0.829 0.464
ENSG00000129003 E057 5.4767931 0.0056181579 7.459434e-01 8.995467e-01 15 61936597 61936750 154 - 0.826 0.792 -0.133
ENSG00000129003 E058 4.9541892 0.0029396353 9.346296e-02 3.178731e-01 15 61940647 61940794 148 - 0.853 0.658 -0.787
ENSG00000129003 E059 9.7985087 0.0016399621 3.980833e-02 1.934072e-01 15 61941763 61942067 305 - 1.108 0.923 -0.680
ENSG00000129003 E060 6.0393643 0.0057365226 7.651093e-02 2.828874e-01 15 61945715 61945882 168 - 0.927 0.730 -0.767
ENSG00000129003 E061 3.6035366 0.0461207543 3.510134e-02 1.793271e-01 15 61946307 61946410 104 - 0.781 0.465 -1.396
ENSG00000129003 E062 4.2846450 0.0054132844 6.525898e-01 8.536691e-01 15 61947193 61947309 117 - 0.694 0.752 0.237
ENSG00000129003 E063 3.1936134 0.0594496955 4.115827e-01 6.931372e-01 15 61949443 61949605 163 - 0.560 0.684 0.542
ENSG00000129003 E064 1.7040004 0.0081946535 8.920676e-01 9.641748e-01 15 61950358 61950417 60 - 0.440 0.422 -0.095
ENSG00000129003 E065 2.1906438 0.0072248094 9.843687e-01 9.987896e-01 15 61950945 61951024 80 - 0.504 0.503 -0.002
ENSG00000129003 E066 1.4675165 0.0115467742 7.156941e-01 8.853470e-01 15 61951824 61951859 36 - 0.364 0.422 0.320
ENSG00000129003 E067 3.2928678 0.0217551044 9.877629e-01 9.998311e-01 15 61951860 61951980 121 - 0.632 0.632 -0.002
ENSG00000129003 E068 1.7071447 0.0128237328 8.937354e-01 9.648264e-01 15 61954421 61954466 46 - 0.440 0.422 -0.095
ENSG00000129003 E069 3.0196002 0.0064771764 2.040542e-01 4.867519e-01 15 61954467 61954554 88 - 0.674 0.503 -0.767
ENSG00000129003 E070 3.5997041 0.0175404180 2.190614e-02 1.343972e-01 15 61958608 61958716 109 - 0.781 0.465 -1.396
ENSG00000129003 E071 2.5263836 0.0387370859 6.958556e-02 2.667397e-01 15 61959448 61959595 148 - 0.654 0.374 -1.358
ENSG00000129003 E072 4.9836654 0.0035447783 4.700382e-01 7.380001e-01 15 61961589 61961837 249 - 0.811 0.730 -0.324
ENSG00000129003 E073 1.6959430 0.0704712862 5.155857e-01 7.715839e-01 15 61961838 61961893 56 - 0.473 0.374 -0.528
ENSG00000129003 E074 3.6381050 0.0056626147 3.813858e-01 6.678368e-01 15 61962371 61962538 168 - 0.713 0.603 -0.469
ENSG00000129003 E075 2.1671025 0.0064875692 1.448733e-01 4.052065e-01 15 61962749 61962852 104 - 0.585 0.374 -1.059
ENSG00000129003 E076 3.8078270 0.0040526477 2.632315e-01 5.561250e-01 15 61963835 61963951 117 - 0.609 0.752 0.600
ENSG00000129003 E077 5.3400348 0.0025859595 4.227003e-01 7.019496e-01 15 61964699 61964861 163 - 0.840 0.752 -0.347
ENSG00000129003 E078 2.7843140 0.0051131512 3.401289e-01 6.318722e-01 15 61966083 61966142 60 - 0.632 0.503 -0.587
ENSG00000129003 E079 3.0771394 0.0046167982 2.633010e-01 5.562250e-01 15 61967368 61967447 80 - 0.533 0.684 0.668
ENSG00000129003 E080 4.4960299 0.0040612365 4.072993e-01 6.898187e-01 15 61969299 61969452 154 - 0.781 0.684 -0.396
ENSG00000129003 E081 3.3153620 0.0043314959 4.608191e-01 7.319790e-01 15 61972625 61972764 140 - 0.585 0.684 0.427
ENSG00000129003 E082 1.8502387 0.0101925909 2.428221e-01 5.324809e-01 15 61973454 61973532 79 - 0.364 0.539 0.905
ENSG00000129003 E083 3.4098867 0.0260281263 8.523233e-01 9.478202e-01 15 61974288 61974417 130 - 0.654 0.632 -0.095
ENSG00000129003 E084 3.2761153 0.0042837789 4.262617e-01 7.049478e-01 15 61977082 61977199 118 - 0.674 0.572 -0.446
ENSG00000129003 E085 1.9691330 0.0074233429 3.598495e-01 6.493618e-01 15 61978626 61978749 124 - 0.404 0.539 0.683
ENSG00000129003 E086 2.7659245 0.0827621470 5.965133e-02 2.448845e-01 15 61981342 61981478 137 - 0.694 0.374 -1.529
ENSG00000129003 E087 2.2845469 0.1329582845 1.088366e-01 3.463328e-01 15 61982459 61982573 115 - 0.633 0.321 -1.589
ENSG00000129003 E088 0.0000000       15 61983713 61983819 107 -      
ENSG00000129003 E089 4.4046698 0.1474605753 7.438714e-01 8.987043e-01 15 61983820 61984012 193 - 0.713 0.752 0.157
ENSG00000129003 E090 2.5293124 0.1458207551 2.545517e-01 5.462928e-01 15 61984857 61984999 143 - 0.632 0.422 -1.003
ENSG00000129003 E091 1.9236233 0.0077471020 1.075084e-01 3.437286e-01 15 61991000 61991094 95 - 0.560 0.321 -1.265
ENSG00000129003 E092 2.0449685 0.0081443158 7.396684e-02 2.770559e-01 15 61991673 61991775 103 - 0.585 0.321 -1.381
ENSG00000129003 E093 1.4727626 0.0142185585 7.173454e-01 8.862311e-01 15 61991776 61991802 27 - 0.364 0.422 0.320
ENSG00000129003 E094 0.8637042 0.0916934811 5.429863e-01 7.900802e-01 15 62000564 62000626 63 - 0.219 0.321 0.735
ENSG00000129003 E095 1.8369343 0.0794879971 8.586008e-01 9.507027e-01 15 62007308 62007479 172 - 0.440 0.465 0.127
ENSG00000129003 E096 1.8275849 0.0140926987 7.227944e-01 8.886033e-01 15 62008655 62008761 107 - 0.473 0.422 -0.265
ENSG00000129003 E097 2.4619162 0.0090021363 3.642463e-01 6.530136e-01 15 62010472 62010599 128 - 0.473 0.603 0.609
ENSG00000129003 E098 1.5715517 0.0298230654 3.257458e-01 6.182487e-01 15 62012107 62012164 58 - 0.473 0.321 -0.850
ENSG00000129003 E099 1.1988587 0.0125328324 1.061728e-01 3.410352e-01 15 62013039 62013119 81 - 0.440 0.189 -1.680
ENSG00000129003 E100 0.7444368 0.0141572939 2.830051e-01 5.767025e-01 15 62013933 62013992 60 - 0.158 0.321 1.320
ENSG00000129003 E101 1.6968868 0.0079116973 5.013566e-01 7.613731e-01 15 62020479 62020538 60 - 0.473 0.374 -0.528
ENSG00000129003 E102 3.3808150 0.0536241711 1.319592e-01 3.854348e-01 15 62023411 62023520 110 - 0.731 0.504 -1.002
ENSG00000129003 E103 0.0000000       15 62023780 62023845 66 -      
ENSG00000129003 E104 0.0000000       15 62028358 62028420 63 -      
ENSG00000129003 E105 2.1446383 0.0269716895 3.203180e-03 3.626371e-02 15 62033441 62033542 102 - 0.654 0.189 -2.680
ENSG00000129003 E106 2.1277005 0.0085507615 2.287940e-04 4.674157e-03 15 62034957 62035052 96 - 0.674 0.105 -3.767
ENSG00000129003 E107 1.5594921 0.0082193036 1.089828e-01 3.465858e-01 15 62041324 62041366 43 - 0.504 0.260 -1.417
ENSG00000129003 E108 1.2146525 0.0102284710 7.675194e-01 9.099889e-01 15 62044212 62044255 44 - 0.364 0.321 -0.265
ENSG00000129003 E109 1.1071542 0.0112570937 5.190390e-01 7.738052e-01 15 62060275 62060473 199 - 0.273 0.374 0.642

Help

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