ENSG00000129128

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000503362 ENSG00000129128 No_inf pgKDN_inf SPCS3 protein_coding protein_coding 83.16786 48.62758 107.4619 2.83661 1.415651 1.143816 52.14892 39.78083 64.46098 0.6619978 0.6344904 0.6962138 0.6638417 0.825275 0.59995 -0.225325 0.005758018 0.005758018 FALSE TRUE
ENST00000513139 ENSG00000129128 No_inf pgKDN_inf SPCS3 protein_coding retained_intron 83.16786 48.62758 107.4619 2.83661 1.415651 1.143816 29.19910 6.99197 41.40887 2.5315212 0.9737631 2.5644555 0.3109167 0.135400 0.38520 0.249800 0.185693804 0.005758018 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000129128 E001 5.5297516 1.657233e-02 2.486815e-02 1.449545e-01 4 176319966 176319990 25 + 0.911 0.626 -1.144
ENSG00000129128 E002 7.2065884 4.631857e-03 5.209543e-03 5.112291e-02 4 176319991 176320001 11 + 1.016 0.709 -1.190
ENSG00000129128 E003 38.3815456 8.450076e-04 1.480976e-04 3.270883e-03 4 176320002 176320219 218 + 1.663 1.470 -0.662
ENSG00000129128 E004 15.1597420 1.010383e-03 1.006028e-04 2.388165e-03 4 176320220 176322169 1950 + 1.057 1.345 1.024
ENSG00000129128 E005 32.9146997 5.891013e-03 2.632683e-02 1.503381e-01 4 176322170 176322243 74 + 1.579 1.443 -0.466
ENSG00000129128 E006 62.4329980 2.644379e-03 2.915740e-02 1.602216e-01 4 176324181 176324257 77 + 1.836 1.741 -0.321
ENSG00000129128 E007 0.2357071 1.571597e-02 3.954294e-01   4 176326956 176327161 206 + 0.149 0.000 -9.893
ENSG00000129128 E008 85.0011850 2.169823e-04 1.061907e-01 3.410724e-01 4 176327162 176327277 116 + 1.952 1.898 -0.180
ENSG00000129128 E009 0.9776258 7.502806e-02 6.391620e-01 8.465200e-01 4 176327278 176327381 104 + 0.259 0.337 0.526
ENSG00000129128 E010 1071.1601250 6.172578e-05 1.209834e-06 5.511081e-05 4 176328198 176332245 4048 + 3.017 3.037 0.064

Help

Please Click HERE to learn more details about the results from DEXseq.