ENSG00000129351

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000407004 ENSG00000129351 No_inf pgKDN_inf ILF3 protein_coding protein_coding 105.7313 84.88789 105.6847 1.465158 3.375169 0.3161025 46.897411 29.517331 56.359099 2.0341243 1.325736 0.9328536 0.438925 0.347100 0.535650 0.188550 0.007206419 0.007206419 FALSE TRUE
ENST00000587928 ENSG00000129351 No_inf pgKDN_inf ILF3 protein_coding retained_intron 105.7313 84.88789 105.6847 1.465158 3.375169 0.3161025 13.103098 13.813612 10.917139 1.7549349 1.264529 -0.3392188 0.127875 0.163775 0.104500 -0.059275 0.534212704 0.007206419 TRUE TRUE
ENST00000589173 ENSG00000129351 No_inf pgKDN_inf ILF3 protein_coding retained_intron 105.7313 84.88789 105.6847 1.465158 3.375169 0.3161025 5.954522 7.309918 3.078992 3.2015067 2.034793 -1.2446914 0.056925 0.084350 0.027525 -0.056825 0.688709270 0.007206419 FALSE FALSE
ENST00000593061 ENSG00000129351 No_inf pgKDN_inf ILF3 protein_coding protein_coding 105.7313 84.88789 105.6847 1.465158 3.375169 0.3161025 7.774135 7.203396 2.389897 3.3520074 1.393093 -1.5877061 0.072100 0.086675 0.021900 -0.064775 0.667411032 0.007206419 FALSE FALSE
MSTRG.14513.1 ENSG00000129351 No_inf pgKDN_inf ILF3 protein_coding   105.7313 84.88789 105.6847 1.465158 3.375169 0.3161025 20.830401 14.945642 25.796546 0.3178919 1.463373 0.7870472 0.197200 0.176075 0.243850 0.067775 0.368646501 0.007206419 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000129351 E001 2.7984139 5.388795e-03 6.016791e-01 8.257521e-01 19 10654269 10654303 35 + 0.610 0.539 -0.322
ENSG00000129351 E002 5.6192308 2.643538e-03 8.868736e-01 9.621398e-01 19 10654304 10654327 24 + 0.812 0.828 0.064
ENSG00000129351 E003 8.0095484 1.001799e-02 2.086706e-01 4.927292e-01 19 10654328 10654345 18 + 1.009 0.878 -0.492
ENSG00000129351 E004 8.3706250 4.407119e-03 1.735239e-01 4.467872e-01 19 10654346 10654360 15 + 1.028 0.894 -0.500
ENSG00000129351 E005 12.5154787 1.070448e-03 2.424197e-01 5.320888e-01 19 10654361 10654381 21 + 1.171 1.076 -0.340
ENSG00000129351 E006 46.3622709 7.582786e-03 3.364222e-01 6.283842e-01 19 10654382 10654487 106 + 1.698 1.645 -0.182
ENSG00000129351 E007 0.2457744 1.640285e-02 8.663122e-01   19 10654938 10655023 86 + 0.086 0.105 0.316
ENSG00000129351 E008 0.3644125 2.113231e-01 7.698967e-01   19 10655024 10655123 100 + 0.158 0.105 -0.685
ENSG00000129351 E009 0.0000000       19 10655124 10655147 24 +      
ENSG00000129351 E010 0.1272623 1.234691e-02 4.322488e-01   19 10655496 10655585 90 + 0.000 0.105 9.407
ENSG00000129351 E011 1.2335695 1.058002e-02 3.347994e-01 6.266336e-01 19 10666492 10666649 158 + 0.274 0.421 0.901
ENSG00000129351 E012 0.2458395 1.632908e-02 8.664627e-01   19 10670512 10670515 4 + 0.086 0.105 0.316
ENSG00000129351 E013 37.8423028 4.007670e-03 3.322078e-01 6.243830e-01 19 10670516 10670536 21 + 1.612 1.559 -0.181
ENSG00000129351 E014 52.9351371 3.176959e-04 8.298754e-03 7.086526e-02 19 10670537 10670605 69 + 1.778 1.668 -0.372
ENSG00000129351 E015 23.5795185 6.034704e-04 1.307792e-01 3.835329e-01 19 10670606 10670608 3 + 1.430 1.338 -0.319
ENSG00000129351 E016 0.4903553 1.033950e-01 8.422543e-01   19 10670815 10670973 159 + 0.158 0.189 0.315
ENSG00000129351 E017 41.3118909 8.247082e-04 3.598133e-02 1.819783e-01 19 10670974 10671036 63 + 1.669 1.569 -0.340
ENSG00000129351 E018 54.3809718 2.891717e-04 7.837669e-01 9.167855e-01 19 10671037 10671133 97 + 1.747 1.737 -0.035
ENSG00000129351 E019 40.2464256 3.822565e-04 8.975837e-01 9.662344e-01 19 10671134 10671169 36 + 1.617 1.611 -0.018
ENSG00000129351 E020 39.7014801 6.779394e-04 3.039426e-01 5.974566e-01 19 10671170 10671203 34 + 1.630 1.581 -0.167
ENSG00000129351 E021 71.8171163 2.371547e-04 5.432902e-03 5.255930e-02 19 10671358 10671480 123 + 1.904 1.805 -0.335
ENSG00000129351 E022 45.2742884 3.042392e-04 2.162665e-01 5.023724e-01 19 10671481 10671535 55 + 1.689 1.634 -0.186
ENSG00000129351 E023 43.8537905 3.724637e-04 4.909484e-01 7.534161e-01 19 10677163 10677204 42 + 1.665 1.634 -0.104
ENSG00000129351 E024 63.9572123 4.434060e-04 6.173540e-02 2.496354e-01 19 10677205 10677310 106 + 1.843 1.772 -0.240
ENSG00000129351 E025 39.2913518 3.677660e-04 2.185549e-01 5.051535e-01 19 10678613 10678652 40 + 1.630 1.572 -0.199
ENSG00000129351 E026 35.9215024 2.609939e-03 5.455478e-01 7.914883e-01 19 10678653 10678704 52 + 1.581 1.549 -0.108
ENSG00000129351 E027 57.8247680 4.441567e-04 2.073217e-01 4.909633e-01 19 10679097 10679184 88 + 1.791 1.741 -0.169
ENSG00000129351 E028 33.9713950 4.826293e-04 3.754745e-01 6.630170e-01 19 10679185 10679192 8 + 1.563 1.518 -0.154
ENSG00000129351 E029 72.9716268 2.978779e-03 4.434586e-01 7.183079e-01 19 10679816 10679927 112 + 1.882 1.851 -0.106
ENSG00000129351 E030 64.6807603 8.520507e-04 3.343001e-02 1.739186e-01 19 10680346 10680443 98 + 1.853 1.770 -0.278
ENSG00000129351 E031 66.7229369 5.777542e-03 4.106898e-01 6.925383e-01 19 10681019 10681130 112 + 1.847 1.809 -0.130
ENSG00000129351 E032 71.4230628 1.048383e-03 1.627489e-01 4.312984e-01 19 10681219 10681329 111 + 1.882 1.830 -0.175
ENSG00000129351 E033 78.9956696 2.058641e-04 4.854944e-16 9.029191e-14 19 10681330 10681992 663 + 1.750 2.029 0.938
ENSG00000129351 E034 107.1628716 4.764282e-04 1.316910e-04 2.970416e-03 19 10681993 10682192 200 + 2.083 1.967 -0.387
ENSG00000129351 E035 97.1057461 1.765201e-04 3.378859e-01 6.297224e-01 19 10682537 10682704 168 + 2.004 1.975 -0.096
ENSG00000129351 E036 15.9967480 8.772567e-04 7.840675e-01 9.168342e-01 19 10683125 10683136 12 + 1.220 1.240 0.073
ENSG00000129351 E037 77.9534705 7.911674e-04 2.714052e-01 5.651288e-01 19 10683137 10683262 126 + 1.914 1.875 -0.130
ENSG00000129351 E038 90.2715136 1.970543e-04 3.203392e-01 6.131876e-01 19 10683366 10683517 152 + 1.973 1.942 -0.104
ENSG00000129351 E039 34.2040936 3.812577e-03 4.331339e-01 7.106467e-01 19 10683518 10683542 25 + 1.565 1.521 -0.150
ENSG00000129351 E040 61.8770977 3.485534e-03 4.673528e-01 7.357802e-01 19 10683636 10683755 120 + 1.812 1.780 -0.107
ENSG00000129351 E041 45.7209005 3.074172e-04 7.379819e-01 8.960449e-01 19 10683756 10683789 34 + 1.675 1.661 -0.048
ENSG00000129351 E042 65.0257507 2.434912e-04 2.915874e-01 5.851058e-01 19 10683917 10683970 54 + 1.836 1.797 -0.131
ENSG00000129351 E043 3.0789256 7.914891e-02 3.851258e-01 6.712126e-01 19 10683971 10684415 445 + 0.533 0.683 0.664
ENSG00000129351 E044 40.9053783 1.157882e-03 1.799732e-02 1.183019e-01 19 10684416 10684476 61 + 1.671 1.556 -0.392
ENSG00000129351 E045 126.0304020 1.583441e-04 9.619405e-04 1.457121e-02 19 10684477 10684858 382 + 2.142 2.053 -0.297
ENSG00000129351 E046 34.5254374 4.084611e-04 1.045407e-01 3.379245e-01 19 10684859 10684921 63 + 1.586 1.503 -0.282
ENSG00000129351 E047 217.6898317 9.836478e-05 1.884867e-02 1.220682e-01 19 10684922 10685765 844 + 2.360 2.313 -0.156
ENSG00000129351 E048 11.2393729 1.399818e-03 1.380501e-03 1.919462e-02 19 10685928 10687345 1418 + 0.938 1.212 0.994
ENSG00000129351 E049 62.0006217 4.138940e-03 1.893576e-01 4.680054e-01 19 10687346 10687604 259 + 1.769 1.830 0.207
ENSG00000129351 E050 43.6764702 6.069820e-04 4.484391e-03 4.592010e-02 19 10687605 10687708 104 + 1.583 1.714 0.445
ENSG00000129351 E051 3.7223787 4.225623e-02 3.422031e-02 1.765001e-01 19 10687709 10688114 406 + 0.504 0.810 1.315
ENSG00000129351 E052 67.3440176 2.385143e-04 2.275921e-02 1.374267e-01 19 10688550 10688678 129 + 1.792 1.877 0.284
ENSG00000129351 E053 625.8677539 1.276736e-04 6.868115e-26 3.011585e-23 19 10689179 10692400 3222 + 2.736 2.857 0.403

Help

Please Click HERE to learn more details about the results from DEXseq.