ENSG00000129667

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000313080 ENSG00000129667 No_inf pgKDN_inf RHBDF2 protein_coding protein_coding 91.58354 77.83541 87.24466 1.936635 2.304575 0.1646202 6.295224 5.762820 5.5203112 1.1906690 0.8025576 -0.0619155 0.06914167 0.074775 0.062750 -0.012025 0.915867657 0.004689122 FALSE  
ENST00000590168 ENSG00000129667 No_inf pgKDN_inf RHBDF2 protein_coding retained_intron 91.58354 77.83541 87.24466 1.936635 2.304575 0.1646202 3.381411 5.507740 0.6939749 0.8318543 0.3336178 -2.9704816 0.03824167 0.071250 0.007700 -0.063550 0.004689122 0.004689122 TRUE  
ENST00000675367 ENSG00000129667 No_inf pgKDN_inf RHBDF2 protein_coding protein_coding 91.58354 77.83541 87.24466 1.936635 2.304575 0.1646202 14.107932 4.796743 14.9831426 1.7051260 1.8637454 1.6411711 0.14667500 0.060750 0.172950 0.112200 0.382571228 0.004689122 FALSE  
MSTRG.13333.1 ENSG00000129667 No_inf pgKDN_inf RHBDF2 protein_coding   91.58354 77.83541 87.24466 1.936635 2.304575 0.1646202 12.791329 9.567227 14.5813653 2.8749158 1.5215186 0.6074349 0.13958333 0.123275 0.167200 0.043925 0.774464951 0.004689122 FALSE  
MSTRG.13333.3 ENSG00000129667 No_inf pgKDN_inf RHBDF2 protein_coding   91.58354 77.83541 87.24466 1.936635 2.304575 0.1646202 7.508268 4.085974 10.5521822 0.7855519 0.9631058 1.3666294 0.08235000 0.052450 0.122125 0.069675 0.159204381 0.004689122 FALSE  
MSTRG.13333.5 ENSG00000129667 No_inf pgKDN_inf RHBDF2 protein_coding   91.58354 77.83541 87.24466 1.936635 2.304575 0.1646202 32.444437 28.982849 32.6479772 0.7866377 1.9757405 0.1717383 0.35773333 0.373500 0.373300 -0.000200 1.000000000 0.004689122 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000129667 E001 0.1272623 0.0123575022 4.436397e-01   17 76470864 76470890 27 - 0.000 0.104 9.647
ENSG00000129667 E002 0.3707734 0.0164786618 4.717168e-01   17 76470891 76470894 4 - 0.087 0.187 1.282
ENSG00000129667 E003 0.4976273 0.0157096085 2.357687e-01   17 76470895 76470895 1 - 0.087 0.258 1.867
ENSG00000129667 E004 58.7118057 0.0002665035 8.912498e-01 0.963784425 17 76470896 76471068 173 - 1.772 1.779 0.023
ENSG00000129667 E005 351.0507042 0.0000892306 1.673648e-01 0.438060675 17 76471069 76471813 745 - 2.535 2.557 0.073
ENSG00000129667 E006 123.6805206 0.0001504475 6.560308e-01 0.855941886 17 76471814 76472052 239 - 2.089 2.102 0.045
ENSG00000129667 E007 3.5877612 0.0943161918 1.654841e-01 0.435224538 17 76472053 76472170 118 - 0.537 0.768 0.992
ENSG00000129667 E008 82.2221514 0.0002890337 6.050305e-01 0.827821460 17 76472686 76472839 154 - 1.910 1.929 0.063
ENSG00000129667 E009 3.6375812 0.0038704281 3.652395e-05 0.001020665 17 76472840 76473004 165 - 0.324 0.874 2.545
ENSG00000129667 E010 57.2390826 0.0008157090 9.238329e-01 0.976827713 17 76473005 76473105 101 - 1.765 1.763 -0.008
ENSG00000129667 E011 52.7137402 0.0002680432 1.504886e-01 0.413076139 17 76473252 76473327 76 - 1.755 1.698 -0.195
ENSG00000129667 E012 51.4568275 0.0003349655 5.680089e-01 0.805675168 17 76473648 76473742 95 - 1.729 1.707 -0.075
ENSG00000129667 E013 35.3436078 0.0049784663 4.433516e-01 0.718259342 17 76473839 76473902 64 - 1.538 1.583 0.152
ENSG00000129667 E014 44.7519746 0.0072075824 6.218334e-01 0.836995492 17 76474033 76474142 110 - 1.672 1.645 -0.089
ENSG00000129667 E015 1.4701483 0.0209950679 7.475245e-01 0.900314537 17 76474204 76474372 169 - 0.368 0.418 0.282
ENSG00000129667 E016 56.9555503 0.0002666656 8.148705e-02 0.293444791 17 76474373 76474534 162 - 1.793 1.725 -0.229
ENSG00000129667 E017 2.0956397 0.0068366099 2.677536e-01 0.561203390 17 76474660 76474729 70 - 0.407 0.568 0.797
ENSG00000129667 E018 27.0280404 0.0007675951 4.191754e-01 0.698759164 17 76474730 76474788 59 - 1.424 1.471 0.165
ENSG00000129667 E019 16.3732663 0.0480052427 8.325477e-01 0.939621430 17 76474789 76474804 16 - 1.224 1.255 0.109
ENSG00000129667 E020 35.5274650 0.0019942842 7.920227e-01 0.920524724 17 76475030 76475141 112 - 1.554 1.570 0.054
ENSG00000129667 E021 1.3611441 0.0203005327 2.328870e-01 0.521567964 17 76475142 76475194 53 - 0.276 0.461 1.089
ENSG00000129667 E022 2.0024353 0.0823435149 1.066688e-02 0.083778571 17 76475792 76475922 131 - 0.222 0.654 2.398
ENSG00000129667 E023 4.6267005 0.0928973425 3.194764e-03 0.036183621 17 76475923 76476829 907 - 0.443 0.946 2.140
ENSG00000129667 E024 55.6556116 0.0065783650 3.990893e-01 0.682883398 17 76476830 76477024 195 - 1.772 1.729 -0.144
ENSG00000129667 E025 38.7078301 0.0082992778 6.844235e-01 0.869387704 17 76477180 76477287 108 - 1.586 1.612 0.091
ENSG00000129667 E026 18.5092749 0.0021943455 1.255264e-01 0.375555506 17 76477288 76477298 11 - 1.236 1.343 0.378
ENSG00000129667 E027 0.4989795 0.0297289693 2.392472e-01   17 76477646 76477656 11 - 0.087 0.258 1.867
ENSG00000129667 E028 39.7662497 0.0003574071 1.811938e-01 0.457038125 17 76477657 76477785 129 - 1.578 1.643 0.220
ENSG00000129667 E029 56.4230695 0.0002950640 1.978876e-02 0.126067456 17 76478806 76479009 204 - 1.799 1.707 -0.311
ENSG00000129667 E030 0.6162956 0.0211092376 5.134221e-01 0.770240235 17 76479010 76479081 72 - 0.160 0.258 0.867
ENSG00000129667 E031 24.3694041 0.0022982595 1.451160e-02 0.102723922 17 76479082 76479145 64 - 1.469 1.316 -0.528
ENSG00000129667 E032 27.9016132 0.0029304992 3.370251e-02 0.174695910 17 76479146 76479211 66 - 1.515 1.389 -0.435
ENSG00000129667 E033 27.7887571 0.0006069367 6.810257e-01 0.868188263 17 76479212 76479277 66 - 1.469 1.447 -0.074
ENSG00000129667 E034 13.3369260 0.0010167209 4.799915e-01 0.745503715 17 76479733 76479735 3 - 1.128 1.185 0.203
ENSG00000129667 E035 20.4387413 0.0007100598 3.186809e-01 0.611273960 17 76479736 76479782 47 - 1.298 1.364 0.230
ENSG00000129667 E036 13.3499576 0.0011470390 2.787140e-01 0.571920807 17 76479783 76479785 3 - 1.113 1.200 0.309
ENSG00000129667 E037 25.8772703 0.0005121022 8.767756e-01 0.958242496 17 76479786 76479854 69 - 1.424 1.434 0.037
ENSG00000129667 E038 5.2527679 0.0026699749 8.665976e-01 0.954033927 17 76479855 76479941 87 - 0.786 0.806 0.080
ENSG00000129667 E039 14.5784250 0.0011183521 1.853857e-01 0.463124391 17 76481375 76481382 8 - 1.236 1.136 -0.353
ENSG00000129667 E040 13.9860468 0.0022788095 3.593618e-01 0.648785467 17 76481383 76481383 1 - 1.207 1.136 -0.251
ENSG00000129667 E041 26.7451256 0.0004974333 1.198173e-01 0.365809573 17 76481384 76481438 55 - 1.481 1.394 -0.303
ENSG00000129667 E042 16.1584978 0.0008700734 1.120867e-01 0.351838270 17 76481439 76481445 7 - 1.283 1.169 -0.403
ENSG00000129667 E043 20.5513867 0.0006741734 1.462520e-01 0.407221603 17 76481446 76481484 39 - 1.374 1.281 -0.324
ENSG00000129667 E044 25.7993350 0.0016649078 2.343329e-01 0.523377197 17 76481485 76481545 61 - 1.459 1.389 -0.241
ENSG00000129667 E045 2.8959114 0.0401243903 1.465278e-04 0.003242853 17 76481546 76481894 349 - 0.222 0.806 3.019
ENSG00000129667 E046 0.9994345 0.0120345473 9.031754e-02 0.312095480 17 76487411 76487711 301 - 0.160 0.418 1.867
ENSG00000129667 E047 34.7967048 0.0005408916 8.033934e-01 0.926932170 17 76487712 76487851 140 - 1.546 1.561 0.049
ENSG00000129667 E048 18.7163042 0.0007931722 4.398131e-01 0.715658786 17 76487852 76487909 58 - 1.268 1.322 0.188
ENSG00000129667 E049 3.3373870 0.0043368188 6.788246e-02 0.262901942 17 76487910 76487973 64 - 0.508 0.747 1.048
ENSG00000129667 E050 4.1380842 0.0093916439 6.447719e-01 0.849541446 17 76487974 76488014 41 - 0.736 0.679 -0.232
ENSG00000129667 E051 7.1216056 0.0179838975 2.718226e-01 0.565583152 17 76488015 76488132 118 - 0.845 0.972 0.481
ENSG00000129667 E052 5.6270486 0.0656547603 2.953454e-04 0.005731975 17 76488133 76488526 394 - 0.477 1.030 2.282
ENSG00000129667 E053 1.9566358 0.0074145846 7.052009e-01 0.880179227 17 76493062 76493202 141 - 0.443 0.500 0.282
ENSG00000129667 E054 19.3802147 0.0012595797 1.552496e-02 0.107680454 17 76500936 76501352 417 - 1.378 1.214 -0.572
ENSG00000129667 E055 5.6587487 0.0026777074 5.903936e-03 0.055852904 17 76501353 76501430 78 - 0.943 0.627 -1.262
ENSG00000129667 E056 0.1170040 0.0117465175 6.502355e-01   17 76501459 76501790 332 - 0.087 0.000 -12.415

Help

Please Click HERE to learn more details about the results from DEXseq.