ENSG00000130340

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000392185 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding protein_coding 82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 24.387899 6.695179 27.453168 3.9479421 5.500831 2.0341502 0.27664167 0.222450 0.271750 0.049300 8.147586e-01 4.397032e-11 FALSE TRUE
ENST00000679790 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding nonsense_mediated_decay 82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 1.795754 5.387263 0.000000 3.1779056 0.000000 -9.0760841 0.05949167 0.178475 0.000000 -0.178475 3.195277e-01 4.397032e-11 FALSE TRUE
ENST00000680495 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding protein_coding 82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 1.704255 4.093660 0.000000 2.4877422 0.000000 -8.6807673 0.04586667 0.128625 0.000000 -0.128625 2.900820e-01 4.397032e-11 FALSE TRUE
ENST00000680863 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding protein_coding 82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 4.933355 1.793124 7.646471 0.4754477 2.660380 2.0861811 0.06054167 0.058350 0.076950 0.018600 9.350931e-01 4.397032e-11 FALSE TRUE
MSTRG.25577.22 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding   82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 5.055714 4.646103 5.463908 4.6461034 5.463908 0.2334481 0.08256667 0.149025 0.054150 -0.094875 9.403412e-01 4.397032e-11 FALSE TRUE
MSTRG.25577.24 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding   82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 12.721521 2.359856 28.312765 2.3598556 5.089210 3.5790911 0.13972500 0.073200 0.281475 0.208275 2.444560e-02 4.397032e-11 FALSE TRUE
MSTRG.25577.3 ENSG00000130340 No_inf pgKDN_inf SNX9 protein_coding   82.55944 30.92569 100.8979 0.5157654 1.793925 1.705695 21.645741 0.000000 20.543752 0.0000000 5.163219 11.0051860 0.19522500 0.000000 0.202750 0.202750 4.397032e-11 4.397032e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000130340 E001 0.0000000       6 157700387 157700471 85 +      
ENSG00000130340 E002 0.0000000       6 157716046 157716203 158 +      
ENSG00000130340 E003 0.1187032 1.186320e-02 1.000000e+00   6 157766385 157766536 152 + 0.058 0.000 -8.288
ENSG00000130340 E004 0.0000000       6 157779824 157779867 44 +      
ENSG00000130340 E005 2.9597587 2.804938e-02 6.200730e-03 0.0578033425 6 157794207 157794328 122 + 0.645 0.153 -3.017
ENSG00000130340 E006 1.0807157 2.004630e-01 8.699516e-01 0.9552119508 6 157823161 157823205 45 + 0.300 0.266 -0.239
ENSG00000130340 E007 2.4093782 2.049948e-01 8.355805e-01 0.9408981493 6 157823206 157823220 15 + 0.496 0.492 -0.018
ENSG00000130340 E008 2.7732265 1.526719e-01 7.727878e-01 0.9125440309 6 157823221 157823221 1 + 0.534 0.548 0.064
ENSG00000130340 E009 4.4523953 3.762265e-02 9.340087e-01 0.9810138460 6 157823222 157823243 22 + 0.697 0.681 -0.070
ENSG00000130340 E010 4.6955281 1.565405e-02 9.496263e-01 0.9868878837 6 157823244 157823245 2 + 0.710 0.717 0.032
ENSG00000130340 E011 15.8831596 1.119492e-03 8.828914e-01 0.9605624231 6 157823246 157823389 144 + 1.174 1.185 0.040
ENSG00000130340 E012 13.1402718 1.186865e-03 3.287831e-01 0.6212586455 6 157823390 157823446 57 + 1.077 1.161 0.301
ENSG00000130340 E013 0.0000000       6 157829661 157829706 46 +      
ENSG00000130340 E014 0.0000000       6 157830230 157830257 28 +      
ENSG00000130340 E015 0.1176306 1.178137e-02 1.000000e+00   6 157836870 157836918 49 + 0.058 0.000 -10.635
ENSG00000130340 E016 28.8891329 5.497964e-04 1.431631e-01 0.4029474347 6 157867547 157867633 87 + 1.447 1.352 -0.330
ENSG00000130340 E017 0.1176306 1.178137e-02 1.000000e+00   6 157871886 157871919 34 + 0.058 0.000 -10.635
ENSG00000130340 E018 14.9860656 1.073524e-03 2.513767e-01 0.5425780746 6 157873102 157873176 75 + 1.178 1.078 -0.361
ENSG00000130340 E019 0.0000000       6 157875051 157875176 126 +      
ENSG00000130340 E020 1.4605499 2.420740e-02 2.272017e-01 0.5155410290 6 157876169 157876478 310 + 0.300 0.492 1.082
ENSG00000130340 E021 0.6173954 2.087697e-02 1.039914e-01 0.3369787308 6 157888571 157888660 90 + 0.109 0.355 2.153
ENSG00000130340 E022 35.4427477 6.564574e-03 6.072285e-02 0.2473958527 6 157896827 157896998 172 + 1.540 1.413 -0.438
ENSG00000130340 E023 19.1764094 7.140780e-04 1.754565e-01 0.4494666531 6 157901898 157901927 30 + 1.280 1.173 -0.377
ENSG00000130340 E024 42.2523031 7.393456e-03 2.055953e-02 0.1291609321 6 157901928 157902045 118 + 1.620 1.466 -0.526
ENSG00000130340 E025 44.3510116 5.562159e-04 1.094694e-01 0.3472732067 6 157906128 157906212 85 + 1.626 1.540 -0.290
ENSG00000130340 E026 3.4649096 4.517118e-02 1.399352e-04 0.0031276810 6 157906213 157907730 1518 + 0.384 0.934 2.416
ENSG00000130340 E027 6.0322686 1.438165e-02 1.001270e-05 0.0003413560 6 157907731 157909664 1934 + 0.600 1.107 1.983
ENSG00000130340 E028 63.8660770 2.495537e-04 3.604850e-01 0.6501604558 6 157909665 157909790 126 + 1.770 1.730 -0.135
ENSG00000130340 E029 63.6124559 6.261115e-04 1.754260e-01 0.4494293928 6 157909908 157910025 118 + 1.773 1.712 -0.205
ENSG00000130340 E030 0.1186381 1.187105e-02 1.000000e+00   6 157910026 157910347 322 + 0.058 0.000 -10.633
ENSG00000130340 E031 70.3828262 2.024809e-03 5.019299e-01 0.7617058484 6 157921531 157921661 131 + 1.809 1.778 -0.104
ENSG00000130340 E032 63.8706395 7.839091e-03 3.858886e-01 0.6716962660 6 157927111 157927214 104 + 1.772 1.723 -0.166
ENSG00000130340 E033 0.5971582 1.858275e-01 9.072547e-01 0.9705390442 6 157927763 157928598 836 + 0.195 0.153 -0.431
ENSG00000130340 E034 77.1857376 2.269011e-04 1.643315e-01 0.4336152433 6 157928599 157928702 104 + 1.854 1.799 -0.187
ENSG00000130340 E035 65.7979625 1.346921e-03 9.879749e-01 0.9998900780 6 157932195 157932272 78 + 1.772 1.772 0.000
ENSG00000130340 E036 1.3483377 1.451133e-02 4.172754e-02 0.1986875012 6 157932273 157932672 400 + 0.233 0.548 1.831
ENSG00000130340 E037 73.7434089 2.132595e-04 8.104467e-01 0.9301322302 6 157935964 157936040 77 + 1.818 1.827 0.029
ENSG00000130340 E038 75.6118294 2.100437e-04 8.921628e-01 0.9641747849 6 157937434 157937523 90 + 1.833 1.827 -0.020
ENSG00000130340 E039 0.7329225 5.137115e-02 2.068804e-01 0.4905429477 6 157937524 157937946 423 + 0.154 0.355 1.568
ENSG00000130340 E040 1.1065245 1.091897e-02 5.559407e-02 0.2349070708 6 157937947 157938632 686 + 0.196 0.492 1.890
ENSG00000130340 E041 70.9477282 6.185970e-03 3.613641e-01 0.6508100593 6 157938633 157938747 115 + 1.816 1.769 -0.161
ENSG00000130340 E042 10.7807334 2.174569e-02 1.481141e-05 0.0004803598 6 157938748 157940882 2135 + 0.852 1.300 1.633
ENSG00000130340 E043 36.5429101 2.014285e-02 9.100317e-01 0.9714906375 6 157940883 157940904 22 + 1.520 1.530 0.034
ENSG00000130340 E044 54.1283790 2.887553e-03 3.933168e-01 0.6782045055 6 157940905 157940974 70 + 1.701 1.656 -0.152
ENSG00000130340 E045 2.4431181 2.869184e-02 7.127143e-02 0.2705150737 6 157940975 157941239 265 + 0.409 0.681 1.278
ENSG00000130340 E046 0.7455088 2.437658e-01 6.973985e-02 0.2670654000 6 157941240 157941258 19 + 0.109 0.429 2.567
ENSG00000130340 E047 15.7797578 8.734591e-04 9.474447e-04 0.0143942198 6 157941259 157942790 1532 + 1.092 1.344 0.890
ENSG00000130340 E048 244.3556614 7.876513e-05 2.408119e-01 0.5300770569 6 157942791 157943453 663 + 2.343 2.318 -0.084
ENSG00000130340 E049 257.5859752 1.020128e-04 2.299817e-02 0.1383584106 6 157943454 157944027 574 + 2.347 2.391 0.148
ENSG00000130340 E050 210.4412066 1.164077e-04 1.396784e-02 0.0998734625 6 157944028 157945077 1050 + 2.257 2.311 0.180

Help

Please Click HERE to learn more details about the results from DEXseq.