ENSG00000130714

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000341012 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding protein_coding 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 1.9354730 1.001714 3.2946439 1.001714 1.9105758 1.707693 0.08960833 0.054800 0.126675 0.071875 0.81353703 0.02660972 FALSE TRUE
ENST00000372220 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding protein_coding 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 2.4385853 3.165529 0.9179772 1.328448 0.5378465 -1.774836 0.08878333 0.072925 0.037575 -0.035350 0.81504448 0.02660972 FALSE TRUE
ENST00000462375 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding protein_coding_CDS_not_defined 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 12.4957854 37.487356 0.0000000 21.744230 0.0000000 -11.872573 0.12370833 0.371125 0.000000 -0.371125 0.71384313 0.02660972   FALSE
ENST00000467848 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding retained_intron 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 2.2958564 1.119859 2.8327162 1.119859 1.0598759 1.331128 0.08158333 0.011400 0.101800 0.090400 0.46351955 0.02660972 FALSE FALSE
ENST00000683229 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding protein_coding 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 10.4369183 0.000000 31.3107548 0.000000 10.5036602 11.612903 0.17999167 0.000000 0.539975 0.539975 0.02660972 0.02660972   FALSE
ENST00000683231 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding nonsense_mediated_decay 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 0.8681236 1.048850 0.0000000 1.048850 0.0000000 -6.726355 0.03895000 0.057375 0.000000 -0.057375 0.91762022 0.02660972   FALSE
ENST00000683855 ENSG00000130714 No_inf pgKDN_inf POMT1 protein_coding protein_coding_CDS_not_defined 43.33905 60.39524 47.78704 23.4168 10.92067 -0.3377524 1.4634311 2.749519 0.0000000 1.621109 0.0000000 -8.108273 0.04418333 0.069800 0.000000 -0.069800 0.50966045 0.02660972   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000130714 E001 0.1187032 0.0119559395 0.3551239944   9 131502789 131502894 106 + 0.113 0.000 -11.017
ENSG00000130714 E002 0.1187032 0.0119559395 0.3551239944   9 131502895 131502897 3 + 0.113 0.000 -14.110
ENSG00000130714 E003 0.1187032 0.0119559395 0.3551239944   9 131502898 131502905 8 + 0.113 0.000 -14.110
ENSG00000130714 E004 0.1187032 0.0119559395 0.3551239944   9 131502906 131502917 12 + 0.113 0.000 -14.110
ENSG00000130714 E005 0.0000000       9 131502918 131502919 2 +      
ENSG00000130714 E006 0.0000000       9 131502920 131502921 2 +      
ENSG00000130714 E007 0.0000000       9 131502922 131502929 8 +      
ENSG00000130714 E008 0.0000000       9 131502930 131502935 6 +      
ENSG00000130714 E009 0.1186381 0.0118621739 0.3552285953   9 131502936 131502943 8 + 0.113 0.000 -14.110
ENSG00000130714 E010 0.1186381 0.0118621739 0.3552285953   9 131502944 131502944 1 + 0.113 0.000 -14.110
ENSG00000130714 E011 0.1186381 0.0118621739 0.3552285953   9 131502945 131502947 3 + 0.113 0.000 -14.110
ENSG00000130714 E012 0.1186381 0.0118621739 0.3552285953   9 131502948 131502949 2 + 0.113 0.000 -14.110
ENSG00000130714 E013 0.1186381 0.0118621739 0.3552285953   9 131502950 131502954 5 + 0.113 0.000 -14.110
ENSG00000130714 E014 0.2372762 0.2653269603 0.1804230156   9 131502955 131502966 12 + 0.203 0.000 -14.648
ENSG00000130714 E015 0.2372762 0.2653269603 0.1804230156   9 131502967 131502967 1 + 0.203 0.000 -14.648
ENSG00000130714 E016 0.7276003 0.0139069517 0.1923615481 0.472270017 9 131502968 131502970 3 + 0.340 0.147 -1.557
ENSG00000130714 E017 0.7276003 0.0139069517 0.1923615481 0.472270017 9 131502971 131502974 4 + 0.340 0.147 -1.557
ENSG00000130714 E018 0.7276003 0.0139069517 0.1923615481 0.472270017 9 131502975 131502977 3 + 0.340 0.147 -1.557
ENSG00000130714 E019 0.8544543 0.0144736085 0.3670774374 0.655726429 9 131502978 131502983 6 + 0.340 0.206 -0.972
ENSG00000130714 E020 0.9813083 0.0622721869 0.5823379444 0.813912627 9 131502984 131502994 11 + 0.340 0.257 -0.558
ENSG00000130714 E021 0.9813083 0.0622721869 0.5823379444 0.813912627 9 131502995 131502995 1 + 0.340 0.257 -0.558
ENSG00000130714 E022 1.8259401 0.0205932103 0.1323004565 0.386019800 9 131502996 131503005 10 + 0.565 0.345 -1.142
ENSG00000130714 E023 1.8259401 0.0205932103 0.1323004565 0.386019800 9 131503006 131503009 4 + 0.565 0.345 -1.142
ENSG00000130714 E024 1.8259401 0.0205932103 0.1323004565 0.386019800 9 131503010 131503011 2 + 0.565 0.345 -1.142
ENSG00000130714 E025 2.8074384 0.0066048097 0.1161847379 0.359328154 9 131503012 131503063 52 + 0.687 0.480 -0.936
ENSG00000130714 E026 2.5717040 0.0123966155 0.2654382560 0.558722511 9 131503064 131503073 10 + 0.630 0.480 -0.695
ENSG00000130714 E027 0.4833068 0.0355653909 0.1670337447   9 131503074 131503075 2 + 0.277 0.080 -2.142
ENSG00000130714 E028 0.4833068 0.0355653909 0.1670337447   9 131503076 131503190 115 + 0.277 0.080 -2.142
ENSG00000130714 E029 0.0000000       9 131503191 131503245 55 +      
ENSG00000130714 E030 0.0000000       9 131503246 131503250 5 +      
ENSG00000130714 E031 0.0000000       9 131503251 131503255 5 +      
ENSG00000130714 E032 0.0000000       9 131503256 131503283 28 +      
ENSG00000130714 E033 0.0000000       9 131503284 131503313 30 +      
ENSG00000130714 E034 0.0000000       9 131503314 131503315 2 +      
ENSG00000130714 E035 0.0000000       9 131503316 131503365 50 +      
ENSG00000130714 E036 1.1322712 0.0262850612 0.0606725875 0.247340539 9 131503438 131504188 751 + 0.113 0.417 2.443
ENSG00000130714 E037 1.7143843 0.0085497541 0.4589240879 0.730696456 9 131504189 131504216 28 + 0.488 0.382 -0.557
ENSG00000130714 E038 0.7427725 0.0147738973 0.7347306407 0.894744808 9 131504217 131504218 2 + 0.202 0.257 0.443
ENSG00000130714 E039 3.7435715 0.0787176287 0.1128859623 0.353462496 9 131504219 131504340 122 + 0.488 0.751 1.159
ENSG00000130714 E040 0.4988531 0.0341598245 0.5530970598   9 131504341 131504453 113 + 0.113 0.206 1.028
ENSG00000130714 E041 1.2513823 0.0101900649 0.1797983312 0.455034639 9 131504454 131504649 196 + 0.202 0.417 1.443
ENSG00000130714 E042 2.4841630 0.0118584123 0.3584772103 0.648012799 9 131504998 131506113 1116 + 0.444 0.583 0.665
ENSG00000130714 E043 5.5379866 0.0126748819 0.7868408541 0.918083130 9 131506114 131506182 69 + 0.822 0.796 -0.105
ENSG00000130714 E044 6.1216475 0.0557002486 0.2354633684 0.524793641 9 131506183 131506220 38 + 0.925 0.781 -0.557
ENSG00000130714 E045 1.1239001 0.0773647929 0.2968431683 0.590054157 9 131506221 131506402 182 + 0.202 0.382 1.250
ENSG00000130714 E046 4.0553343 0.0106444661 0.5361433390 0.785514366 9 131506403 131506411 9 + 0.737 0.666 -0.294
ENSG00000130714 E047 6.8760966 0.0023489148 0.3343191277 0.626169117 9 131506412 131506453 42 + 0.940 0.848 -0.351
ENSG00000130714 E048 2.7257183 0.1436632695 0.8386683020 0.942106797 9 131506454 131507350 897 + 0.528 0.583 0.250
ENSG00000130714 E049 0.0000000       9 131507351 131507367 17 +      
ENSG00000130714 E050 5.0470923 0.0028819573 0.6163599875 0.833690711 9 131507368 131507376 9 + 0.802 0.751 -0.204
ENSG00000130714 E051 10.4691797 0.0113791942 0.6653696890 0.860804490 9 131507377 131507514 138 + 1.068 1.037 -0.112
ENSG00000130714 E052 1.9056338 0.0077426740 0.0002219556 0.004553424 9 131507515 131508174 660 + 0.000 0.605 15.675
ENSG00000130714 E053 2.5235063 0.1441105718 0.0206941346 0.129570172 9 131508175 131508910 736 + 0.203 0.666 2.612
ENSG00000130714 E054 6.2355800 0.0025786888 0.0648907187 0.256697669 9 131508911 131508940 30 + 0.955 0.767 -0.727
ENSG00000130714 E055 5.1458613 0.0027984313 0.1955871466 0.475899899 9 131508941 131508964 24 + 0.859 0.719 -0.557
ENSG00000130714 E056 5.3846574 0.0029278844 0.1044039859 0.337714512 9 131508965 131509022 58 + 0.894 0.719 -0.688
ENSG00000130714 E057 0.6269972 0.1709231445 0.4140545691 0.694434328 9 131509521 131509545 25 + 0.113 0.257 1.443
ENSG00000130714 E058 1.3810047 0.2136663306 0.2201495219 0.506961458 9 131509546 131509742 197 + 0.203 0.450 1.612
ENSG00000130714 E059 6.2991898 0.0024431827 0.9059774668 0.970003313 9 131509743 131509808 66 + 0.841 0.861 0.075
ENSG00000130714 E060 1.2722453 0.4910737929 0.0731140222 0.274720055 9 131509809 131509902 94 + 0.000 0.480 14.849
ENSG00000130714 E061 10.6072132 0.0149201885 0.8983595194 0.966606598 9 131509903 131509996 94 + 1.057 1.053 -0.014
ENSG00000130714 E062 4.1104015 0.0039114292 0.1277400870 0.378899733 9 131509997 131510062 66 + 0.565 0.767 0.858
ENSG00000130714 E063 4.2420730 0.0034316728 0.0431075601 0.202403171 9 131510063 131510141 79 + 0.528 0.796 1.143
ENSG00000130714 E064 2.9725047 0.0048359574 0.5016645596 0.761577289 9 131510142 131510182 41 + 0.528 0.626 0.443
ENSG00000130714 E065 3.1087410 0.0424820764 0.2720703852 0.565902297 9 131510183 131510259 77 + 0.488 0.666 0.806
ENSG00000130714 E066 10.8609656 0.0014340879 0.7856411893 0.917477306 9 131510260 131510356 97 + 1.045 1.075 0.110
ENSG00000130714 E067 7.3788756 0.0192549254 0.6418620507 0.848069276 9 131510357 131510386 30 + 0.940 0.895 -0.170
ENSG00000130714 E068 5.7653434 0.0756967837 0.4606080405 0.731979021 9 131510387 131510415 29 + 0.877 0.781 -0.371
ENSG00000130714 E069 0.3637832 0.2321014656 0.4306090529   9 131510500 131511336 837 + 0.203 0.080 -1.558
ENSG00000130714 E070 7.8813103 0.0080169136 0.7331314203 0.893897602 9 131511337 131511467 131 + 0.955 0.928 -0.103
ENSG00000130714 E071 0.3804973 0.0159446836 0.2071951912   9 131511468 131511472 5 + 0.000 0.206 13.835
ENSG00000130714 E072 0.6348960 0.0141827880 0.0580290204 0.241138546 9 131511473 131511574 102 + 0.000 0.303 14.444
ENSG00000130714 E073 0.6348960 0.0141827880 0.0580290204 0.241138546 9 131511575 131511742 168 + 0.000 0.303 14.444
ENSG00000130714 E074 2.5017487 0.0353660961 0.0711590076 0.270345708 9 131511743 131511967 225 + 0.340 0.626 1.443
ENSG00000130714 E075 1.2595923 0.0640174281 0.0454877619 0.208599349 9 131511968 131512040 73 + 0.113 0.450 2.613
ENSG00000130714 E076 8.2878332 0.0043970291 0.4808153616 0.746046417 9 131512041 131512136 96 + 0.910 0.986 0.284
ENSG00000130714 E077 7.0362515 0.0245042997 0.8256536393 0.936879161 9 131513239 131513331 93 + 0.877 0.906 0.113
ENSG00000130714 E078 7.8568071 0.0018010609 0.2695938277 0.563270842 9 131515426 131515522 97 + 0.996 0.895 -0.377
ENSG00000130714 E079 0.0000000       9 131516608 131516720 113 +      
ENSG00000130714 E080 0.3804973 0.0159446836 0.2071951912   9 131516721 131517219 499 + 0.000 0.206 13.835
ENSG00000130714 E081 0.0000000       9 131517993 131517999 7 +      
ENSG00000130714 E082 0.0000000       9 131518000 131518056 57 +      
ENSG00000130714 E083 0.0000000       9 131518057 131518291 235 +      
ENSG00000130714 E084 0.0000000       9 131518292 131518323 32 +      
ENSG00000130714 E085 0.0000000       9 131518324 131518353 30 +      
ENSG00000130714 E086 0.0000000       9 131518431 131518444 14 +      
ENSG00000130714 E087 7.1180170 0.0021380317 0.2067519483 0.490385966 9 131518445 131518537 93 + 0.969 0.848 -0.458
ENSG00000130714 E088 0.3720642 0.0169619487 0.8656981889   9 131518698 131518727 30 + 0.113 0.147 0.443
ENSG00000130714 E089 0.3719991 0.0169238182 0.8655059740   9 131518728 131518767 40 + 0.113 0.147 0.443
ENSG00000130714 E090 0.6101607 0.0228027171 0.3748384901 0.662533235 9 131518768 131518836 69 + 0.277 0.147 -1.142
ENSG00000130714 E091 11.2039754 0.0012252167 0.5837143831 0.814816149 9 131518837 131518957 121 + 1.100 1.060 -0.142
ENSG00000130714 E092 0.1272623 0.0123950271 0.8111101371   9 131519084 131519388 305 + 0.000 0.080 12.447
ENSG00000130714 E093 6.2914850 0.0026791074 0.9053043162 0.969706923 9 131519389 131519393 5 + 0.841 0.861 0.075
ENSG00000130714 E094 11.8344708 0.0033731331 0.9080119179 0.970698594 9 131519394 131519486 93 + 1.100 1.097 -0.010
ENSG00000130714 E095 13.2692488 0.0019191826 0.2645382940 0.557698798 9 131520080 131520193 114 + 1.192 1.111 -0.289
ENSG00000130714 E096 0.8708855 0.0168303185 0.5336003176 0.784067553 9 131520194 131520769 576 + 0.202 0.303 0.765
ENSG00000130714 E097 0.0000000       9 131521105 131521345 241 +      
ENSG00000130714 E098 14.4123696 0.0009849436 0.6847991175 0.869607167 9 131521346 131521472 127 + 1.192 1.168 -0.084
ENSG00000130714 E099 0.0000000       9 131521980 131522046 67 +      
ENSG00000130714 E100 7.9666329 0.0018130538 0.1351782192 0.390859490 9 131522047 131522201 155 + 1.021 0.884 -0.513
ENSG00000130714 E101 0.0000000       9 131522202 131522224 23 +      
ENSG00000130714 E102 0.3804973 0.0159446836 0.2071951912   9 131522225 131522533 309 + 0.000 0.206 13.835
ENSG00000130714 E103 1.5065987 0.0087813380 0.0824082914 0.295617478 9 131522932 131522938 7 + 0.202 0.480 1.765
ENSG00000130714 E104 23.7766850 0.0005950253 0.1336974669 0.388598681 9 131522939 131523170 232 + 1.320 1.419 0.342
ENSG00000130714 E105 21.4596823 0.0007739305 0.9625151013 0.991861930 9 131523171 131523317 147 + 1.338 1.342 0.014
ENSG00000130714 E106 10.1138126 0.0023849660 0.9740498460 0.995387733 9 131523318 131523346 29 + 1.033 1.037 0.013
ENSG00000130714 E107 7.8049748 0.0023273662 0.2725869874 0.566256079 9 131523347 131523352 6 + 0.859 0.977 0.443
ENSG00000130714 E108 18.9467892 0.0048513059 0.1376602415 0.394999001 9 131523353 131523462 110 + 1.216 1.330 0.401
ENSG00000130714 E109 20.7675051 0.0007572813 0.4925927148 0.754714490 9 131523463 131523806 344 + 1.295 1.346 0.180

Help

Please Click HERE to learn more details about the results from DEXseq.