ENSG00000131626

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000253925 ENSG00000131626 No_inf pgKDN_inf PPFIA1 protein_coding protein_coding 20.37543 22.90897 16.52348 2.787362 0.4630098 -0.471152 1.635001 2.6044805 1.7634154 1.5103034 1.7634154 -0.55999381 0.08205000 0.105675 0.113150 0.007475 0.834142069 0.000300858 FALSE TRUE
ENST00000389547 ENSG00000131626 No_inf pgKDN_inf PPFIA1 protein_coding protein_coding 20.37543 22.90897 16.52348 2.787362 0.4630098 -0.471152 1.876889 0.8808185 1.4284567 0.4346261 0.8308484 0.69131837 0.09309167 0.042275 0.083025 0.040750 0.987524588 0.000300858 FALSE TRUE
ENST00000527612 ENSG00000131626 No_inf pgKDN_inf PPFIA1 protein_coding retained_intron 20.37543 22.90897 16.52348 2.787362 0.4630098 -0.471152 1.441154 3.1414110 0.8320605 2.3445550 0.2930084 -1.90400212 0.05866667 0.111675 0.049475 -0.062200 0.999954378 0.000300858   FALSE
ENST00000532024 ENSG00000131626 No_inf pgKDN_inf PPFIA1 protein_coding protein_coding 20.37543 22.90897 16.52348 2.787362 0.4630098 -0.471152 1.800608 3.1967122 0.0000000 0.7256631 0.0000000 -8.32495105 0.08102500 0.147225 0.000000 -0.147225 0.000300858 0.000300858 FALSE FALSE
MSTRG.5092.2 ENSG00000131626 No_inf pgKDN_inf PPFIA1 protein_coding   20.37543 22.90897 16.52348 2.787362 0.4630098 -0.471152 7.288788 6.7909406 6.9496257 1.0880243 2.2250444 0.03327542 0.36989167 0.312625 0.419000 0.106375 0.850475307 0.000300858 FALSE TRUE
MSTRG.5092.9 ENSG00000131626 No_inf pgKDN_inf PPFIA1 protein_coding   20.37543 22.90897 16.52348 2.787362 0.4630098 -0.471152 2.811451 2.5258124 3.5927737 0.9244774 1.2082142 0.50666001 0.15101667 0.125825 0.216125 0.090300 0.858601216 0.000300858 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000131626 E001 0.0000000       11 70270690 70270701 12 +      
ENSG00000131626 E002 0.5913057 0.0150170362 0.0157315447 0.108554904 11 70270702 70270716 15 + 0.358 0.000 -12.212
ENSG00000131626 E003 1.5882248 0.0086300778 0.6614053839 0.858723622 11 70270717 70270772 56 + 0.446 0.381 -0.351
ENSG00000131626 E004 3.6598209 0.0046722678 0.3323537182 0.624483188 11 70270773 70270914 142 + 0.728 0.607 -0.516
ENSG00000131626 E005 1.3969929 0.0110457314 0.0004030869 0.007352076 11 70271220 70271319 100 + 0.000 0.553 14.883
ENSG00000131626 E006 0.7427412 0.0140812976 0.4797853132 0.745362246 11 70271907 70271921 15 + 0.179 0.287 0.872
ENSG00000131626 E007 1.8762693 0.0072519135 0.0271984437 0.153309221 11 70271922 70271990 69 + 0.247 0.581 1.872
ENSG00000131626 E008 1.5133961 0.0126534193 0.0034532674 0.038346412 11 70271991 70272013 23 + 0.099 0.553 3.331
ENSG00000131626 E009 3.8719070 0.0373221443 0.0107692910 0.084341058 11 70272014 70272172 159 + 0.446 0.821 1.649
ENSG00000131626 E010 5.2448754 0.0028260196 0.2916639896 0.585124236 11 70272173 70272227 55 + 0.854 0.736 -0.465
ENSG00000131626 E011 11.3339763 0.0015215994 0.1153373462 0.357979193 11 70272228 70272436 209 + 1.156 1.025 -0.471
ENSG00000131626 E012 0.1272623 0.0123106859 0.5896576554   11 70322397 70322554 158 + 0.000 0.091 11.740
ENSG00000131626 E013 5.4061929 0.0027155199 0.7680898113 0.910244905 11 70324402 70324503 102 + 0.787 0.821 0.135
ENSG00000131626 E014 1.2521078 0.0110955721 0.0716694196 0.271314556 11 70324847 70325011 165 + 0.179 0.458 1.872
ENSG00000131626 E015 5.9813449 0.0027101258 0.4582136176 0.730150595 11 70325500 70325574 75 + 0.884 0.805 -0.305
ENSG00000131626 E016 9.7762423 0.0014030982 0.3924862262 0.677464341 11 70326262 70326343 82 + 1.070 0.995 -0.273
ENSG00000131626 E017 5.2535923 0.0028190395 0.4524968062 0.725679570 11 70326344 70326363 20 + 0.838 0.755 -0.330
ENSG00000131626 E018 18.2708638 0.0010966097 0.8806197706 0.959793856 11 70326597 70326818 222 + 1.288 1.279 -0.032
ENSG00000131626 E019 0.0000000       11 70327554 70327714 161 +      
ENSG00000131626 E020 0.7523083 0.0140877159 0.1161323978 0.359288977 11 70329893 70330172 280 + 0.099 0.337 2.194
ENSG00000131626 E021 16.1320007 0.0009419302 0.2206624666 0.507603368 11 70330173 70330319 147 + 1.277 1.191 -0.304
ENSG00000131626 E022 14.0630495 0.0010117655 0.4401497539 0.715915342 11 70331960 70332094 135 + 1.207 1.150 -0.204
ENSG00000131626 E023 0.0000000       11 70333022 70333096 75 +      
ENSG00000131626 E024 12.4982595 0.0242757903 0.9630608278 0.992132328 11 70333470 70333553 84 + 1.131 1.127 -0.015
ENSG00000131626 E025 0.0000000       11 70334352 70334632 281 +      
ENSG00000131626 E026 12.6292304 0.0037329005 0.9845349344 0.998832007 11 70335563 70335612 50 + 1.132 1.135 0.012
ENSG00000131626 E027 12.9994177 0.0011180366 0.9329813641 0.980621176 11 70335613 70335694 82 + 1.148 1.142 -0.020
ENSG00000131626 E028 6.7872676 0.0205882397 0.0293349284 0.160869347 11 70337365 70337396 32 + 1.009 0.755 -0.976
ENSG00000131626 E029 9.4901713 0.0255209035 0.1059204812 0.340772801 11 70337397 70337427 31 + 1.106 0.929 -0.652
ENSG00000131626 E030 9.7526936 0.0014148675 0.1279134252 0.379059488 11 70338374 70338434 61 + 1.097 0.963 -0.491
ENSG00000131626 E031 4.2839479 0.0075574169 0.6659979565 0.861079559 11 70338435 70338453 19 + 0.749 0.697 -0.211
ENSG00000131626 E032 10.4013305 0.0092073739 0.4908480987 0.753337889 11 70339171 70339306 136 + 1.089 1.025 -0.231
ENSG00000131626 E033 0.0000000       11 70339307 70339311 5 +      
ENSG00000131626 E034 0.0000000       11 70340977 70340995 19 +      
ENSG00000131626 E035 0.0000000       11 70340996 70341006 11 +      
ENSG00000131626 E036 0.0000000       11 70341007 70341097 91 +      
ENSG00000131626 E037 0.4787723 0.0212911762 0.2788451805   11 70341873 70342143 271 + 0.247 0.091 -1.713
ENSG00000131626 E038 10.1945754 0.0353103815 0.7624503242 0.907301806 11 70343669 70343750 82 + 1.030 1.062 0.115
ENSG00000131626 E039 13.8888693 0.0009870063 0.5844066456 0.815276067 11 70343751 70343892 142 + 1.148 1.191 0.153
ENSG00000131626 E040 0.0000000       11 70345915 70346009 95 +      
ENSG00000131626 E041 21.3375113 0.0008645172 0.0275748709 0.154886803 11 70348189 70348374 186 + 1.416 1.279 -0.476
ENSG00000131626 E042 8.6932157 0.0044205268 0.7935213542 0.921262289 11 70348375 70348420 46 + 0.998 0.974 -0.088
ENSG00000131626 E043 9.4383444 0.0015560902 0.9517998428 0.987864384 11 70349923 70350039 117 + 1.020 1.016 -0.016
ENSG00000131626 E044 1.8208168 0.0085829344 0.3473224597 0.637918935 11 70350994 70351023 30 + 0.519 0.381 -0.713
ENSG00000131626 E045 1.4982557 0.2653813975 0.3322211093 0.624386288 11 70354203 70354300 98 + 0.247 0.493 1.458
ENSG00000131626 E046 6.7172233 0.0054149467 0.4718789398 0.739147268 11 70354301 70354321 21 + 0.925 0.850 -0.286
ENSG00000131626 E047 13.3463750 0.0029832008 0.7098811636 0.882657608 11 70354322 70354452 131 + 1.171 1.142 -0.102
ENSG00000131626 E048 7.3850702 0.0026153192 0.5024150095 0.762079228 11 70355639 70355703 65 + 0.884 0.952 0.259
ENSG00000131626 E049 10.9547672 0.0013043556 0.3461311607 0.636989048 11 70355704 70355811 108 + 1.030 1.112 0.296
ENSG00000131626 E050 12.3853628 0.0011335289 0.8693342101 0.955077636 11 70356161 70356254 94 + 1.132 1.120 -0.043
ENSG00000131626 E051 12.8735690 0.0406825788 0.7186793086 0.886761910 11 70362095 70362134 40 + 1.164 1.120 -0.157
ENSG00000131626 E052 12.3942973 0.0032651453 0.8732566980 0.956755983 11 70362135 70362176 42 + 1.132 1.120 -0.043
ENSG00000131626 E053 23.4423471 0.0006083164 0.9878707199 0.999865247 11 70362288 70362488 201 + 1.385 1.388 0.008
ENSG00000131626 E054 0.9818431 0.0121902584 0.8975410223 0.966215465 11 70362489 70362795 307 + 0.306 0.287 -0.128
ENSG00000131626 E055 0.3816610 0.0239973727 0.1232391269   11 70364342 70365372 1031 + 0.000 0.231 13.195
ENSG00000131626 E056 0.0000000       11 70365373 70365435 63 +      
ENSG00000131626 E057 0.4910456 0.1063118091 0.9346029542   11 70365436 70365940 505 + 0.180 0.167 -0.129
ENSG00000131626 E058 0.1265070 0.0122619327 0.5896973735   11 70365941 70365967 27 + 0.000 0.091 11.740
ENSG00000131626 E059 0.0000000       11 70367506 70367629 124 +      
ENSG00000131626 E060 1.1082887 0.0109243140 0.8461556205 0.945384733 11 70371327 70372211 885 + 0.306 0.337 0.193
ENSG00000131626 E061 0.3559794 0.0308643491 0.0882682430   11 70372212 70372214 3 + 0.247 0.000 -14.174
ENSG00000131626 E062 2.2102154 0.0996694235 0.8585015409 0.950660523 11 70372215 70372390 176 + 0.519 0.492 -0.129
ENSG00000131626 E063 0.0000000       11 70372477 70372574 98 +      
ENSG00000131626 E064 0.0000000       11 70374660 70374829 170 +      
ENSG00000131626 E065 0.0000000       11 70374918 70375093 176 +      
ENSG00000131626 E066 11.2305112 0.0199475056 0.2725112461 0.566220212 11 70376532 70376600 69 + 1.140 1.035 -0.380
ENSG00000131626 E067 17.4186268 0.0120087069 0.9342589309 0.981067175 11 70378030 70378077 48 + 1.259 1.268 0.034
ENSG00000131626 E068 24.7409605 0.0005797836 0.1589350004 0.426064929 11 70378078 70378195 118 + 1.362 1.446 0.291
ENSG00000131626 E069 1.9641314 0.2844151772 0.7940437129 0.921463844 11 70378196 70378580 385 + 0.445 0.492 0.237
ENSG00000131626 E070 13.7695262 0.0178325989 0.5685174121 0.805943723 11 70382088 70382158 71 + 1.140 1.191 0.182
ENSG00000131626 E071 143.9260852 0.0002731083 0.0030514750 0.034927472 11 70383003 70385312 2310 + 2.121 2.190 0.229

Help

Please Click HERE to learn more details about the results from DEXseq.