ENSG00000132024

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000318003 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding protein_coding 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 3.7244709 4.8138757 2.1531510 0.4140203 0.7302271 -1.1570584 0.38481667 0.386800 0.292075 -0.094725 0.83537059 0.01246378 FALSE TRUE
ENST00000587508 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding protein_coding 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.4984685 0.8269810 0.0000000 0.5681585 0.0000000 -6.3871229 0.04377500 0.062275 0.000000 -0.062275 0.65171959 0.01246378 FALSE TRUE
ENST00000589224 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding retained_intron 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.5163929 0.7381683 0.3907383 0.7381683 0.3907383 -0.9007025 0.05294167 0.052350 0.058775 0.006425 0.96949746 0.01246378 FALSE TRUE
ENST00000589606 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding protein_coding 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.2295720 0.0000000 0.6887161 0.0000000 0.6887161 6.1266345 0.03774167 0.000000 0.113225 0.113225 0.82089005 0.01246378 FALSE TRUE
ENST00000589679 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding retained_intron 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.5994844 1.6632571 0.0000000 0.3446020 0.0000000 -7.3865153 0.05070000 0.138125 0.000000 -0.138125 0.01246378 0.01246378 FALSE FALSE
ENST00000679937 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding retained_intron 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.1802667 0.0000000 0.5408000 0.0000000 0.5408000 5.7834567 0.02964167 0.000000 0.088925 0.088925 0.81715726 0.01246378 FALSE TRUE
ENST00000681428 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding retained_intron 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.1764855 0.0000000 0.5294566 0.0000000 0.5294566 5.7534349 0.02348333 0.000000 0.070450 0.070450 0.80499559 0.01246378 FALSE TRUE
ENST00000681846 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding retained_intron 9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.2348992 0.7046976 0.0000000 0.4400122 0.0000000 -6.1592610 0.01878333 0.056350 0.000000 -0.056350 0.65454549 0.01246378 TRUE TRUE
MSTRG.14653.10 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding   9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 0.6147960 0.9746421 0.3637249 0.4109428 0.2207343 -1.3976228 0.06189167 0.081025 0.049975 -0.031050 0.86192665 0.01246378 TRUE TRUE
MSTRG.14653.7 ENSG00000132024 No_inf pgKDN_inf CC2D1A protein_coding   9.483462 12.45362 7.137241 0.7096901 0.4876805 -0.8022645 1.2462422 0.6837963 1.8631862 0.4088749 0.9832157 1.4329104 0.14551667 0.057825 0.237450 0.179625 0.62799380 0.01246378 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000132024 E001 0.0000000       19 13906201 13906202 2 +      
ENSG00000132024 E002 0.0000000       19 13906203 13906283 81 +      
ENSG00000132024 E003 0.0000000       19 13906284 13906441 158 +      
ENSG00000132024 E004 0.7245467 0.014378667 0.140726186 0.39901739 19 13906442 13906501 60 + 0.355 0.140 -1.738
ENSG00000132024 E005 2.8255673 0.088894521 0.552162156 0.79573514 19 13909823 13909958 136 + 0.619 0.540 -0.359
ENSG00000132024 E006 4.7169769 0.003283918 0.507710300 0.76608871 19 13912323 13912438 116 + 0.681 0.773 0.378
ENSG00000132024 E007 4.4454250 0.003653696 0.788106327 0.91874477 19 13912528 13912593 66 + 0.734 0.713 -0.086
ENSG00000132024 E008 2.8091130 0.006108603 0.134823075 0.39034813 19 13913168 13913252 85 + 0.681 0.489 -0.863
ENSG00000132024 E009 1.4662231 0.009569777 0.354304411 0.64409647 19 13913253 13913302 50 + 0.462 0.330 -0.738
ENSG00000132024 E010 7.0609126 0.017412628 0.639979254 0.84699257 19 13913404 13913638 235 + 0.845 0.914 0.262
ENSG00000132024 E011 0.4995474 0.037291633 0.652210052   19 13915291 13916547 1257 + 0.119 0.196 0.847
ENSG00000132024 E012 1.8692218 0.139240211 0.542779726 0.78995849 19 13918070 13918111 42 + 0.355 0.489 0.721
ENSG00000132024 E013 2.3487196 0.018949499 0.982667019 0.99869026 19 13918112 13918153 42 + 0.507 0.515 0.040
ENSG00000132024 E014 2.9478554 0.007942199 0.364799465 0.65332708 19 13918154 13918194 41 + 0.651 0.540 -0.497
ENSG00000132024 E015 1.8248405 0.018931605 0.075713458 0.28113801 19 13918504 13918506 3 + 0.585 0.330 -1.323
ENSG00000132024 E016 2.9335724 0.013988788 0.091276999 0.31384251 19 13918507 13918576 70 + 0.708 0.489 -0.979
ENSG00000132024 E017 1.1087319 0.079125780 0.655156249 0.85537116 19 13918746 13918749 4 + 0.355 0.289 -0.417
ENSG00000132024 E018 3.0764829 0.004758610 0.459331617 0.73104747 19 13918750 13918817 68 + 0.651 0.563 -0.390
ENSG00000132024 E019 6.8237726 0.028342815 0.372782987 0.66058874 19 13918912 13919042 131 + 0.804 0.914 0.423
ENSG00000132024 E020 4.6081946 0.003100163 0.210466082 0.49491119 19 13919130 13919202 73 + 0.619 0.787 0.695
ENSG00000132024 E021 1.3958906 0.010677201 0.003616378 0.03964585 19 13919694 13919817 124 + 0.000 0.489 14.540
ENSG00000132024 E022 2.3690791 0.006112379 0.339630638 0.63133793 19 13919818 13919826 9 + 0.412 0.563 0.748
ENSG00000132024 E023 4.7251661 0.003113013 0.313441514 0.60658391 19 13919827 13919939 113 + 0.651 0.787 0.558
ENSG00000132024 E024 1.2596918 0.011404147 0.056957557 0.23848683 19 13919940 13919951 12 + 0.119 0.432 2.432
ENSG00000132024 E025 0.8708240 0.163645132 0.685848732 0.87025700 19 13919952 13920276 325 + 0.213 0.290 0.584
ENSG00000132024 E026 0.7342435 0.013576468 0.511463480 0.76864889 19 13920277 13920401 125 + 0.290 0.196 -0.738
ENSG00000132024 E027 0.2458395 0.016657162 0.671451483   19 13920402 13920403 2 + 0.119 0.075 -0.738
ENSG00000132024 E028 0.9897445 0.244957182 0.896574918 0.96596309 19 13920404 13920501 98 + 0.290 0.290 -0.001
ENSG00000132024 E029 1.7512085 0.028689706 0.228286454 0.51680665 19 13920502 13920556 55 + 0.290 0.489 1.137
ENSG00000132024 E030 2.9896891 0.004867177 0.221919066 0.50914510 19 13920557 13920559 3 + 0.462 0.645 0.847
ENSG00000132024 E031 6.1771297 0.002354644 0.850387988 0.94698205 19 13920560 13920668 109 + 0.845 0.837 -0.032
ENSG00000132024 E032 8.7785922 0.003451330 0.976039616 0.99600110 19 13920750 13920922 173 + 0.965 0.979 0.054
ENSG00000132024 E033 2.0313544 0.156675175 0.002319721 0.02851877 19 13920923 13923179 2257 + 0.000 0.606 15.080
ENSG00000132024 E034 0.1271363 0.012687638 1.000000000   19 13923328 13923332 5 + 0.000 0.075 11.080
ENSG00000132024 E035 7.3907068 0.008712252 0.444341094 0.71897433 19 13923333 13923455 123 + 0.950 0.883 -0.253
ENSG00000132024 E036 4.4469682 0.084079300 0.927953648 0.97862297 19 13923548 13923578 31 + 0.708 0.729 0.086
ENSG00000132024 E037 4.3108361 0.003903479 0.693209515 0.87469983 19 13923579 13923606 28 + 0.734 0.697 -0.153
ENSG00000132024 E038 5.4154846 0.038622879 0.683275679 0.86880592 19 13923695 13923768 74 + 0.825 0.773 -0.206
ENSG00000132024 E039 4.3031948 0.003600122 0.462817927 0.73298987 19 13923769 13923811 43 + 0.759 0.680 -0.323
ENSG00000132024 E040 4.4344171 0.003096530 0.543966874 0.79061953 19 13926517 13926590 74 + 0.759 0.697 -0.252
ENSG00000132024 E041 3.4476240 0.006452145 0.504058064 0.76334821 19 13926667 13926725 59 + 0.681 0.606 -0.323
ENSG00000132024 E042 2.9689480 0.109924893 0.848649232 0.94638312 19 13926821 13926872 52 + 0.585 0.585 -0.002
ENSG00000132024 E043 5.0686773 0.009609207 0.998919268 1.00000000 19 13926978 13927077 100 + 0.759 0.773 0.056
ENSG00000132024 E044 1.0147640 0.011637122 0.016405714 0.11136888 19 13927078 13927174 97 + 0.000 0.401 14.080
ENSG00000132024 E045 7.6317696 0.003093220 0.405624167 0.68833366 19 13927175 13927265 91 + 0.965 0.893 -0.268
ENSG00000132024 E046 4.8606069 0.056389602 0.231663159 0.52036653 19 13927266 13927892 627 + 0.619 0.813 0.799
ENSG00000132024 E047 9.8826205 0.001381927 0.886786632 0.96213985 19 13927893 13928030 138 + 1.020 1.020 -0.001
ENSG00000132024 E048 0.1272623 0.012395942 1.000000000   19 13928031 13928123 93 + 0.000 0.075 11.080
ENSG00000132024 E049 2.7375891 0.005401606 0.351646859 0.64188316 19 13928124 13928126 3 + 0.462 0.606 0.677
ENSG00000132024 E050 5.0875699 0.003000311 0.500477372 0.76056301 19 13928127 13928188 62 + 0.708 0.800 0.369
ENSG00000132024 E051 6.0470284 0.002520924 0.763559615 0.90783237 19 13929379 13929442 64 + 0.845 0.825 -0.079
ENSG00000132024 E052 9.2942966 0.038806687 0.707138659 0.88116926 19 13929534 13929642 109 + 0.950 1.020 0.262
ENSG00000132024 E053 3.2246404 0.069315422 0.565276351 0.80418915 19 13929643 13929644 2 + 0.547 0.645 0.432
ENSG00000132024 E054 3.3322674 0.104575257 0.913802348 0.97288709 19 13929645 13929660 16 + 0.619 0.626 0.029
ENSG00000132024 E055 4.8108902 0.137604775 0.946979613 0.98589708 19 13930078 13930154 77 + 0.759 0.744 -0.059
ENSG00000132024 E056 4.0409500 0.004248029 0.085879509 0.30342778 19 13930242 13930289 48 + 0.804 0.606 -0.825
ENSG00000132024 E057 21.5900233 0.034009640 0.490258715 0.75291476 19 13930375 13930879 505 + 1.370 1.316 -0.187

Help

Please Click HERE to learn more details about the results from DEXseq.