ENSG00000132466

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000509867 ENSG00000132466 No_inf pgKDN_inf ANKRD17 protein_coding protein_coding 22.70589 19.91959 24.08091 1.597557 0.3227794 0.273577 2.414313 2.3623362 2.336890 0.6046524 0.3653000 -0.01555844 0.10552500 0.114275 0.097475 -0.016800 0.93437731 0.01195657 FALSE TRUE
ENST00000513908 ENSG00000132466 No_inf pgKDN_inf ANKRD17 protein_coding retained_intron 22.70589 19.91959 24.08091 1.597557 0.3227794 0.273577 1.298976 3.8969280 0.000000 1.3579890 0.0000000 -8.60989085 0.06123333 0.183700 0.000000 -0.183700 0.01195657 0.01195657   FALSE
ENST00000558247 ENSG00000132466 No_inf pgKDN_inf ANKRD17 protein_coding protein_coding 22.70589 19.91959 24.08091 1.597557 0.3227794 0.273577 2.117497 0.9887574 3.422370 0.3879515 0.7155186 1.78099886 0.09233333 0.053275 0.142175 0.088900 0.48158990 0.01195657 FALSE TRUE
ENST00000560507 ENSG00000132466 No_inf pgKDN_inf ANKRD17 protein_coding protein_coding_CDS_not_defined 22.70589 19.91959 24.08091 1.597557 0.3227794 0.273577 1.394660 0.1620602 1.365112 0.1620602 0.4521034 2.99856426 0.05835833 0.007975 0.056575 0.048600 0.23702763 0.01195657   FALSE
MSTRG.21893.3 ENSG00000132466 No_inf pgKDN_inf ANKRD17 protein_coding   22.70589 19.91959 24.08091 1.597557 0.3227794 0.273577 5.959446 4.2484023 7.230082 0.7690226 0.7240372 0.76569377 0.26440833 0.225500 0.300250 0.074750 0.80371536 0.01195657 FALSE TRUE
MSTRG.21893.4 ENSG00000132466 No_inf pgKDN_inf ANKRD17 protein_coding   22.70589 19.91959 24.08091 1.597557 0.3227794 0.273577 6.609662 6.4916130 7.071543 0.7120533 0.8779481 0.12326606 0.29291667 0.326950 0.293725 -0.033225 0.88476415 0.01195657 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000132466 E001 0.8371452 0.0239945629 0.1103954898 0.348598967 4 73073376 73074212 837 - 0.356 0.108 -2.166
ENSG00000132466 E002 3.1850059 0.0050554221 0.4762797490 0.742826176 4 73074213 73074760 548 - 0.574 0.670 0.419
ENSG00000132466 E003 1.0917305 0.0139763788 0.5627589340 0.802449248 4 73074761 73074807 47 - 0.356 0.267 -0.581
ENSG00000132466 E004 20.2776068 0.0159918106 0.5545377867 0.797286227 4 73074808 73075237 430 - 1.302 1.352 0.175
ENSG00000132466 E005 38.3847342 0.0026908691 0.1703142570 0.442515133 4 73075238 73075685 448 - 1.622 1.554 -0.231
ENSG00000132466 E006 101.0162759 0.0001851724 0.2891340051 0.582788467 4 73075686 73076290 605 - 1.991 2.024 0.111
ENSG00000132466 E007 30.6901495 0.0004675008 0.1526917264 0.416849340 4 73076940 73077104 165 - 1.462 1.540 0.269
ENSG00000132466 E008 7.4713211 0.0025040084 0.3342110273 0.626110246 4 73077355 73077368 14 - 0.879 0.977 0.372
ENSG00000132466 E009 22.9817375 0.0007097280 0.2259039065 0.513785160 4 73077369 73077533 165 - 1.342 1.418 0.265
ENSG00000132466 E010 29.3579075 0.0025133808 0.8504919588 0.946992169 4 73078642 73078890 249 - 1.483 1.475 -0.027
ENSG00000132466 E011 0.0000000       4 73080721 73080810 90 -      
ENSG00000132466 E012 21.3015774 0.0007194728 0.7409121426 0.897148601 4 73085249 73085446 198 - 1.354 1.336 -0.064
ENSG00000132466 E013 147.4347561 0.0001384738 0.2912237579 0.584767765 4 73090667 73092300 1634 - 2.157 2.184 0.091
ENSG00000132466 E014 23.2536732 0.0005958061 0.7661297389 0.909120621 4 73094079 73094228 150 - 1.389 1.374 -0.053
ENSG00000132466 E015 18.7947475 0.0008558038 0.4320465615 0.709539882 4 73097117 73097272 156 - 1.269 1.324 0.194
ENSG00000132466 E016 0.1265070 0.0121968685 0.4029617855   4 73097273 73097342 70 - 0.000 0.108 10.639
ENSG00000132466 E017 41.5266775 0.0148951627 0.0621470006 0.250378002 4 73098073 73098520 448 - 1.566 1.691 0.428
ENSG00000132466 E018 1.3122394 0.0148441653 0.0860321753 0.303807984 4 73100861 73101173 313 - 0.463 0.195 -1.751
ENSG00000132466 E019 15.6522613 0.0009483716 0.0002887033 0.005631436 4 73102376 73102462 87 - 1.079 1.347 0.947
ENSG00000132466 E020 13.7336364 0.0145920904 0.0788777528 0.287910186 4 73102463 73102547 85 - 1.087 1.248 0.574
ENSG00000132466 E021 0.6262716 0.1104705873 0.1210757627 0.368224889 4 73102548 73102779 232 - 0.083 0.329 2.419
ENSG00000132466 E022 0.1186381 0.0117504279 0.7140299624   4 73104003 73104080 78 - 0.083 0.000 -11.022
ENSG00000132466 E023 1.4712560 0.1846064228 0.6598210272 0.858007468 4 73113084 73113311 228 - 0.356 0.431 0.418
ENSG00000132466 E024 13.9931572 0.0010164584 0.7934180371 0.921213477 4 73113792 73113908 117 - 1.181 1.164 -0.062
ENSG00000132466 E025 11.5210472 0.0426866434 0.3030561255 0.596207517 4 73115821 73115916 96 - 1.040 1.155 0.418
ENSG00000132466 E026 17.1882670 0.0174873066 0.9471024510 0.985929813 4 73118688 73118850 163 - 1.254 1.262 0.027
ENSG00000132466 E027 16.7998053 0.0058099399 0.8428342410 0.943767004 4 73120162 73120337 176 - 1.254 1.241 -0.045
ENSG00000132466 E028 16.9883181 0.0025706379 0.1276513889 0.378782461 4 73120881 73121094 214 - 1.298 1.188 -0.384
ENSG00000132466 E029 14.6183858 0.0009913206 0.0094457866 0.077482746 4 73121617 73121759 143 - 1.269 1.070 -0.708
ENSG00000132466 E030 5.7830222 0.0023406295 0.0240235648 0.141915328 4 73124913 73124915 3 - 0.925 0.670 -1.010
ENSG00000132466 E031 13.0478039 0.0010273095 0.0148938072 0.104631055 4 73124916 73125058 143 - 1.222 1.026 -0.703
ENSG00000132466 E032 8.7415023 0.0469309887 0.5430668630 0.790080214 4 73125201 73125312 112 - 1.022 0.937 -0.318
ENSG00000132466 E033 11.4849695 0.0078791748 0.6091814104 0.829956662 4 73135117 73135262 146 - 1.072 1.120 0.173
ENSG00000132466 E034 2.9405316 0.0060740021 0.4960206645 0.757042802 4 73135263 73135265 3 - 0.549 0.643 0.419
ENSG00000132466 E035 29.0689200 0.0036359636 0.4207828462 0.699953203 4 73139531 73140283 753 - 1.452 1.503 0.176
ENSG00000132466 E036 5.6080326 0.0221115707 0.9690996289 0.993641226 4 73141741 73141792 52 - 0.813 0.824 0.041
ENSG00000132466 E037 5.1760201 0.0141038723 0.0548323845 0.233256283 4 73141793 73141843 51 - 0.879 0.643 -0.950
ENSG00000132466 E038 10.7632053 0.0028973552 0.0812669758 0.292965248 4 73142242 73142385 144 - 1.130 0.977 -0.557
ENSG00000132466 E039 9.4729808 0.0015614827 0.4247460114 0.703959541 4 73142640 73142767 128 - 1.048 0.977 -0.259
ENSG00000132466 E040 6.8062212 0.0020925648 0.5814574783 0.813481488 4 73144745 73144832 88 - 0.914 0.859 -0.209
ENSG00000132466 E041 6.8948986 0.0281348219 0.2008913928 0.482956218 4 73146764 73146873 110 - 0.956 0.805 -0.581
ENSG00000132466 E042 8.5850586 0.0022387808 0.1197011107 0.365641619 4 73147241 73147432 192 - 1.039 0.892 -0.551
ENSG00000132466 E043 9.4265724 0.0104299887 0.1084076392 0.345356303 4 73148813 73149050 238 - 1.079 0.922 -0.581
ENSG00000132466 E044 4.7190207 0.0932843616 0.4877963951 0.751227151 4 73151430 73151524 95 - 0.798 0.696 -0.417
ENSG00000132466 E045 8.6135325 0.0030633169 0.2871274203 0.580497443 4 73153880 73154113 234 - 1.022 0.922 -0.372
ENSG00000132466 E046 7.0077452 0.0020492225 0.0649029396 0.256708356 4 73155631 73155778 148 - 0.976 0.785 -0.733
ENSG00000132466 E047 7.4109575 0.0063200808 0.4246157723 0.703830200 4 73156019 73156166 148 - 0.956 0.876 -0.305
ENSG00000132466 E048 4.0971116 0.0039797853 0.0489172161 0.217933350 4 73161192 73161348 157 - 0.799 0.550 -1.055
ENSG00000132466 E049 0.1186381 0.0117504279 0.7140299624   4 73168929 73169090 162 - 0.083 0.000 -11.022
ENSG00000132466 E050 4.5987686 0.0137664636 0.2988535857 0.591817427 4 73177380 73177533 154 - 0.799 0.670 -0.524
ENSG00000132466 E051 0.2537694 0.0159205732 0.1596982423   4 73222974 73223114 141 - 0.000 0.195 11.577
ENSG00000132466 E052 1.4796277 0.0131072191 0.2932257662 0.586765283 4 73258276 73258284 9 - 0.314 0.474 0.904
ENSG00000132466 E053 7.7440124 0.0018200569 0.1648583535 0.434323488 4 73258285 73258911 627 - 0.995 0.859 -0.514

Help

Please Click HERE to learn more details about the results from DEXseq.