ENSG00000132792

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000361383 ENSG00000132792 No_inf pgKDN_inf CTNNBL1 protein_coding protein_coding 38.90405 24.79675 43.94824 2.032512 5.278255 0.8254007 20.409431 13.847767 24.51542 0.2571266 2.075514 0.8235833 0.54989167 0.567400 0.601575 0.034175 0.9380034 0.0135537 FALSE TRUE
ENST00000373469 ENSG00000132792 No_inf pgKDN_inf CTNNBL1 protein_coding protein_coding 38.90405 24.79675 43.94824 2.032512 5.278255 0.8254007 2.291768 4.361483 0.00000 1.6875559 0.000000 -8.7719790 0.08395833 0.195275 0.000000 -0.195275 0.0135537 0.0135537 FALSE TRUE
ENST00000472237 ENSG00000132792 No_inf pgKDN_inf CTNNBL1 protein_coding protein_coding_CDS_not_defined 38.90405 24.79675 43.94824 2.032512 5.278255 0.8254007 1.262574 3.787723 0.00000 3.7877226 0.000000 -8.5689907 0.04264167 0.127925 0.000000 -0.127925 0.8243468 0.0135537 FALSE TRUE
ENST00000481674 ENSG00000132792 No_inf pgKDN_inf CTNNBL1 protein_coding protein_coding_CDS_not_defined 38.90405 24.79675 43.94824 2.032512 5.278255 0.8254007 14.097189 2.118921 18.42109 2.1189211 6.437600 3.1139472 0.30046667 0.079475 0.377050 0.297575 0.3517790 0.0135537 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000132792 E001 0.0000000       20 37693955 37694029 75 +      
ENSG00000132792 E002 0.0000000       20 37694030 37694031 2 +      
ENSG00000132792 E003 1.2265486 0.0110568411 0.609172148 0.82995666 20 37694032 37694061 30 + 0.309 0.388 0.474
ENSG00000132792 E004 7.0357003 0.0020401372 0.378175098 0.66526604 20 37694062 37694152 91 + 0.939 0.849 -0.343
ENSG00000132792 E005 0.6072630 0.0148899830 0.931532063 0.97999201 20 37694927 37695001 75 + 0.210 0.198 -0.111
ENSG00000132792 E006 0.4882780 0.0161693402 0.746690905   20 37695002 37695033 32 + 0.151 0.198 0.474
ENSG00000132792 E007 0.0000000       20 37727302 37727402 101 +      
ENSG00000132792 E008 23.2225775 0.0012808362 0.652676726 0.85376213 20 37732879 37733067 189 + 1.392 1.366 -0.092
ENSG00000132792 E009 18.9577038 0.0021683885 0.006004025 0.05648371 20 37737378 37737484 107 + 1.370 1.180 -0.666
ENSG00000132792 E010 0.0000000       20 37744645 37744713 69 +      
ENSG00000132792 E011 16.8912682 0.0021908872 0.003801654 0.04099949 20 37746468 37746607 140 + 1.329 1.118 -0.748
ENSG00000132792 E012 0.0000000       20 37746608 37746609 2 +      
ENSG00000132792 E013 0.0000000       20 37746610 37746630 21 +      
ENSG00000132792 E014 0.0000000       20 37746631 37746647 17 +      
ENSG00000132792 E015 0.2536433 0.0160388195 0.149436170   20 37749851 37751130 1280 + 0.000 0.198 9.959
ENSG00000132792 E016 0.0000000       20 37751486 37751666 181 +      
ENSG00000132792 E017 0.0000000       20 37756291 37756391 101 +      
ENSG00000132792 E018 0.0000000       20 37757046 37757049 4 +      
ENSG00000132792 E019 5.8095530 0.0027418408 0.226306707 0.51433256 20 37757559 37757560 2 + 0.883 0.749 -0.526
ENSG00000132792 E020 5.8095530 0.0027418408 0.226306707 0.51433256 20 37757561 37757570 10 + 0.883 0.749 -0.526
ENSG00000132792 E021 10.9438379 0.0012922275 0.713390661 0.88450716 20 37757571 37757656 86 + 1.087 1.056 -0.111
ENSG00000132792 E022 14.6152525 0.0009745762 0.960120394 0.99083719 20 37765197 37765290 94 + 1.191 1.188 -0.011
ENSG00000132792 E023 14.1701656 0.0013641030 0.406802087 0.68940970 20 37767953 37768044 92 + 1.149 1.212 0.225
ENSG00000132792 E024 0.0000000       20 37777273 37777344 72 +      
ENSG00000132792 E025 14.7933912 0.0009990246 0.242781850 0.53243607 20 37777345 37777417 73 + 1.155 1.242 0.307
ENSG00000132792 E026 15.8706999 0.0015761914 0.326556219 0.61894396 20 37777654 37777712 59 + 1.191 1.263 0.252
ENSG00000132792 E027 26.7077486 0.0007130655 0.461197779 0.73208112 20 37779187 37779335 149 + 1.421 1.462 0.144
ENSG00000132792 E028 30.5023534 0.0017521629 0.351438369 0.64165138 20 37802867 37803048 182 + 1.472 1.523 0.173
ENSG00000132792 E029 0.0000000       20 37832248 37832345 98 +      
ENSG00000132792 E030 17.3758052 0.0008429492 0.102862920 0.33529607 20 37840102 37840199 98 + 1.208 1.320 0.393
ENSG00000132792 E031 0.0000000       20 37842254 37842338 85 +      
ENSG00000132792 E032 16.6194612 0.0145667799 0.436633068 0.71303382 20 37842339 37842419 81 + 1.214 1.276 0.219
ENSG00000132792 E033 0.0000000       20 37847858 37847891 34 +      
ENSG00000132792 E034 32.0745275 0.0004590972 0.531667166 0.78224996 20 37859899 37860036 138 + 1.502 1.534 0.110
ENSG00000132792 E035 21.4303270 0.0006721455 0.968696049 0.99364123 20 37860272 37860344 73 + 1.346 1.349 0.011
ENSG00000132792 E036 21.6733617 0.0007512369 0.929030915 0.97901132 20 37871925 37872129 205 + 1.354 1.349 -0.017

Help

Please Click HERE to learn more details about the results from DEXseq.