ENSG00000134759

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000358232 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding protein_coding 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 3.060787 2.138566 3.366399 1.237425 1.1667547 0.6521112 0.06022500 0.059025 0.053300 -0.005725 0.87580792 0.04710594 FALSE TRUE
ENST00000535093 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding protein_coding_CDS_not_defined 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 10.817777 6.337905 15.209301 1.324113 0.4864784 1.2615496 0.19894167 0.170450 0.234675 0.064225 0.69934899 0.04710594 FALSE FALSE
ENST00000540135 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding protein_coding_CDS_not_defined 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 4.482226 0.000000 4.192449 0.000000 1.4767934 8.7150863 0.07844167 0.000000 0.065725 0.065725 0.04710594 0.04710594 FALSE TRUE
ENST00000541294 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding retained_intron 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 2.212885 3.098535 1.477149 0.692763 0.5270221 -1.0636850 0.04773333 0.083875 0.022275 -0.061600 0.24073164 0.04710594 FALSE FALSE
ENST00000542050 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding protein_coding_CDS_not_defined 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 12.303626 11.461824 16.066949 2.481516 2.1986192 0.4868988 0.23671667 0.294025 0.243550 -0.050475 0.85320303 0.04710594 FALSE TRUE
ENST00000543439 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding protein_coding_CDS_not_defined 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 4.277911 2.001955 4.288976 1.247195 2.4767629 1.0953955 0.07894167 0.052075 0.066625 0.014550 1.00000000 0.04710594 FALSE FALSE
ENST00000543861 ENSG00000134759 No_inf pgKDN_inf ELP2 protein_coding protein_coding_CDS_not_defined 52.84288 37.99307 65.18938 2.772307 3.853476 0.7787423 9.064327 4.061631 10.766232 1.574756 1.3483868 1.4041742 0.16685000 0.113950 0.165050 0.051100 0.81038513 0.04710594 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000134759 E001 0.0000000       18 36129444 36129497 54 +      
ENSG00000134759 E002 0.0000000       18 36129880 36129890 11 +      
ENSG00000134759 E003 0.0000000       18 36129891 36129893 3 +      
ENSG00000134759 E004 0.0000000       18 36129894 36129894 1 +      
ENSG00000134759 E005 0.0000000       18 36129895 36129897 3 +      
ENSG00000134759 E006 0.0000000       18 36129898 36129898 1 +      
ENSG00000134759 E007 0.0000000       18 36129899 36129900 2 +      
ENSG00000134759 E008 0.0000000       18 36129901 36129901 1 +      
ENSG00000134759 E009 0.0000000       18 36129902 36129902 1 +      
ENSG00000134759 E010 0.4909846 0.0157520352 0.905120077   18 36129903 36129916 14 + 0.164 0.182 0.182
ENSG00000134759 E011 0.6178386 0.0142867440 0.563379564 0.80272904 18 36129917 36129919 3 + 0.164 0.251 0.767
ENSG00000134759 E012 0.9721838 0.0115862832 0.592251921 0.81992674 18 36129920 36129922 3 + 0.332 0.251 -0.555
ENSG00000134759 E013 1.0994462 0.0107892519 0.880033750 0.95953247 18 36129923 36129923 1 + 0.332 0.310 -0.140
ENSG00000134759 E014 1.0994462 0.0107892519 0.880033750 0.95953247 18 36129924 36129924 1 + 0.332 0.310 -0.140
ENSG00000134759 E015 6.3476235 0.0033235696 0.693399679 0.87474448 18 36129925 36130071 147 + 0.884 0.845 -0.152
ENSG00000134759 E016 6.5939278 0.0023294275 0.914591301 0.97309389 18 36133238 36133316 79 + 0.884 0.876 -0.032
ENSG00000134759 E017 9.6046376 0.0018876875 0.248085578 0.53893936 18 36136307 36136377 71 + 1.072 0.970 -0.372
ENSG00000134759 E018 0.1271363 0.0124464961 0.478927993   18 36136378 36136632 255 + 0.000 0.101 11.119
ENSG00000134759 E019 0.2541163 0.0161007476 0.205012807   18 36137174 36137183 10 + 0.000 0.182 12.049
ENSG00000134759 E020 0.5083889 0.0162483466 0.034027333 0.17575466 18 36137184 36137235 52 + 0.000 0.310 12.962
ENSG00000134759 E021 0.3719991 0.0165492814 0.513290000   18 36138095 36138269 175 + 0.090 0.182 1.182
ENSG00000134759 E022 6.3350968 0.0038785469 0.688381578 0.87176116 18 36138270 36138294 25 + 0.884 0.845 -0.152
ENSG00000134759 E023 12.1545090 0.0012363471 0.158636793 0.42575389 18 36138295 36138426 132 + 1.170 1.058 -0.403
ENSG00000134759 E024 0.6349606 0.0395190842 0.016018390 0.10977584 18 36138427 36138641 215 + 0.000 0.362 13.167
ENSG00000134759 E025 5.4565052 0.0029583244 0.123973419 0.37299913 18 36138795 36138806 12 + 0.884 0.714 -0.676
ENSG00000134759 E026 8.4757959 0.0017061061 0.031738507 0.16831707 18 36138807 36138872 66 + 1.063 0.861 -0.756
ENSG00000134759 E027 2.2105713 0.0063543369 0.473951897 0.74078951 18 36139419 36139613 195 + 0.453 0.557 0.504
ENSG00000134759 E028 0.6161669 0.0367633088 0.573112176 0.80875510 18 36139662 36139760 99 + 0.164 0.251 0.767
ENSG00000134759 E029 8.5569517 0.0035838244 0.989891812 1.00000000 18 36141137 36141201 65 + 0.978 0.982 0.017
ENSG00000134759 E030 0.1265070 0.0122667872 0.479142284   18 36141373 36141422 50 + 0.000 0.101 11.120
ENSG00000134759 E031 10.2493060 0.0015239490 0.587451675 0.81692499 18 36142281 36142347 67 + 1.072 1.027 -0.163
ENSG00000134759 E032 0.0000000       18 36142348 36142349 2 +      
ENSG00000134759 E033 5.9203750 0.0327783129 0.046983828 0.21294068 18 36142826 36142829 4 + 0.945 0.691 -0.999
ENSG00000134759 E034 16.1911715 0.0008402446 0.188026793 0.46628738 18 36142830 36142966 137 + 1.277 1.186 -0.322
ENSG00000134759 E035 12.9877574 0.0011149307 0.070002223 0.26770899 18 36144939 36145034 96 + 1.209 1.068 -0.505
ENSG00000134759 E036 0.0000000       18 36145035 36145358 324 +      
ENSG00000134759 E037 12.3929644 0.0012130788 0.112237247 0.35216730 18 36145948 36146048 101 + 1.183 1.058 -0.450
ENSG00000134759 E038 17.2468496 0.0270365171 0.128198718 0.37955040 18 36146250 36146381 132 + 1.322 1.186 -0.479
ENSG00000134759 E039 13.0666990 0.0323484128 0.964371347 0.99246231 18 36154850 36154930 81 + 1.149 1.147 -0.006
ENSG00000134759 E040 14.6040203 0.0009851033 0.237697061 0.52665982 18 36154931 36154999 69 + 1.233 1.147 -0.303
ENSG00000134759 E041 27.8102744 0.0023279186 0.420524502 0.69982315 18 36156466 36156654 189 + 1.480 1.437 -0.148
ENSG00000134759 E042 0.0000000       18 36158503 36158614 112 +      
ENSG00000134759 E043 13.9217316 0.0041297900 0.770053374 0.91131037 18 36158835 36158904 70 + 1.183 1.163 -0.072
ENSG00000134759 E044 9.2768863 0.0028025071 0.694613458 0.87522854 18 36159735 36159757 23 + 1.027 0.994 -0.123
ENSG00000134759 E045 17.0606523 0.0008203526 0.321465974 0.61451570 18 36159758 36159830 73 + 1.287 1.221 -0.233
ENSG00000134759 E046 0.4907673 0.0661180759 0.904114861   18 36159957 36159957 1 + 0.164 0.182 0.182
ENSG00000134759 E047 12.4122738 0.0011322772 0.236033510 0.52530459 18 36159958 36160015 58 + 1.170 1.077 -0.332
ENSG00000134759 E048 13.5148963 0.0010239142 0.237865514 0.52685990 18 36160932 36161004 73 + 1.202 1.114 -0.317
ENSG00000134759 E049 34.1655620 0.0017521065 0.302239423 0.59538560 18 36164475 36164667 193 + 1.518 1.574 0.193
ENSG00000134759 E050 5.5906311 0.0043576133 0.003592582 0.03946754 18 36164668 36165225 558 + 0.625 0.958 1.329
ENSG00000134759 E051 1.4617515 0.0092189606 0.713443581 0.88451063 18 36166889 36166965 77 + 0.416 0.362 -0.303
ENSG00000134759 E052 1.2445186 0.0187093252 0.150540731 0.41311118 18 36166966 36167047 82 + 0.228 0.451 1.405
ENSG00000134759 E053 1.2619229 0.1333916900 0.013245120 0.09644422 18 36167048 36167100 53 + 0.090 0.525 3.353
ENSG00000134759 E054 17.9904500 0.0008987196 0.634890815 0.84400538 18 36167101 36167152 52 + 1.261 1.296 0.123
ENSG00000134759 E055 9.6175316 0.0014974949 0.349936736 0.64016986 18 36167153 36167155 3 + 1.063 0.982 -0.297
ENSG00000134759 E056 19.0296785 0.0007568353 0.482908348 0.74767332 18 36167156 36167222 67 + 1.322 1.279 -0.152
ENSG00000134759 E057 0.8881924 0.0345937967 0.003321217 0.03729472 18 36169936 36170062 127 + 0.000 0.451 13.604
ENSG00000134759 E058 26.8823886 0.0006954334 0.100227627 0.33078093 18 36170063 36170196 134 + 1.396 1.491 0.327
ENSG00000134759 E059 1.6332969 0.0101449826 0.005307351 0.05176251 18 36170879 36171046 168 + 0.164 0.587 2.642
ENSG00000134759 E060 25.2473103 0.0006893646 0.002265123 0.02805861 18 36171047 36171160 114 + 1.322 1.502 0.622
ENSG00000134759 E061 87.8571723 0.0001972726 0.001071420 0.01578212 18 36174485 36180557 6073 + 1.897 1.997 0.335

Help

Please Click HERE to learn more details about the results from DEXseq.