ENSG00000135829

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000367549 ENSG00000135829 No_inf pgKDN_inf DHX9 protein_coding protein_coding 75.72526 58.91859 82.03723 3.091547 1.647378 0.477487 41.495203 25.639027 53.573571 0.6588525 1.5719065 1.0628867 0.5408250 0.438700 0.65480 0.216100 0.004491397 0.004491397 FALSE TRUE
ENST00000473076 ENSG00000135829 No_inf pgKDN_inf DHX9 protein_coding protein_coding_CDS_not_defined 75.72526 58.91859 82.03723 3.091547 1.647378 0.477487 14.775358 16.818003 11.020683 1.1091487 1.7763669 -0.6093418 0.2039583 0.287275 0.13360 -0.153675 0.049051933 0.004491397 FALSE TRUE
ENST00000474446 ENSG00000135829 No_inf pgKDN_inf DHX9 protein_coding protein_coding_CDS_not_defined 75.72526 58.91859 82.03723 3.091547 1.647378 0.477487 9.192370 6.548011 7.040508 4.1440548 0.9968627 0.1044689 0.1155417 0.102950 0.08545 -0.017500 0.812851907 0.004491397 FALSE FALSE
MSTRG.2363.2 ENSG00000135829 No_inf pgKDN_inf DHX9 protein_coding   75.72526 58.91859 82.03723 3.091547 1.647378 0.477487 8.335773 7.642005 9.695337 0.4560206 1.4779992 0.3429404 0.1126583 0.130950 0.11760 -0.013350 0.898506568 0.004491397 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000135829 E001 0.0000000       1 182839347 182839354 8 +      
ENSG00000135829 E002 0.0000000       1 182839355 182839456 102 +      
ENSG00000135829 E003 0.3719033 0.1336088482 3.920894e-01   1 182839734 182839935 202 + 0.079 0.205 1.596
ENSG00000135829 E004 25.0205932 0.0005483373 1.818169e-02 1.191212e-01 1 182842545 182842677 133 + 1.464 1.319 -0.500
ENSG00000135829 E005 46.3501485 0.0003584458 3.324397e-01 6.245373e-01 1 182843294 182843434 141 + 1.687 1.644 -0.145
ENSG00000135829 E006 30.9376116 0.0010972330 3.368403e-01 6.288168e-01 1 182852233 182852344 112 + 1.519 1.467 -0.181
ENSG00000135829 E007 27.1428501 0.0049398085 6.799516e-03 6.189453e-02 1 182853306 182853418 113 + 1.509 1.332 -0.611
ENSG00000135829 E008 13.7168773 0.0040809834 3.743141e-03 4.053867e-02 1 182854030 182854040 11 + 1.249 1.001 -0.890
ENSG00000135829 E009 37.8748972 0.0003533688 2.140229e-02 1.324680e-01 1 182854041 182854178 138 + 1.628 1.513 -0.391
ENSG00000135829 E010 9.2938510 0.0014790052 1.898980e-01 4.687825e-01 1 182855577 182855713 137 + 0.953 1.073 0.444
ENSG00000135829 E011 22.5733417 0.0076246763 2.244942e-01 5.120688e-01 1 182856532 182856578 47 + 1.329 1.415 0.298
ENSG00000135829 E012 37.6116917 0.0004929606 5.027248e-01 7.623133e-01 1 182858104 182858240 137 + 1.566 1.600 0.115
ENSG00000135829 E013 27.7423597 0.0004963538 1.647350e-01 4.341310e-01 1 182858551 182858640 90 + 1.484 1.404 -0.274
ENSG00000135829 E014 29.3090786 0.0004738262 9.021360e-01 9.686671e-01 1 182858733 182858829 97 + 1.472 1.480 0.026
ENSG00000135829 E015 22.6319078 0.0006905556 7.826250e-01 9.164230e-01 1 182858830 182858894 65 + 1.360 1.378 0.062
ENSG00000135829 E016 24.5090063 0.0033026715 4.571264e-01 7.292120e-01 1 182859040 182859117 78 + 1.420 1.372 -0.164
ENSG00000135829 E017 53.1882686 0.0004343352 6.390796e-02 2.546216e-01 1 182859993 182860184 192 + 1.759 1.681 -0.264
ENSG00000135829 E018 0.0000000       1 182860185 182860305 121 +      
ENSG00000135829 E019 47.0170824 0.0022835352 9.029313e-01 9.688647e-01 1 182866444 182866585 142 + 1.678 1.672 -0.017
ENSG00000135829 E020 33.2678753 0.0004315051 6.037937e-01 8.271949e-01 1 182866961 182867043 83 + 1.540 1.513 -0.091
ENSG00000135829 E021 55.2481006 0.0021515113 6.441212e-01 8.492442e-01 1 182872337 182872493 157 + 1.752 1.732 -0.069
ENSG00000135829 E022 43.4491129 0.0004322731 4.717752e-01 7.390792e-01 1 182874854 182874954 101 + 1.655 1.622 -0.111
ENSG00000135829 E023 48.2609231 0.0008283296 2.031462e-01 4.857085e-01 1 182876050 182876128 79 + 1.709 1.653 -0.192
ENSG00000135829 E024 69.1615931 0.0002491709 1.703600e-02 1.139975e-01 1 182876129 182876263 135 + 1.874 1.787 -0.296
ENSG00000135829 E025 56.8542813 0.0002571846 6.657047e-01 8.609687e-01 1 182876447 182876541 95 + 1.763 1.746 -0.057
ENSG00000135829 E026 0.1271363 0.0122492571 3.515906e-01   1 182876542 182876749 208 + 0.000 0.114 10.144
ENSG00000135829 E027 37.4616441 0.0053530473 3.115861e-01 6.047822e-01 1 182876830 182876903 74 + 1.602 1.544 -0.199
ENSG00000135829 E028 0.2536433 0.0159439326 1.308020e-01   1 182876914 182877047 134 + 0.000 0.205 11.074
ENSG00000135829 E029 2.1217681 0.0095458020 2.570206e-03 3.072966e-02 1 182877418 182878020 603 + 0.254 0.691 2.296
ENSG00000135829 E030 55.4951747 0.0118700557 2.000066e-01 4.819137e-01 1 182878021 182878173 153 + 1.776 1.699 -0.260
ENSG00000135829 E031 79.9757908 0.0002112158 3.329094e-01 6.249708e-01 1 182879250 182879410 161 + 1.888 1.921 0.112
ENSG00000135829 E032 65.2279819 0.0008931707 6.033126e-01 8.269960e-01 1 182880497 182880608 112 + 1.823 1.803 -0.066
ENSG00000135829 E033 41.5029550 0.0003677846 4.850623e-01 7.488794e-01 1 182881264 182881284 21 + 1.636 1.603 -0.110
ENSG00000135829 E034 82.0168424 0.0001868815 4.130018e-01 6.939527e-01 1 182881285 182881425 141 + 1.901 1.929 0.094
ENSG00000135829 E035 88.6418427 0.0001643928 1.995960e-01 4.813213e-01 1 182881520 182881647 128 + 1.929 1.970 0.140
ENSG00000135829 E036 57.3207443 0.0008330102 7.443381e-02 2.781675e-01 1 182883139 182883216 78 + 1.727 1.801 0.250
ENSG00000135829 E037 67.1069702 0.0002474954 9.271284e-01 9.783362e-01 1 182883217 182883319 103 + 1.828 1.825 -0.009
ENSG00000135829 E038 50.9833667 0.0004258254 3.488239e-01 6.393946e-01 1 182883320 182883368 49 + 1.726 1.686 -0.134
ENSG00000135829 E039 74.5070377 0.0029740405 9.171160e-01 9.739640e-01 1 182883520 182883635 116 + 1.873 1.870 -0.011
ENSG00000135829 E040 114.8548282 0.0001525650 9.556960e-03 7.806716e-02 1 182884613 182884813 201 + 2.026 2.099 0.245
ENSG00000135829 E041 250.0006371 0.0007001533 2.241151e-06 9.332608e-05 1 182887083 182887982 900 + 2.350 2.447 0.324

Help

Please Click HERE to learn more details about the results from DEXseq.