ENSG00000137207

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000372422 ENSG00000137207 No_inf pgKDN_inf YIPF3 protein_coding protein_coding 128.9397 126.0543 140.2401 1.04191 3.534871 0.153842 109.515 97.71643 123.7909 2.660631 1.721676 0.3412014 0.8491583 0.77505 0.884075 0.109025 0.02112687 1.171662e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000137207 E001 1.4967759 0.0241344677 0.0730056185 0.274542255 6 43511832 43511839 8 - 0.235 0.513 1.657
ENSG00000137207 E002 28.3705408 0.0004870275 0.1068052957 0.342394010 6 43511840 43511927 88 - 1.420 1.510 0.309
ENSG00000137207 E003 145.5331439 0.0002007566 0.3587514667 0.648182694 6 43511928 43512158 231 - 2.154 2.177 0.076
ENSG00000137207 E004 95.7082520 0.0002110013 0.3097006659 0.603010676 6 43512159 43512219 61 - 1.969 2.000 0.105
ENSG00000137207 E005 128.2944043 0.0001445838 0.6294912662 0.841099516 6 43512220 43512315 96 - 2.118 2.105 -0.041
ENSG00000137207 E006 55.4909957 0.0002971190 0.5440154356 0.790637121 6 43512440 43512454 15 - 1.764 1.740 -0.081
ENSG00000137207 E007 49.2138219 0.0010930383 0.3080881697 0.601306052 6 43512455 43512457 3 - 1.723 1.678 -0.151
ENSG00000137207 E008 53.6704725 0.0002747397 0.6230466655 0.837697534 6 43512458 43512465 8 - 1.748 1.728 -0.067
ENSG00000137207 E009 112.8656128 0.0001498829 0.5827540677 0.814156967 6 43512466 43512534 69 - 2.064 2.049 -0.050
ENSG00000137207 E010 84.0293569 0.0001808214 0.8120646653 0.930860038 6 43512535 43512563 29 - 1.933 1.926 -0.025
ENSG00000137207 E011 2.0018949 0.0077175980 0.0079874682 0.069076123 6 43512564 43512760 197 - 0.235 0.630 2.187
ENSG00000137207 E012 58.8105185 0.0002541999 0.7419161674 0.897850575 6 43512761 43512762 2 - 1.783 1.771 -0.042
ENSG00000137207 E013 88.3645815 0.0002092587 0.8292359228 0.938231630 6 43512763 43512827 65 - 1.948 1.955 0.024
ENSG00000137207 E014 35.6974535 0.0005391055 0.2412619981 0.530786237 6 43512828 43512874 47 - 1.534 1.593 0.201
ENSG00000137207 E015 2.8925133 0.0073975405 0.0001475892 0.003263663 6 43512875 43513068 194 - 0.235 0.779 2.809
ENSG00000137207 E016 0.0000000       6 43513069 43513098 30 -      
ENSG00000137207 E017 25.9336432 0.0005592555 0.9556726027 0.989282796 6 43513099 43513141 43 - 1.432 1.429 -0.010
ENSG00000137207 E018 59.4630082 0.0007336539 0.9939544636 1.000000000 6 43513142 43513200 59 - 1.781 1.782 0.000
ENSG00000137207 E019 2.4847596 0.0194176566 0.0665804574 0.259951224 6 43513201 43513213 13 - 0.386 0.654 1.294
ENSG00000137207 E020 6.0598695 0.0420728475 0.0617881696 0.249773882 6 43513214 43513358 145 - 0.704 0.956 0.984
ENSG00000137207 E021 77.6868686 0.0031700985 0.8909729503 0.963657304 6 43513359 43513441 83 - 1.898 1.894 -0.015
ENSG00000137207 E022 33.8913159 0.0004344334 0.8932065199 0.964545008 6 43513442 43513448 7 - 1.546 1.539 -0.022
ENSG00000137207 E023 31.4564168 0.0009763356 0.9402820894 0.983035673 6 43513449 43513451 3 - 1.509 1.513 0.015
ENSG00000137207 E024 3.3637985 0.0059470297 0.0085002579 0.071981929 6 43513452 43513587 136 - 0.427 0.779 1.586
ENSG00000137207 E025 39.4963720 0.0017971615 0.7049313856 0.880148802 6 43513588 43513595 8 - 1.617 1.598 -0.063
ENSG00000137207 E026 49.0516791 0.0002932873 0.7953249773 0.922216527 6 43513596 43513633 38 - 1.705 1.694 -0.036
ENSG00000137207 E027 2.9742105 0.0052850966 0.0812256529 0.292855429 6 43513634 43513838 205 - 0.464 0.700 1.072
ENSG00000137207 E028 0.6347396 0.0147458499 0.0178616828 0.117711632 6 43515193 43515306 114 - 0.000 0.353 10.694
ENSG00000137207 E029 1.7570296 0.0265744511 0.0052873528 0.051647592 6 43515537 43515594 58 - 0.170 0.603 2.656
ENSG00000137207 E030 34.7298587 0.0011795222 0.6855566552 0.870138909 6 43515595 43515605 11 - 1.563 1.542 -0.071
ENSG00000137207 E031 52.5297672 0.0002960498 0.6462810089 0.850320702 6 43515606 43515633 28 - 1.719 1.738 0.065
ENSG00000137207 E032 84.5643847 0.0002070831 0.0776181700 0.285031550 6 43515634 43515701 68 - 1.960 1.903 -0.191
ENSG00000137207 E033 132.2673923 0.0001618042 0.0162810931 0.110823866 6 43515889 43516046 158 - 2.155 2.093 -0.206
ENSG00000137207 E034 57.5824379 0.0003825101 0.7322399386 0.893592700 6 43516047 43516095 49 - 1.775 1.761 -0.045
ENSG00000137207 E035 3.1194022 0.0085750156 0.0065747460 0.060313097 6 43516096 43516113 18 - 0.386 0.761 1.735
ENSG00000137207 E036 4.5706750 0.0212049478 0.1387466392 0.396102119 6 43516114 43516187 74 - 0.638 0.831 0.788
ENSG00000137207 E037 1.6063890 0.0092757744 0.3638832596 0.652655289 6 43516188 43516190 3 - 0.341 0.478 0.750
ENSG00000137207 E038 4.8154841 0.0098070837 0.1240933285 0.373214163 6 43516191 43516391 201 - 0.661 0.846 0.750
ENSG00000137207 E039 6.6193762 0.0232021769 0.0001703898 0.003670049 6 43516496 43516726 231 - 0.587 1.053 1.844
ENSG00000137207 E040 80.3277788 0.0081581840 0.3070044293 0.600212955 6 43516727 43516985 259 - 1.935 1.885 -0.166

Help

Please Click HERE to learn more details about the results from DEXseq.