ENSG00000138326

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000372360 ENSG00000138326 No_inf pgKDN_inf RPS24 protein_coding protein_coding 1009.161 886.3634 1174.201 7.029834 16.78671 0.4057052 664.5737 666.0743 758.7155 9.690865 24.48521 0.1878731 0.6618500 0.751425 0.646025 -0.10540 2.959315e-05 7.969346e-07 FALSE TRUE
ENST00000613865 ENSG00000138326 No_inf pgKDN_inf RPS24 protein_coding protein_coding 1009.161 886.3634 1174.201 7.029834 16.78671 0.4057052 308.4384 175.4592 382.1187 5.759808 20.00408 1.1228406 0.3014083 0.198025 0.325575 0.12755 7.969346e-07 7.969346e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000138326 E001 0.4832458 4.940388e-01 6.504617e-01   10 78033760 78033835 76 + 0.226 0.102 -1.370
ENSG00000138326 E002 3.9602889 3.634378e-03 3.056989e-03 3.496091e-02 10 78033836 78033862 27 + 0.840 0.454 -1.681
ENSG00000138326 E003 9.4569839 1.625048e-03 6.680970e-02 2.604428e-01 10 78033863 78033873 11 + 1.092 0.923 -0.624
ENSG00000138326 E004 34.6779475 9.208336e-03 9.375301e-01 9.820871e-01 10 78033874 78033876 3 + 1.554 1.550 -0.012
ENSG00000138326 E005 123.7750766 1.425533e-04 1.956143e-01 4.759016e-01 10 78033877 78033885 9 + 2.079 2.113 0.115
ENSG00000138326 E006 162.2277377 1.063089e-04 6.586879e-02 2.585118e-01 10 78033886 78033890 5 + 2.191 2.234 0.143
ENSG00000138326 E007 217.2430489 8.159191e-05 2.022423e-01 4.846591e-01 10 78033891 78033903 13 + 2.326 2.352 0.084
ENSG00000138326 E008 217.2430489 8.159191e-05 2.022423e-01 4.846591e-01 10 78033904 78033904 1 + 2.326 2.352 0.084
ENSG00000138326 E009 0.0000000       10 78033905 78033916 12 +      
ENSG00000138326 E010 0.0000000       10 78033917 78033986 70 +      
ENSG00000138326 E011 0.0000000       10 78033987 78034209 223 +      
ENSG00000138326 E012 0.3641952 1.654138e-02 6.792230e-01   10 78034210 78034316 107 + 0.163 0.102 -0.788
ENSG00000138326 E013 0.2438580 1.640711e-02 9.080145e-01   10 78034317 78034421 105 + 0.089 0.102 0.212
ENSG00000138326 E014 437.6791567 5.146055e-05 6.389063e-01 8.464241e-01 10 78035352 78035417 66 + 2.639 2.645 0.020
ENSG00000138326 E015 494.7093272 5.639513e-05 6.850265e-03 6.217808e-02 10 78035511 78035565 55 + 2.712 2.676 -0.118
ENSG00000138326 E016 575.6598507 4.975219e-05 3.050343e-03 3.492747e-02 10 78035566 78035720 155 + 2.777 2.742 -0.118
ENSG00000138326 E017 3.5445256 1.240836e-02 8.369465e-01 9.415686e-01 10 78035721 78036529 809 + 0.645 0.671 0.113
ENSG00000138326 E018 501.8040447 5.075863e-04 4.203568e-01 6.997484e-01 10 78037194 78037304 111 + 2.707 2.695 -0.042
ENSG00000138326 E019 6.9705536 1.963917e-03 8.728305e-01 9.565454e-01 10 78037305 78037438 134 + 0.893 0.909 0.060
ENSG00000138326 E020 5.1976714 2.842746e-03 2.080614e-02 1.300149e-01 10 78037439 78037441 3 + 0.645 0.909 1.060
ENSG00000138326 E021 17.1805090 1.741506e-02 4.071177e-01 6.896378e-01 10 78037442 78037964 523 + 1.293 1.219 -0.263
ENSG00000138326 E022 1.2065975 1.016498e-02 2.983579e-01 5.913000e-01 10 78037965 78037982 18 + 0.414 0.253 -1.010
ENSG00000138326 E023 1.3276901 1.320512e-02 2.026032e-01 4.850927e-01 10 78037983 78037993 11 + 0.450 0.253 -1.203
ENSG00000138326 E024 21.5937813 2.680948e-02 8.068778e-01 9.287920e-01 10 78037994 78038555 562 + 1.367 1.339 -0.098
ENSG00000138326 E025 82.5497823 7.034666e-04 4.597736e-02 2.101850e-01 10 78038556 78040200 1645 + 1.887 1.956 0.230
ENSG00000138326 E026 6.8332193 2.022131e-03 8.060533e-01 9.281513e-01 10 78040201 78040203 3 + 0.906 0.880 -0.098
ENSG00000138326 E027 171.9523208 1.085242e-04 4.676447e-07 2.328897e-05 10 78040204 78040225 22 + 2.179 2.293 0.384
ENSG00000138326 E028 17.8939915 7.541633e-04 2.242138e-01 5.117449e-01 10 78040226 78040614 389 + 1.234 1.317 0.291
ENSG00000138326 E029 235.2479371 8.808150e-05 2.349557e-01 5.240953e-01 10 78040615 78040747 133 + 2.384 2.361 -0.079
ENSG00000138326 E030 0.6079886 1.437749e-02 7.784451e-01 9.148664e-01 10 78048981 78049225 245 + 0.226 0.184 -0.373
ENSG00000138326 E031 4.1950563 1.172612e-02 8.396711e-02 2.990216e-01 10 78054531 78056813 2283 + 0.597 0.815 0.904

Help

Please Click HERE to learn more details about the results from DEXseq.