ENSG00000138964

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000415224 ENSG00000138964 No_inf pgKDN_inf PARVG protein_coding protein_coding 94.75665 160.0033 58.34042 1.839591 0.320146 -1.455376 58.712752 86.81685 44.915851 2.2607312 1.1488565 -0.9505954 0.66214167 0.542650 0.769700 0.227050 2.427580e-07 2.955088e-12 TRUE TRUE
ENST00000417767 ENSG00000138964 No_inf pgKDN_inf PARVG protein_coding protein_coding 94.75665 160.0033 58.34042 1.839591 0.320146 -1.455376 11.880648 21.84532 5.169930 1.2340104 0.9814372 -2.0769803 0.11852500 0.136400 0.088900 -0.047500 5.113497e-01 2.955088e-12 TRUE FALSE
ENST00000453888 ENSG00000138964 No_inf pgKDN_inf PARVG protein_coding protein_coding_CDS_not_defined 94.75665 160.0033 58.34042 1.839591 0.320146 -1.455376 4.755108 14.00761 0.000000 1.0074776 0.0000000 -10.4530250 0.03054167 0.087425 0.000000 -0.087425 2.955088e-12 2.955088e-12 FALSE TRUE
ENST00000471836 ENSG00000138964 No_inf pgKDN_inf PARVG protein_coding retained_intron 94.75665 160.0033 58.34042 1.839591 0.320146 -1.455376 6.596234 13.91906 1.671437 0.8917448 0.4749139 -3.0503314 0.05969167 0.087200 0.028575 -0.058625 4.819731e-02 2.955088e-12 FALSE FALSE
MSTRG.19555.8 ENSG00000138964 No_inf pgKDN_inf PARVG protein_coding   94.75665 160.0033 58.34042 1.839591 0.320146 -1.455376 7.558129 14.04282 2.756768 0.8400400 1.0177544 -2.3445858 0.07503333 0.087825 0.047300 -0.040525 5.906105e-01 2.955088e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000138964 E001 0.0000000       22 44172956 44172983 28 +      
ENSG00000138964 E002 0.4974987 0.0315381770 1.000000e+00   22 44172984 44173191 208 + 0.154 0.153 -0.004
ENSG00000138964 E003 0.7318562 0.3888689962 3.927239e-01 0.6777323225 22 44180925 44181021 97 + 0.356 0.153 -1.586
ENSG00000138964 E004 0.8782810 0.0196076031 5.124924e-01 0.7694447272 22 44181022 44181185 164 + 0.154 0.266 0.996
ENSG00000138964 E005 0.1265070 0.0123013991 1.000000e+00   22 44181207 44181259 53 + 0.000 0.057 8.242
ENSG00000138964 E006 0.0000000       22 44181336 44181344 9 +      
ENSG00000138964 E007 0.4890681 0.0157909529 2.816057e-01   22 44181345 44181345 1 + 0.267 0.108 -1.589
ENSG00000138964 E008 3.6278601 0.0039612776 5.894038e-01 0.8180998255 22 44181346 44181370 25 + 0.550 0.628 0.350
ENSG00000138964 E009 0.1186381 0.0118754065 1.514136e-01   22 44181371 44181397 27 + 0.154 0.000 -11.156
ENSG00000138964 E010 0.2451451 0.0164117965 3.879428e-01   22 44181398 44181399 2 + 0.154 0.057 -1.589
ENSG00000138964 E011 0.3716522 0.2354090099 6.927786e-01   22 44181400 44181431 32 + 0.154 0.108 -0.590
ENSG00000138964 E012 16.6867864 0.0028346924 2.177408e-02 0.1339221353 22 44181432 44181738 307 + 1.014 1.222 0.746
ENSG00000138964 E013 6.2348793 0.0026997486 8.692806e-01 0.9550708242 22 44181739 44181741 3 + 0.814 0.794 -0.080
ENSG00000138964 E014 13.0673602 0.0011301162 4.041218e-01 0.6869611334 22 44181742 44181749 8 + 1.138 1.064 -0.267
ENSG00000138964 E015 32.4290789 0.0009889477 9.930157e-01 1.0000000000 22 44181750 44181860 111 + 1.456 1.455 -0.004
ENSG00000138964 E016 12.1353627 0.0011065669 3.132544e-01 0.6064074074 22 44181861 44181863 3 + 0.977 1.074 0.356
ENSG00000138964 E017 10.7575672 0.0012153927 3.792235e-01 0.6660709348 22 44181864 44181917 54 + 0.937 1.025 0.329
ENSG00000138964 E018 0.0000000       22 44183318 44183408 91 +      
ENSG00000138964 E019 0.0000000       22 44183409 44183419 11 +      
ENSG00000138964 E020 0.0000000       22 44183590 44184261 672 +      
ENSG00000138964 E021 0.0000000       22 44185526 44185807 282 +      
ENSG00000138964 E022 0.0000000       22 44185808 44185872 65 +      
ENSG00000138964 E023 0.0000000       22 44185873 44186576 704 +      
ENSG00000138964 E024 4.0175463 0.0157431685 2.176412e-01 0.5041478826 22 44186577 44187768 1192 + 0.494 0.682 0.844
ENSG00000138964 E025 5.0243793 0.0044825654 1.285520e-01 0.3801788154 22 44187769 44187775 7 + 0.550 0.763 0.914
ENSG00000138964 E026 53.3914935 0.0002965266 8.318250e-01 0.9392783127 22 44187776 44187878 103 + 1.659 1.668 0.033
ENSG00000138964 E027 24.9414017 0.0005531751 1.222331e-02 0.0915458844 22 44187879 44189113 1235 + 1.200 1.383 0.640
ENSG00000138964 E028 101.2832144 0.0007582674 4.719000e-02 0.2133884047 22 44189114 44189254 141 + 1.990 1.923 -0.227
ENSG00000138964 E029 94.1573788 0.0001928625 1.290535e-02 0.0948666913 22 44190551 44190666 116 + 1.971 1.887 -0.283
ENSG00000138964 E030 57.4361872 0.0004146752 3.938731e-01 0.6786732172 22 44192049 44192104 56 + 1.726 1.688 -0.130
ENSG00000138964 E031 0.3720293 0.0166683819 7.024216e-01   22 44192105 44192129 25 + 0.154 0.108 -0.589
ENSG00000138964 E032 46.8997218 0.0003420027 8.180868e-01 0.9337997043 22 44193801 44193823 23 + 1.603 1.614 0.038
ENSG00000138964 E033 0.4877773 0.0895851050 3.003326e-01   22 44196098 44196154 57 + 0.267 0.108 -1.588
ENSG00000138964 E034 35.5147237 0.0010948462 7.053596e-01 0.8802754859 22 44196155 44196156 2 + 1.511 1.488 -0.077
ENSG00000138964 E035 72.8810527 0.0002467214 5.007449e-01 0.7607655221 22 44196157 44196213 57 + 1.819 1.792 -0.091
ENSG00000138964 E036 81.8003120 0.0002365831 1.998544e-01 0.4816760763 22 44196347 44196415 69 + 1.884 1.836 -0.160
ENSG00000138964 E037 1.5144338 0.0086249920 1.435765e-01 0.4035254561 22 44198606 44198620 15 + 0.154 0.407 1.871
ENSG00000138964 E038 92.4674578 0.0002278755 4.469071e-01 0.7211215530 22 44198621 44198722 102 + 1.921 1.894 -0.090
ENSG00000138964 E039 72.5186292 0.0002063054 4.533821e-01 0.7261479935 22 44205757 44205829 73 + 1.819 1.789 -0.101
ENSG00000138964 E040 172.6654807 0.0001189413 1.728635e-05 0.0005448989 22 44206317 44210427 4111 + 2.082 2.193 0.373
ENSG00000138964 E041 0.0000000       22 44218491 44218773 283 +      
ENSG00000138964 E042 0.0000000       22 44219484 44219533 50 +      

Help

Please Click HERE to learn more details about the results from DEXseq.