ENSG00000139197

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000266563 ENSG00000139197 No_inf pgKDN_inf PEX5 protein_coding protein_coding 5.412661 5.627907 5.191424 0.5951955 0.14656 -0.116253 1.6533070 0.7739642 2.5134973 0.7739642 0.8489017 1.686565 0.3092667 0.139850 0.491075 0.351225 0.30380323 0.04460873 FALSE TRUE
ENST00000266564 ENSG00000139197 No_inf pgKDN_inf PEX5 protein_coding protein_coding 5.412661 5.627907 5.191424 0.5951955 0.14656 -0.116253 0.8279344 0.0000000 0.3242184 0.0000000 0.3242184 5.062719 0.1545250 0.000000 0.067775 0.067775 0.83637253 0.04460873 FALSE TRUE
ENST00000412720 ENSG00000139197 No_inf pgKDN_inf PEX5 protein_coding protein_coding 5.412661 5.627907 5.191424 0.5951955 0.14656 -0.116253 0.1838491 0.0000000 0.5515472 0.0000000 0.3542378 5.811335 0.0342000 0.000000 0.102600 0.102600 0.48411267 0.04460873 FALSE TRUE
ENST00000434354 ENSG00000139197 No_inf pgKDN_inf PEX5 protein_coding protein_coding 5.412661 5.627907 5.191424 0.5951955 0.14656 -0.116253 0.6849391 0.5056285 1.5491887 0.5056285 1.2730572 1.596392 0.1278833 0.091375 0.292275 0.200900 0.84082243 0.04460873 FALSE TRUE
ENST00000675855 ENSG00000139197 No_inf pgKDN_inf PEX5 protein_coding protein_coding 5.412661 5.627907 5.191424 0.5951955 0.14656 -0.116253 1.6534437 3.6783841 0.0000000 1.2710127 0.0000000 -8.526845 0.3035583 0.660675 0.000000 -0.660675 0.04460873 0.04460873 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000139197 E001 0.0000000       12 7188685 7188723 39 +      
ENSG00000139197 E002 0.0000000       12 7188724 7188810 87 +      
ENSG00000139197 E003 0.0000000       12 7189163 7189212 50 +      
ENSG00000139197 E004 0.0000000       12 7189213 7189531 319 +      
ENSG00000139197 E005 0.0000000       12 7189584 7189610 27 +      
ENSG00000139197 E006 0.0000000       12 7189611 7189660 50 +      
ENSG00000139197 E007 0.0000000       12 7189661 7189685 25 +      
ENSG00000139197 E008 0.0000000       12 7189686 7189686 1 +      
ENSG00000139197 E009 0.1268540 0.0124734322 0.624459331   12 7189687 7189696 10 + 0.000 0.089 9.540
ENSG00000139197 E010 0.2539903 0.0165836666 0.298529856   12 7189697 7189706 10 + 0.000 0.163 12.542
ENSG00000139197 E011 0.3716209 0.0170806324 0.682330355   12 7189707 7189714 8 + 0.102 0.163 0.783
ENSG00000139197 E012 0.4988833 0.0158422212 0.398810475   12 7189715 7189750 36 + 0.102 0.226 1.368
ENSG00000139197 E013 0.1268540 0.0124734322 0.624459331   12 7189751 7189844 94 + 0.000 0.089 11.653
ENSG00000139197 E014 0.1170040 0.0117937803 0.461612473   12 7189845 7189955 111 + 0.102 0.000 -12.712
ENSG00000139197 E015 0.0000000       12 7189956 7189980 25 +      
ENSG00000139197 E016 0.0000000       12 7189981 7190021 41 +      
ENSG00000139197 E017 0.0000000       12 7190022 7190088 67 +      
ENSG00000139197 E018 0.3732278 0.0704474682 0.697774933   12 7190089 7190152 64 + 0.102 0.163 0.783
ENSG00000139197 E019 0.7535042 0.0812958078 0.156984060 0.42333718 12 7190153 7190216 64 + 0.102 0.329 2.105
ENSG00000139197 E020 0.2459655 0.0162475742 0.903861720   12 7190217 7190360 144 + 0.102 0.089 -0.217
ENSG00000139197 E021 0.0000000       12 7190361 7190361 1 +      
ENSG00000139197 E022 2.7042552 0.0054142299 0.949172810 0.98676200 12 7190362 7190484 123 + 0.561 0.571 0.046
ENSG00000139197 E023 1.6079616 0.0097492195 0.579779230 0.81237174 12 7190485 7190524 40 + 0.365 0.450 0.461
ENSG00000139197 E024 0.3627784 0.0169345341 0.493000344   12 7190525 7190569 45 + 0.184 0.089 -1.217
ENSG00000139197 E025 0.0000000       12 7190570 7190793 224 +      
ENSG00000139197 E026 0.0000000       12 7190812 7190887 76 +      
ENSG00000139197 E027 1.7431837 0.0083435031 0.180845742 0.45657137 12 7190888 7190923 36 + 0.313 0.515 1.105
ENSG00000139197 E028 4.2914744 0.0048139476 0.778482764 0.91486644 12 7191226 7191358 133 + 0.739 0.706 -0.135
ENSG00000139197 E029 1.4329549 0.0089823950 0.008030581 0.06931051 12 7191569 7191571 3 + 0.561 0.163 -2.539
ENSG00000139197 E030 3.5129738 0.0327532816 0.058092387 0.24124273 12 7191572 7191700 129 + 0.779 0.515 -1.143
ENSG00000139197 E031 3.6757706 0.0833813038 0.773047518 0.91264042 12 7199011 7199113 103 + 0.695 0.644 -0.218
ENSG00000139197 E032 0.0000000       12 7201735 7201750 16 +      
ENSG00000139197 E033 3.5126765 0.0298670776 0.055387051 0.23445924 12 7201751 7201841 91 + 0.779 0.515 -1.143
ENSG00000139197 E034 0.2543986 0.0160312335 0.299087426   12 7201842 7202226 385 + 0.000 0.163 12.543
ENSG00000139197 E035 1.0902879 0.0114634776 0.218919421 0.50568333 12 7202241 7202341 101 + 0.412 0.226 -1.217
ENSG00000139197 E036 0.7270387 0.0143526556 0.316142661 0.60904331 12 7202342 7202351 10 + 0.313 0.163 -1.217
ENSG00000139197 E037 4.0082798 0.0037963310 0.094960992 0.32062264 12 7202612 7202704 93 + 0.798 0.597 -0.838
ENSG00000139197 E038 1.8506454 0.0108988706 0.636671882 0.84488564 12 7203432 7203455 24 + 0.412 0.483 0.368
ENSG00000139197 E039 4.0328290 0.0044254504 0.537808265 0.78678328 12 7203456 7203551 96 + 0.739 0.666 -0.304
ENSG00000139197 E040 5.1536204 0.0666430068 0.953818990 0.98861305 12 7207659 7207802 144 + 0.798 0.778 -0.080
ENSG00000139197 E041 3.5757462 0.1614492571 0.886241760 0.96194738 12 7208010 7208080 71 + 0.620 0.687 0.285
ENSG00000139197 E042 6.4097488 0.0025371959 0.574737254 0.80958434 12 7208457 7208669 213 + 0.833 0.893 0.230
ENSG00000139197 E043 7.0385971 0.0023920452 0.371021113 0.65908243 12 7209005 7209170 166 + 0.849 0.940 0.347
ENSG00000139197 E044 7.3766998 0.0019764916 0.856106417 0.94938303 12 7209683 7209840 158 + 0.910 0.929 0.073
ENSG00000139197 E045 3.4387832 0.0043709728 0.974885253 0.99541136 12 7210022 7210129 108 + 0.646 0.644 -0.010
ENSG00000139197 E046 5.9142597 0.0025541125 0.527242640 0.77937578 12 7210130 7210242 113 + 0.798 0.867 0.268
ENSG00000139197 E047 41.4591010 0.0004311095 0.252468331 0.54399053 12 7210243 7211483 1241 + 1.600 1.645 0.153
ENSG00000139197 E048 0.1265070 0.0124528837 0.624457653   12 7212772 7212871 100 + 0.000 0.089 11.653
ENSG00000139197 E049 0.0000000       12 7218402 7218574 173 +      

Help

Please Click HERE to learn more details about the results from DEXseq.