ENSG00000139679

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000482024 ENSG00000139679 No_inf pgKDN_inf LPAR6 protein_coding protein_coding_CDS_not_defined 144.7915 202.4461 139.6386 3.084573 2.055573 -0.5358077 7.812136 3.583745 13.67711 2.503192 1.691696 1.9292578 0.06058333 0.017225 0.09765 0.080425 0.089386039 0.004645418 FALSE  
ENST00000620633 ENSG00000139679 No_inf pgKDN_inf LPAR6 protein_coding protein_coding 144.7915 202.4461 139.6386 3.084573 2.055573 -0.5358077 133.465046 194.349139 122.52615 1.381405 1.582286 -0.6655175 0.91470000 0.960575 0.87805 -0.082525 0.004645418 0.004645418 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000139679 E001 0.0000000       13 48389567 48389570 4 -      
ENSG00000139679 E002 1.3677272 2.489747e-02 0.5256083260 0.778302903 13 48389571 48389812 242 - 0.294 0.396 0.621
ENSG00000139679 E003 0.6066364 2.072296e-02 0.2945357774 0.587957524 13 48391400 48391531 132 - 0.294 0.137 -1.379
ENSG00000139679 E004 0.1186381 1.184314e-02 0.3008054258   13 48401298 48401407 110 - 0.121 0.000 -13.351
ENSG00000139679 E005 0.2543986 1.605145e-02 0.4979590254   13 48404181 48404263 83 - 0.000 0.137 12.302
ENSG00000139679 E006 0.2537079 2.686924e-01 0.5668720725   13 48406556 48406709 154 - 0.000 0.137 11.471
ENSG00000139679 E007 0.7514889 1.405283e-02 0.2950679876 0.588359858 13 48408624 48408767 144 - 0.121 0.285 1.528
ENSG00000139679 E008 6.6709076 2.274274e-03 0.7268137516 0.890746521 13 48411045 48411137 93 - 0.890 0.853 -0.142
ENSG00000139679 E009 5.5851815 1.769105e-02 0.4839780740 0.748319289 13 48411138 48411138 1 - 0.741 0.830 0.353
ENSG00000139679 E010 409.4903935 6.157889e-05 0.0116541479 0.088879357 13 48411139 48411740 602 - 2.569 2.605 0.119
ENSG00000139679 E011 511.5945842 7.652782e-05 0.3153781799 0.608289767 13 48411741 48412205 465 - 2.681 2.693 0.042
ENSG00000139679 E012 269.3122846 8.590602e-05 0.7403856250 0.897041468 13 48412206 48412420 215 - 2.407 2.413 0.021
ENSG00000139679 E013 549.6793698 5.247794e-05 0.0002620744 0.005214323 13 48412421 48413111 691 - 2.746 2.706 -0.136
ENSG00000139679 E014 0.9712373 1.150556e-02 0.1416665447 0.400494990 13 48413112 48413113 2 - 0.417 0.192 -1.531
ENSG00000139679 E015 0.2543986 1.605145e-02 0.4979590254   13 48415700 48415810 111 - 0.000 0.137 12.302
ENSG00000139679 E016 0.0000000       13 48415811 48415816 6 -      
ENSG00000139679 E017 0.0000000       13 48416313 48416564 252 -      
ENSG00000139679 E018 0.0000000       13 48417167 48417320 154 -      
ENSG00000139679 E019 0.6342053 3.184071e-02 0.0847254961 0.300764146 13 48422650 48422790 141 - 0.000 0.285 13.383
ENSG00000139679 E020 0.1268540 1.232251e-02 1.0000000000   13 48423993 48424119 127 - 0.000 0.074 11.387
ENSG00000139679 E021 0.1186381 1.184314e-02 0.3008054258   13 48426580 48426795 216 - 0.121 0.000 -13.351
ENSG00000139679 E022 0.0000000       13 48426859 48426907 49 -      
ENSG00000139679 E023 0.0000000       13 48439609 48439812 204 -      
ENSG00000139679 E024 0.0000000       13 48444553 48444704 152 -      

Help

Please Click HERE to learn more details about the results from DEXseq.