ENSG00000139746

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

  • Note:

    • About the Coding Potential: Please check the spreadsheet in the “Results” tag to confirm the coding potential. The above figure only show the predicted coding potential. The “gene_biotype” in the result spreadsheet is from the database record. Therefore, if you find conflicts between “gene_biotype” and “codingPotential”, please trust the “gene_biotype”.

    • Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

    • For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000449987 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding protein_coding 19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 2.187754 6.563263 0.000000 2.2906086 0.0000000 -9.36046586 0.09164167 0.274925 0.000000 -0.274925 0.01717355 0.01717355 FALSE TRUE
MSTRG.7941.1 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding   19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 2.660672 1.989306 3.632977 1.9893058 0.6352838 0.86561880 0.13765000 0.083850 0.196025 0.112175 0.12341467 0.01717355 FALSE TRUE
MSTRG.7941.13 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding   19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 5.162029 5.342657 4.744073 0.7038234 1.0576355 -0.17109095 0.26762500 0.223325 0.258225 0.034900 0.93132049 0.01717355 FALSE TRUE
MSTRG.7941.15 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding   19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 1.719449 1.503693 1.601278 0.3170068 0.6425262 0.09013278 0.09040000 0.063575 0.083425 0.019850 1.00000000 0.01717355 FALSE TRUE
MSTRG.7941.3 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding   19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 1.887040 0.000000 2.050041 0.0000000 1.2009187 7.68652939 0.11350000 0.000000 0.114875 0.114875 0.43434848 0.01717355 TRUE TRUE
MSTRG.7941.6 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding   19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 2.382085 4.488430 1.602315 0.7488675 1.1328704 -1.48028831 0.11482500 0.192150 0.087425 -0.104725 0.47039684 0.01717355 TRUE TRUE
MSTRG.7941.9 ENSG00000139746 No_inf pgKDN_inf RBM26 protein_coding   19.64113 23.7397 18.4178 0.7272473 0.6810487 -0.3660252 2.566474 2.703554 3.942686 0.4819031 1.0874883 0.54264992 0.12965000 0.112975 0.213675 0.100700 0.66837464 0.01717355 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

Help

Please Click HERE to learn more details about the results of IsoformSwitchAnalyzeR.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand pgKDN.inf No.inf log2fold_No.inf_pgKDN.inf
ENSG00000139746 E001 0.0000000       13 79311824 79311828 5 -      
ENSG00000139746 E002 0.6091795 0.2205949828 4.968111e-01 7.576703e-01 13 79311829 79311884 56 - 0.267 0.154 -1.000
ENSG00000139746 E003 112.2179649 0.0001772685 9.682964e-11 9.725158e-09 13 79311885 79313750 1866 - 1.933 2.112 0.598
ENSG00000139746 E004 71.3351546 0.0011992362 1.639920e-10 1.605217e-08 13 79313751 79314993 1243 - 1.693 1.937 0.823
ENSG00000139746 E005 1.1317653 0.0130254558 3.921738e-02 1.917634e-01 13 79318622 79318735 114 - 0.108 0.431 2.586
ENSG00000139746 E006 1.2354562 0.0120750827 8.513643e-01 9.473968e-01 13 79318736 79318820 85 - 0.328 0.356 0.171
ENSG00000139746 E007 6.8138150 0.1282784547 4.130700e-01 6.939915e-01 13 79318821 79318867 47 - 0.804 0.936 0.506
ENSG00000139746 E008 4.3601137 0.1373192762 1.342183e-01 3.893810e-01 13 79318868 79318869 2 - 0.549 0.814 1.116
ENSG00000139746 E009 4.8488646 0.0991636355 1.591624e-01 4.264837e-01 13 79318870 79318876 7 - 0.614 0.841 0.934
ENSG00000139746 E010 3.9708686 0.0719027031 2.739397e-01 5.676327e-01 13 79318877 79318879 3 - 0.583 0.753 0.723
ENSG00000139746 E011 16.9241506 0.0026057742 1.849488e-01 4.624706e-01 13 79318880 79319534 655 - 1.188 1.284 0.340
ENSG00000139746 E012 47.6973372 0.0018699477 5.399997e-01 7.882096e-01 13 79319535 79319953 419 - 1.665 1.691 0.090
ENSG00000139746 E013 67.3167041 0.0002557542 7.187502e-01 8.868007e-01 13 79319954 79320710 757 - 1.836 1.822 -0.048
ENSG00000139746 E014 9.0506041 0.1499383410 3.320392e-01 6.242129e-01 13 79320955 79321301 347 - 0.891 1.056 0.615
ENSG00000139746 E015 17.8211874 0.0099381202 7.041413e-01 8.796914e-01 13 79322349 79322462 114 - 1.287 1.254 -0.115
ENSG00000139746 E016 15.9890096 0.0008624085 9.916304e-03 7.982462e-02 13 79334344 79334430 87 - 1.323 1.137 -0.657
ENSG00000139746 E017 24.9609541 0.0088167899 5.133916e-02 2.245079e-01 13 79337102 79337302 201 - 1.483 1.346 -0.471
ENSG00000139746 E018 17.3879388 0.0050749480 1.559186e-01 4.219425e-01 13 79341123 79341227 105 - 1.318 1.211 -0.374
ENSG00000139746 E019 24.6209309 0.0005798890 5.173460e-02 2.257852e-01 13 79342664 79342831 168 - 1.466 1.351 -0.400
ENSG00000139746 E020 16.0445585 0.0008531190 8.815337e-02 3.079367e-01 13 79344248 79344322 75 - 1.293 1.170 -0.436
ENSG00000139746 E021 18.5223796 0.0113921573 3.163470e-01 6.093006e-01 13 79344669 79344794 126 - 1.329 1.249 -0.281
ENSG00000139746 E022 1.7303159 0.0084044933 5.858328e-01 8.161557e-01 13 79353153 79353224 72 - 0.383 0.464 0.434
ENSG00000139746 E023 15.4972179 0.0024704050 1.206921e-02 9.087543e-02 13 79354439 79354561 123 - 1.312 1.124 -0.665
ENSG00000139746 E024 5.7058371 0.0024622508 1.059880e-02 8.345049e-02 13 79354562 79354570 9 - 0.964 0.683 -1.102
ENSG00000139746 E025 16.6577474 0.0146893580 1.674787e-01 4.380833e-01 13 79355220 79355384 165 - 1.306 1.188 -0.415
ENSG00000139746 E026 16.4462909 0.0174703589 5.160858e-03 5.076522e-02 13 79358274 79358433 160 - 1.363 1.117 -0.867
ENSG00000139746 E027 14.0427306 0.0009544776 1.864776e-02 1.211599e-01 13 79359575 79359686 112 - 1.268 1.088 -0.641
ENSG00000139746 E028 18.2819009 0.0007536846 2.487121e-01 5.395735e-01 13 79365578 79365718 141 - 1.323 1.244 -0.279
ENSG00000139746 E029 1.2419729 0.0102376193 4.043314e-01 6.871262e-01 13 79365719 79365733 15 - 0.267 0.395 0.808
ENSG00000139746 E030 0.1265070 0.0122880697 7.134730e-01   13 79365760 79366054 295 - 0.000 0.084 8.111
ENSG00000139746 E031 14.5485144 0.0011315354 4.940729e-01 7.557344e-01 13 79366055 79366195 141 - 1.155 1.206 0.181
ENSG00000139746 E032 2.1039517 0.0067164182 5.247983e-01 7.778091e-01 13 79366196 79366225 30 - 0.431 0.523 0.460
ENSG00000139746 E033 18.1124282 0.0265005303 2.763209e-01 5.698426e-01 13 79366633 79366872 240 - 1.335 1.228 -0.375
ENSG00000139746 E034 30.7356359 0.0005113856 2.008973e-02 1.273381e-01 13 79368730 79368990 261 - 1.564 1.439 -0.426
ENSG00000139746 E035 24.4669532 0.0195650627 4.083440e-02 1.961085e-01 13 79370945 79371162 218 - 1.491 1.321 -0.588
ENSG00000139746 E036 8.9518052 0.0018710555 2.795584e-01 5.728149e-01 13 79371842 79371930 89 - 1.048 0.947 -0.375
ENSG00000139746 E037 0.4903851 0.0158586675 7.784903e-01   13 79376217 79377378 1162 - 0.195 0.154 -0.414
ENSG00000139746 E038 8.8383539 0.0329071288 5.255060e-01 7.782152e-01 13 79377379 79377515 137 - 1.026 0.957 -0.253
ENSG00000139746 E039 6.5791921 0.0021603203 3.476103e-02 1.781792e-01 13 79378789 79378907 119 - 0.989 0.769 -0.845
ENSG00000139746 E040 0.2448930 0.0163296936 8.256993e-01   13 79398153 79398184 32 - 0.108 0.084 -0.414
ENSG00000139746 E041 6.1355853 0.0207173208 5.057610e-01 7.645789e-01 13 79405704 79406477 774 - 0.891 0.814 -0.299

Help

Please Click HERE to learn more details about the results from DEXseq.